Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 H 1.09008 * 109.46925 * 55.00409 * 3 2 1 5 5 C 1.52996 * 109.47283 * 295.00026 * 3 2 1 6 6 C 1.50703 * 109.46827 * 174.99696 * 3 2 1 7 7 O 1.21279 * 120.00027 * 12.65366 * 6 3 2 8 8 N 1.34779 * 119.99695 * 192.64856 * 6 3 2 9 9 C 1.37134 * 120.00085 * 5.03816 * 8 6 3 10 10 H 1.07996 * 119.99712 * 232.51120 * 9 8 6 11 11 C 1.38877 * 120.00232 * 52.51514 * 9 8 6 12 12 N 1.31421 * 120.00285 * 200.25628 * 11 9 8 13 13 Si 1.86804 * 119.99936 * 20.25454 * 11 9 8 14 14 H 1.48501 * 109.47057 * 95.15222 * 13 11 9 15 15 H 1.48501 * 109.47185 * 215.14866 * 13 11 9 16 16 H 1.48495 * 109.47265 * 335.15178 * 13 11 9 17 17 C 1.39811 * 119.99624 * 185.02994 * 8 6 3 18 18 C 1.38957 * 120.06671 * 291.67031 * 17 8 6 19 19 C 1.38077 * 119.93059 * 179.77126 * 18 17 8 20 20 C 1.38414 * 120.06743 * 0.50422 * 19 18 17 21 21 Cl 1.73599 * 119.93654 * 179.72375 * 20 19 18 22 22 C 1.38421 * 120.13047 * 359.74830 * 20 19 18 23 23 C 1.38072 * 120.06263 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47182 * 59.99834 * 1 2 3 25 25 H 1.08997 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47342 * 299.99923 * 1 2 3 27 27 H 1.08997 * 109.47342 * 240.00077 * 2 1 3 28 28 H 1.08999 * 109.46784 * 119.99811 * 2 1 3 29 29 H 1.08996 * 109.47406 * 295.82449 * 5 3 2 30 30 H 1.09005 * 109.46946 * 175.82960 * 5 3 2 31 31 H 1.08995 * 109.47153 * 55.82684 * 5 3 2 32 32 H 0.97001 * 120.00775 * 179.97438 * 12 11 9 33 33 H 1.07994 * 120.03293 * 0.02562 * 18 17 8 34 34 H 1.08006 * 119.96638 * 180.25759 * 19 18 17 35 35 H 1.08000 * 119.97214 * 179.97438 * 22 20 19 36 36 H 1.08002 * 120.02954 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1639 0.4140 -0.0256 8 7 4.1938 2.5910 0.4008 9 6 3.4860 3.7339 0.6718 10 1 3.6976 4.6419 0.1268 11 6 2.4973 3.7236 1.6469 12 7 1.5650 4.6500 1.6473 13 14 2.4923 2.3931 2.9581 14 1 3.1848 2.8927 4.1730 15 1 1.0909 2.0381 3.2978 16 1 3.1972 1.1906 2.4458 17 6 5.5916 2.6151 0.4120 18 6 6.2918 1.9352 1.4012 19 6 7.6724 1.9571 1.4068 20 6 8.3587 2.6638 0.4346 21 17 10.0944 2.6949 0.4491 22 6 7.6639 3.3464 -0.5490 23 6 6.2834 3.3235 -0.5631 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1293 1.6327 -2.1440 30 1 1.9334 3.1746 -1.2765 31 1 0.5545 2.0598 -1.4328 32 1 0.8742 4.6427 2.3282 33 1 5.7567 1.3870 2.1624 34 1 8.2172 1.4254 2.1730 35 1 8.2020 3.8974 -1.3061 36 1 5.7418 3.8565 -1.3305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592650648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -15.770400 kcal Electronic energy + Delta-G solvation = -20391.749865 eV Core-core repulsion = 17287.867686 eV Total energy + Delta-G solvation = -3103.882179 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01617 -38.23832 -36.25004 -34.87238 -34.75893 -32.25828 -30.68775 -29.69079 -28.47056 -24.91088 -24.70555 -22.71615 -22.31977 -20.64366 -18.90373 -17.79622 -16.91781 -16.04799 -15.51927 -15.13797 -14.64862 -14.42548 -13.94456 -13.62543 -13.20370 -13.09598 -13.05577 -12.85874 -12.63945 -12.03520 -11.74987 -11.50523 -11.41233 -11.30499 -11.08995 -11.05495 -10.99447 -10.72219 -10.56199 -10.19955 -10.13261 -9.83662 -9.31101 -8.74350 -8.62529 -8.34257 -7.62693 -6.64257 -4.42132 1.57417 1.71652 2.40388 2.99148 3.10141 3.17209 3.57037 3.95650 4.06695 4.22913 4.72270 5.20677 5.21561 5.41520 5.45977 5.53099 5.75013 5.81990 5.91471 5.97899 6.02511 6.10472 6.24029 6.32481 6.37348 6.45077 6.49932 6.55385 6.58688 6.64825 6.88209 7.01053 7.03652 7.10009 7.52137 7.74693 8.30981 8.78986 9.06143 9.51803 10.43557 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005778 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.893356 B = 4845.140390 C = 5186.795509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.098 4.098 4 H 0.094 0.906 5 C -0.130 4.130 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.445 5.445 9 C -0.352 4.352 10 H 0.103 0.897 11 C 0.085 3.915 12 N -0.847 5.847 13 Si 0.846 3.154 14 H -0.274 1.274 15 H -0.273 1.273 16 H -0.254 1.254 17 C 0.185 3.815 18 C -0.108 4.108 19 C -0.102 4.102 20 C -0.053 4.053 21 Cl -0.090 7.090 22 C -0.103 4.103 23 C -0.110 4.110 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.278 0.722 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 -3.177 -2.186 5.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.119 4.119 4 H 0.112 0.888 5 C -0.187 4.187 6 C 0.301 3.699 7 O -0.459 6.459 8 N -0.164 5.164 9 C -0.477 4.477 10 H 0.120 0.880 11 C -0.124 4.124 12 N -0.481 5.481 13 Si 0.670 3.330 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.178 1.178 17 C 0.094 3.906 18 C -0.128 4.128 19 C -0.122 4.122 20 C -0.080 4.080 21 Cl -0.061 7.061 22 C -0.122 4.122 23 C -0.130 4.130 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.631 -3.583 -2.182 6.249 hybrid contribution 0.029 -0.402 1.053 1.127 sum 4.661 -3.984 -1.129 6.235 Atomic orbital electron populations 1.21839 0.96094 1.00965 1.02018 1.21395 0.94910 0.95809 1.02528 1.21189 0.92371 0.96766 1.01612 0.88788 1.21592 1.00283 1.02509 0.94329 1.20763 0.90169 0.82881 0.76106 1.90562 1.69531 1.32440 1.53354 1.41420 1.00848 1.10532 1.63606 1.18816 1.17165 0.90116 1.21634 0.87979 1.25441 0.94822 0.96031 0.96103 1.69705 1.11312 1.33725 1.33326 0.87301 0.78853 0.83622 0.83220 1.19987 1.19848 1.17774 1.18204 0.86094 0.94023 0.92295 1.21277 0.93055 1.00076 0.98371 1.20802 0.93747 0.99406 0.98218 1.20755 0.83254 1.04111 0.99837 1.98322 1.11560 1.97842 1.98423 1.20804 0.93727 0.99672 0.98036 1.21201 0.92897 1.00354 0.98540 0.92241 0.93081 0.93003 0.91489 0.92361 0.93766 0.89927 0.92658 0.91110 0.85809 0.85441 0.85284 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 37.16 0.36 -1.95 16 2 C -0.11 -2.01 4.71 -26.73 -0.13 -2.13 16 3 C -0.10 -2.07 1.35 -91.77 -0.12 -2.19 16 4 H 0.09 2.11 3.28 -51.92 -0.17 1.94 16 5 C -0.13 -2.45 8.90 37.16 0.33 -2.12 16 6 C 0.51 11.96 4.38 -10.98 -0.05 11.91 16 7 O -0.58 -14.54 15.66 5.56 0.09 -14.45 16 8 N -0.44 -10.35 1.99 -58.98 -0.12 -10.46 16 9 C -0.35 -8.62 7.80 -14.94 -0.12 -8.74 16 10 H 0.10 2.64 8.06 -52.49 -0.42 2.21 16 11 C 0.09 2.11 4.02 -17.49 -0.07 2.04 16 12 N -0.85 -21.66 13.96 55.49 0.77 -20.88 16 13 Si 0.85 19.56 25.11 -169.99 -4.27 15.30 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.25 -6.04 5.69 56.52 0.32 -5.72 16 17 C 0.18 3.97 4.77 -83.68 -0.40 3.57 16 18 C -0.11 -2.17 9.38 -39.37 -0.37 -2.54 16 19 C -0.10 -1.75 9.82 -39.58 -0.39 -2.13 16 20 C -0.05 -0.86 6.32 -39.45 -0.25 -1.11 16 21 Cl -0.09 -1.25 28.95 -51.86 -1.50 -2.75 16 22 C -0.10 -1.66 9.82 -39.57 -0.39 -2.05 16 23 C -0.11 -2.05 9.82 -39.37 -0.39 -2.44 16 24 H 0.06 0.84 6.48 -51.93 -0.34 0.50 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.71 6.89 -51.93 -0.36 1.35 16 31 H 0.05 0.92 6.38 -51.93 -0.33 0.58 16 32 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 34 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -26.72 308.62 -6.99 -33.71 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.64 Total: 4.79 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.98 Total: -9.90 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.66 Total: -31.35 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.27 Total: 15.30 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.72 -6.99 -33.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.940 kcal (2) G-P(sol) polarization free energy of solvation -26.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds