Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 H 1.09008 * 109.46925 * 55.00409 * 3 2 1 5 5 C 1.52996 * 109.47283 * 295.00026 * 3 2 1 6 6 C 1.50703 * 109.46827 * 174.99696 * 3 2 1 7 7 O 1.21279 * 120.00027 * 12.65366 * 6 3 2 8 8 N 1.34779 * 119.99695 * 192.64856 * 6 3 2 9 9 C 1.37134 * 120.00085 * 5.03816 * 8 6 3 10 10 H 1.07996 * 119.99712 * 232.51120 * 9 8 6 11 11 C 1.38877 * 120.00232 * 52.51514 * 9 8 6 12 12 N 1.31421 * 120.00285 * 200.25628 * 11 9 8 13 13 Si 1.86804 * 119.99936 * 20.25454 * 11 9 8 14 14 H 1.48501 * 109.47057 * 95.15222 * 13 11 9 15 15 H 1.48501 * 109.47185 * 215.14866 * 13 11 9 16 16 H 1.48495 * 109.47265 * 335.15178 * 13 11 9 17 17 C 1.39811 * 119.99624 * 185.02994 * 8 6 3 18 18 C 1.38957 * 120.06671 * 291.67031 * 17 8 6 19 19 C 1.38077 * 119.93059 * 179.77126 * 18 17 8 20 20 C 1.38414 * 120.06743 * 0.50422 * 19 18 17 21 21 Cl 1.73599 * 119.93654 * 179.72375 * 20 19 18 22 22 C 1.38421 * 120.13047 * 359.74830 * 20 19 18 23 23 C 1.38072 * 120.06263 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47182 * 59.99834 * 1 2 3 25 25 H 1.08997 * 109.47176 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47342 * 299.99923 * 1 2 3 27 27 H 1.08997 * 109.47342 * 240.00077 * 2 1 3 28 28 H 1.08999 * 109.46784 * 119.99811 * 2 1 3 29 29 H 1.08996 * 109.47406 * 295.82449 * 5 3 2 30 30 H 1.09005 * 109.46946 * 175.82960 * 5 3 2 31 31 H 1.08995 * 109.47153 * 55.82684 * 5 3 2 32 32 H 0.97001 * 120.00775 * 179.97438 * 12 11 9 33 33 H 1.07994 * 120.03293 * 0.02562 * 18 17 8 34 34 H 1.08006 * 119.96638 * 180.25759 * 19 18 17 35 35 H 1.08000 * 119.97214 * 179.97438 * 22 20 19 36 36 H 1.08002 * 120.02954 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1639 0.4140 -0.0256 8 7 4.1938 2.5910 0.4008 9 6 3.4860 3.7339 0.6718 10 1 3.6976 4.6419 0.1268 11 6 2.4973 3.7236 1.6469 12 7 1.5650 4.6500 1.6473 13 14 2.4923 2.3931 2.9581 14 1 3.1848 2.8927 4.1730 15 1 1.0909 2.0381 3.2978 16 1 3.1972 1.1906 2.4458 17 6 5.5916 2.6151 0.4120 18 6 6.2918 1.9352 1.4012 19 6 7.6724 1.9571 1.4068 20 6 8.3587 2.6638 0.4346 21 17 10.0944 2.6949 0.4491 22 6 7.6639 3.3464 -0.5490 23 6 6.2834 3.3235 -0.5631 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1293 1.6327 -2.1440 30 1 1.9334 3.1746 -1.2765 31 1 0.5545 2.0598 -1.4328 32 1 0.8742 4.6427 2.3282 33 1 5.7567 1.3870 2.1624 34 1 8.2172 1.4254 2.1730 35 1 8.2020 3.8974 -1.3061 36 1 5.7418 3.8565 -1.3305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592650648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -28.737775 kcal Electronic energy + Delta-G solvation = -20392.312173 eV Core-core repulsion = 17287.867686 eV Total energy + Delta-G solvation = -3104.444487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70150 -39.73877 -37.55780 -36.64171 -36.29040 -34.11827 -32.09880 -31.17416 -29.94966 -26.76039 -26.26241 -24.19809 -23.75768 -22.17023 -20.63989 -19.51551 -18.51552 -17.56221 -17.30594 -16.75485 -16.26358 -15.97942 -15.47435 -15.32978 -14.76032 -14.61943 -14.49927 -14.42036 -14.22558 -13.52733 -13.19483 -13.13148 -12.95566 -12.86065 -12.69778 -12.51885 -12.38224 -12.29905 -12.03644 -11.80189 -11.60474 -11.48034 -11.14275 -10.54241 -10.04794 -10.01121 -9.25531 -8.58695 -6.36357 0.12631 0.30103 1.10752 1.12726 1.21894 1.28495 1.76873 2.06610 2.49471 2.65765 2.81650 3.82295 3.87143 3.90822 3.97028 4.07337 4.30268 4.44081 4.49750 4.53597 4.60390 4.63665 4.81159 4.93062 4.98090 5.01584 5.04973 5.11657 5.18157 5.21510 5.39022 5.51468 5.55261 5.58776 5.65314 5.98405 6.38218 6.88254 7.20903 7.70039 8.52614 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005778 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.893356 B = 4845.140390 C = 5186.795509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.080 0.920 5 C -0.121 4.121 6 C 0.500 3.500 7 O -0.602 6.602 8 N -0.447 5.447 9 C -0.346 4.346 10 H 0.083 0.917 11 C 0.066 3.934 12 N -0.871 5.871 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.259 1.259 16 H -0.269 1.269 17 C 0.143 3.857 18 C -0.128 4.128 19 C -0.097 4.097 20 C -0.050 4.050 21 Cl -0.060 7.060 22 C -0.091 4.091 23 C -0.118 4.118 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.284 0.716 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -3.587 -2.625 6.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.125 4.125 4 H 0.098 0.902 5 C -0.179 4.179 6 C 0.292 3.708 7 O -0.485 6.485 8 N -0.165 5.165 9 C -0.472 4.472 10 H 0.101 0.899 11 C -0.141 4.141 12 N -0.506 5.506 13 Si 0.707 3.293 14 H -0.204 1.204 15 H -0.184 1.184 16 H -0.194 1.194 17 C 0.052 3.948 18 C -0.147 4.147 19 C -0.116 4.116 20 C -0.077 4.077 21 Cl -0.032 7.032 22 C -0.110 4.110 23 C -0.137 4.137 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.171 0.829 35 H 0.180 0.820 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.441 -3.978 -2.615 7.230 hybrid contribution -0.037 -0.251 1.143 1.171 sum 5.404 -4.229 -1.472 7.018 Atomic orbital electron populations 1.21816 0.93301 1.02816 1.02401 1.21393 0.97292 0.93825 1.01869 1.21299 0.90713 0.98506 1.01956 0.90246 1.21526 1.01990 1.00750 0.93589 1.21264 0.91275 0.82604 0.75624 1.90522 1.70311 1.33057 1.54628 1.41413 1.01898 1.09960 1.63265 1.18619 1.17377 0.89905 1.21265 0.89944 1.25679 0.94606 0.96921 0.96873 1.69735 1.11928 1.34854 1.34116 0.86757 0.79205 0.81751 0.81636 1.20356 1.18384 1.19362 1.18538 0.85363 0.96522 0.94334 1.21238 0.94478 1.00785 0.98248 1.21015 0.92579 0.99077 0.98891 1.20886 0.84904 1.02864 0.99019 1.98338 1.08845 1.97669 1.98311 1.21116 0.92717 0.98824 0.98337 1.21302 0.94125 1.00166 0.98155 0.90865 0.90566 0.93557 0.91255 0.93943 0.92897 0.92251 0.90073 0.90590 0.87446 0.82919 0.81984 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.67 71.98 0.70 -3.44 16 2 C -0.11 -3.84 4.71 30.59 0.14 -3.69 16 3 C -0.10 -4.37 1.35 -11.54 -0.02 -4.38 16 4 H 0.08 3.58 3.28 -2.38 -0.01 3.57 16 5 C -0.12 -4.52 8.90 71.98 0.64 -3.88 16 6 C 0.50 23.91 4.38 87.66 0.38 24.30 16 7 O -0.60 -30.92 15.66 -3.02 -0.05 -30.97 16 8 N -0.45 -21.29 1.99 -458.89 -0.91 -22.20 16 9 C -0.35 -17.38 7.80 84.02 0.66 -16.73 16 10 H 0.08 4.42 8.06 -2.91 -0.02 4.40 16 11 C 0.07 3.34 4.02 84.91 0.34 3.68 16 12 N -0.87 -44.91 13.96 21.65 0.30 -44.61 16 13 Si 0.88 40.80 25.11 68.60 1.72 42.52 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -13.06 5.69 99.48 0.57 -12.50 16 17 C 0.14 6.22 4.77 38.22 0.18 6.41 16 18 C -0.13 -5.18 9.38 22.40 0.21 -4.97 16 19 C -0.10 -3.16 9.82 22.27 0.22 -2.94 16 20 C -0.05 -1.50 6.32 22.36 0.14 -1.36 16 21 Cl -0.06 -1.48 28.95 -2.72 -0.08 -1.56 16 22 C -0.09 -2.74 9.82 22.27 0.22 -2.52 16 23 C -0.12 -4.35 9.82 22.40 0.22 -4.13 16 24 H 0.07 1.86 6.48 -2.39 -0.02 1.84 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 28 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.48 6.89 -2.38 -0.02 2.46 16 31 H 0.08 2.56 6.38 -2.39 -0.02 2.54 16 32 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 35 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -57.79 308.62 5.96 -51.83 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.94 Total: 18.64 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.04 Total: -13.66 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -0.61 Total: -66.81 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.72 Total: 42.52 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -57.79 5.96 -51.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592650648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.095 kcal (2) G-P(sol) polarization free energy of solvation -57.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds