Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47105 * 2 1 4 4 C 1.50702 * 109.47456 * 120.00062 * 2 1 3 5 5 O 1.21275 * 119.99681 * 85.42101 * 4 2 1 6 6 N 1.34778 * 119.99707 * 265.42965 * 4 2 1 7 7 C 1.47013 * 125.64990 * 354.92949 * 6 4 2 8 8 C 1.54380 * 107.28703 * 181.13361 * 7 6 4 9 9 C 1.55158 * 102.91891 * 22.13722 * 8 7 6 10 10 O 1.42904 * 110.99888 * 82.64371 * 9 8 7 11 11 C 1.50699 * 111.00491 * 206.45247 * 9 8 7 12 12 H 1.07999 * 119.99865 * 115.41922 * 11 9 8 13 13 C 1.37881 * 119.99797 * 295.14643 * 11 9 8 14 14 N 1.31513 * 120.00047 * 0.27736 * 13 11 9 15 15 Si 1.86805 * 119.99703 * 180.27382 * 13 11 9 16 16 H 1.48504 * 109.47017 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.46838 * 120.00244 * 15 13 11 18 18 H 1.48505 * 109.47040 * 240.00129 * 15 13 11 19 19 C 1.47427 * 125.64312 * 174.98167 * 6 4 2 20 20 C 1.53002 * 109.46925 * 240.00531 * 2 1 3 21 21 F 1.39898 * 109.46521 * 299.99564 * 20 2 1 22 22 F 1.39894 * 109.47625 * 59.99727 * 20 2 1 23 23 F 1.39898 * 109.46921 * 180.02562 * 20 2 1 24 24 H 1.08997 * 109.47602 * 175.72543 * 1 2 3 25 25 H 1.09007 * 109.47213 * 295.72932 * 1 2 3 26 26 H 1.09006 * 109.47441 * 55.72418 * 1 2 3 27 27 H 1.08999 * 109.88765 * 300.51591 * 7 6 4 28 28 H 1.08996 * 109.88482 * 61.68324 * 7 6 4 29 29 H 1.09000 * 110.70211 * 263.79596 * 8 7 6 30 30 H 1.08997 * 110.75632 * 140.50921 * 8 7 6 31 31 H 0.96703 * 114.00497 * 64.58092 * 10 9 8 32 32 H 0.97010 * 119.99575 * 179.97438 * 14 13 11 33 33 H 1.08997 * 110.36784 * 36.99029 * 19 6 4 34 34 H 1.09003 * 110.45430 * 274.71521 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1555 -1.9169 1.2262 6 7 2.3447 -0.0049 2.3355 7 6 2.3436 1.4611 2.4449 8 6 2.7923 1.8145 3.8792 9 6 3.5637 0.5440 4.3242 10 8 4.9087 0.5663 3.8420 11 6 3.5329 0.3906 5.8231 12 1 3.0282 -0.4535 6.2693 13 6 4.1537 1.3251 6.6246 14 7 4.7682 2.3531 6.0812 15 14 4.1220 1.1309 8.4822 16 1 3.3714 -0.0999 8.8385 17 1 5.5126 1.0286 8.9930 18 1 3.4563 2.3101 9.0919 19 6 2.7451 -0.5757 3.6345 20 6 2.0399 -0.7212 -1.2493 21 9 1.5736 -2.0401 -1.2493 22 9 1.5736 -0.0617 -2.3916 23 9 3.4389 -0.7217 -1.2490 24 1 -0.3634 -1.0247 -0.0766 25 1 -0.3634 0.4462 0.9258 26 1 -0.3634 0.5788 -0.8492 27 1 3.0408 1.8873 1.7235 28 1 1.3397 1.8456 2.2649 29 1 1.9288 1.9863 4.5217 30 1 3.4502 2.6835 3.8750 31 1 5.4464 1.2815 4.2089 32 1 5.2047 3.0108 6.6452 33 1 3.3634 -1.4609 3.4856 34 1 1.8657 -0.8237 4.2289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = -242.863804 kcal Electronic energy + Delta-G solvation = -23363.827214 eV Core-core repulsion = 19267.531621 eV Total energy + Delta-G solvation = -4096.295593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.04292 -47.57948 -47.42383 -39.79728 -37.46990 -34.50095 -33.83126 -32.24958 -29.87882 -28.45147 -26.55561 -25.47749 -23.38037 -22.04554 -19.90196 -19.30516 -18.54582 -18.30111 -17.26640 -17.24502 -16.70160 -15.20910 -15.04103 -14.91698 -14.61011 -14.37960 -14.15267 -13.92711 -13.85959 -13.65710 -13.59373 -13.24257 -13.12132 -12.74644 -12.48582 -12.07564 -11.99131 -11.76536 -11.49954 -11.41080 -11.39172 -10.96592 -10.70669 -10.51266 -10.13452 -9.63945 -9.48214 -8.75889 -8.30059 -8.17982 -6.36466 -4.44425 2.45808 2.86503 3.14404 3.20658 3.24459 3.29341 3.71815 4.05533 4.13623 4.21615 4.66372 4.79096 4.86967 4.91738 5.33359 5.38587 5.43811 5.60254 5.71054 5.80095 5.90026 6.12607 6.32068 6.51229 6.74793 6.81815 7.19627 7.23600 7.66223 7.86261 7.92930 8.32161 8.58540 9.24357 9.35701 10.71309 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.039576 B = 0.004401 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.324952 B = 6360.246158 C = 6391.793345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.160 4.160 3 H 0.129 0.871 4 C 0.530 3.470 5 O -0.533 6.533 6 N -0.598 5.598 7 C 0.093 3.907 8 C -0.137 4.137 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.119 3.881 20 C 0.470 3.530 21 F -0.166 7.166 22 F -0.184 7.184 23 F -0.178 7.178 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.384 0.616 32 H 0.269 0.731 33 H 0.074 0.926 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 1.396 -10.515 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 H 0.147 0.853 4 C 0.315 3.685 5 O -0.410 6.410 6 N -0.330 5.330 7 C -0.030 4.030 8 C -0.176 4.176 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.002 4.002 20 C 0.415 3.585 21 F -0.147 7.147 22 F -0.165 7.165 23 F -0.159 7.159 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.235 0.765 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.555 0.334 -10.889 13.257 hybrid contribution 0.335 0.634 1.091 1.306 sum -7.220 0.968 -9.798 12.209 Atomic orbital electron populations 1.21737 0.89161 1.04644 1.04508 1.22595 1.01440 1.02700 0.91511 0.85257 1.19234 0.78919 0.87133 0.83184 1.90764 1.53993 1.13487 1.82773 1.48522 1.64887 1.08123 1.11439 1.22307 0.99738 0.79627 1.01298 1.23216 1.01255 1.02178 0.90928 1.19607 0.80238 0.88069 0.91367 1.86134 1.24064 1.57362 1.71626 1.21485 1.35767 1.09826 0.90320 0.91554 1.24989 0.93979 0.94364 0.99625 1.69652 1.35422 1.12428 1.36072 0.86345 0.78047 0.78264 0.84232 1.19543 1.20720 1.20802 1.22461 0.98222 0.98443 0.81048 1.19896 0.75768 0.78206 0.84637 1.93226 1.88175 1.36734 1.96598 1.93165 1.88566 1.80937 1.53841 1.93218 1.29602 1.96422 1.96704 0.90430 0.89812 0.90171 0.92073 0.92487 0.91130 0.89474 0.76533 0.92135 0.90753 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.93 37.15 0.33 -1.15 16 2 C -0.16 -2.14 2.42 -91.77 -0.22 -2.36 16 3 H 0.13 1.45 6.95 -51.93 -0.36 1.09 16 4 C 0.53 9.54 6.58 -10.98 -0.07 9.47 16 5 O -0.53 -11.42 15.59 5.56 0.09 -11.33 16 6 N -0.60 -11.16 3.33 -170.50 -0.57 -11.72 16 7 C 0.09 1.53 6.00 -3.04 -0.02 1.51 16 8 C -0.14 -2.74 5.52 -24.87 -0.14 -2.88 16 9 C 0.25 5.73 0.88 -89.63 -0.08 5.65 16 10 O -0.58 -14.48 13.17 -35.23 -0.46 -14.94 16 11 C -0.54 -13.41 8.25 -34.44 -0.28 -13.70 16 12 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 13 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 14 N -0.90 -22.27 10.76 55.43 0.60 -21.68 16 15 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.12 2.55 6.11 -2.53 -0.02 2.54 16 20 C 0.47 6.77 2.57 37.16 0.10 6.87 16 21 F -0.17 -2.66 15.32 2.25 0.03 -2.63 16 22 F -0.18 -2.30 16.88 2.25 0.04 -2.26 16 23 F -0.18 -2.91 17.02 2.25 0.04 -2.87 16 24 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 27 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 30 H 0.09 1.83 7.69 -51.93 -0.40 1.43 16 31 H 0.38 9.55 7.24 45.56 0.33 9.88 16 32 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 33 H 0.07 1.72 7.99 -51.93 -0.41 1.30 16 34 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -27.98 297.29 -4.56 -32.54 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.29 Total: 8.19 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.50 Total: 7.66 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.03 Total: -33.40 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.38 Total: -26.27 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.11 Total: -7.75 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.98 -4.56 -32.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.322 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds