Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00014 * 2 1 4 4 H 1.08995 * 109.47637 * 330.00304 * 3 2 1 5 5 C 1.53005 * 109.47257 * 210.00353 * 3 2 1 6 6 C 1.50691 * 109.47262 * 65.00341 * 5 3 2 7 7 O 1.21294 * 119.99978 * 359.97438 * 6 5 3 8 8 N 1.34776 * 120.00152 * 180.02562 * 6 5 3 9 9 C 1.37100 * 119.99818 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99523 * 224.28409 * 9 8 6 11 11 C 1.38947 * 120.00512 * 44.27941 * 9 8 6 12 12 N 1.31415 * 119.99682 * 18.21806 * 11 9 8 13 13 Si 1.86793 * 120.00330 * 198.21551 * 11 9 8 14 14 H 1.48497 * 109.47099 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47037 * 120.00473 * 13 11 9 16 16 H 1.48503 * 109.47187 * 240.00104 * 13 11 9 17 17 C 1.46494 * 119.99972 * 359.97438 * 8 6 5 18 18 C 1.52997 * 117.49863 * 183.22831 * 17 8 6 19 19 C 1.52996 * 60.00139 * 252.51022 * 18 17 8 20 20 C 1.52999 * 109.46806 * 90.00484 * 3 2 1 21 21 F 1.39904 * 109.47529 * 179.97438 * 20 3 2 22 22 F 1.39902 * 109.47362 * 299.99803 * 20 3 2 23 23 F 1.39899 * 109.47513 * 60.00280 * 20 3 2 24 24 H 1.09000 * 109.47730 * 59.99393 * 1 2 3 25 25 H 1.08999 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46984 * 299.99977 * 1 2 3 27 27 H 1.08998 * 109.47034 * 185.00659 * 5 3 2 28 28 H 1.09003 * 109.46948 * 305.00235 * 5 3 2 29 29 H 0.97000 * 120.00140 * 174.92738 * 12 11 9 30 30 H 1.08999 * 115.55057 * 328.93579 * 17 8 6 31 31 H 1.09007 * 117.50270 * 359.97438 * 18 17 8 32 32 H 1.08999 * 117.50330 * 145.02165 * 18 17 8 33 33 H 1.08997 * 117.49953 * 252.51198 * 19 18 17 34 34 H 1.08997 * 117.52119 * 107.47583 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 3.3588 1.2633 -0.7213 6 6 3.1415 0.9238 -2.1733 7 8 2.0184 0.7337 -2.5902 8 7 4.1951 0.8303 -3.0086 9 6 3.9973 0.5219 -4.3297 10 1 4.6343 -0.2017 -4.8165 11 6 2.9772 1.1402 -5.0423 12 7 2.4403 2.2514 -4.5908 13 14 2.3691 0.3921 -6.6422 14 1 3.1312 -0.8497 -6.9291 15 1 0.9248 0.0689 -6.5201 16 1 2.5674 1.3620 -7.7491 17 6 5.5516 1.0593 -2.5050 18 6 6.6980 1.0133 -3.5171 19 6 6.5178 -0.1270 -2.5131 20 6 2.2177 1.7712 1.4425 21 9 2.7872 3.0490 1.4427 22 9 0.9845 1.8098 2.1021 23 9 3.0716 0.8806 2.1019 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 3.8426 2.2369 -0.6443 28 1 3.9930 0.5051 -0.2619 29 1 1.7806 2.7227 -5.1232 30 1 5.6340 1.7700 -1.6827 31 1 6.4431 0.8122 -4.5577 32 1 7.5350 1.6939 -3.3609 33 1 7.2361 -0.1965 -1.6963 34 1 6.1440 -1.0779 -2.8926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593038921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -193.141550 kcal Electronic energy + Delta-G solvation = -23621.679377 eV Core-core repulsion = 19527.539903 eV Total energy + Delta-G solvation = -4094.139474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.94155 -47.49289 -47.38568 -38.90421 -37.65628 -35.96037 -32.93615 -31.89204 -30.77990 -27.07468 -26.20325 -24.63084 -22.17312 -21.66256 -21.13036 -19.34672 -18.49459 -18.29190 -17.74658 -16.28080 -16.09949 -15.97216 -15.04018 -14.64540 -14.33650 -14.27785 -14.13703 -14.09493 -13.87207 -13.67896 -13.58859 -13.57993 -13.36556 -12.81919 -12.01925 -11.88345 -11.74940 -11.36251 -11.06127 -10.94807 -10.87891 -10.84242 -10.49615 -10.17678 -9.98551 -9.75016 -9.54652 -8.74138 -8.07459 -7.04658 -6.14132 -3.88667 2.85765 3.27813 3.38057 3.39362 3.63008 3.91832 4.08265 4.13176 4.29370 4.54878 4.76258 4.85370 5.17844 5.26190 5.31597 5.56614 5.57976 5.65520 5.75863 5.76477 5.92751 6.01099 6.05712 6.18020 6.23645 6.45453 6.74423 6.92626 7.17091 7.60623 8.24804 9.03246 9.12262 9.63382 10.25028 10.95255 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.006644 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.287333 B = 4213.001465 C = 5098.341334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.344 6.344 3 C 0.076 3.924 4 H 0.113 0.887 5 C -0.139 4.139 6 C 0.494 3.506 7 O -0.525 6.525 8 N -0.428 5.428 9 C -0.345 4.345 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.836 5.836 13 Si 0.912 3.088 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.286 1.286 17 C 0.072 3.928 18 C -0.173 4.173 19 C -0.207 4.207 20 C 0.426 3.574 21 F -0.182 7.182 22 F -0.188 7.188 23 F -0.178 7.178 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.263 0.737 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -0.183 9.614 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.015 3.985 4 H 0.131 0.869 5 C -0.180 4.180 6 C 0.281 3.719 7 O -0.402 6.402 8 N -0.149 5.149 9 C -0.472 4.472 10 H 0.095 0.905 11 C -0.136 4.136 12 N -0.470 5.470 13 Si 0.740 3.260 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.212 1.212 17 C -0.034 4.034 18 C -0.211 4.211 19 C -0.246 4.246 20 C 0.371 3.629 21 F -0.163 7.163 22 F -0.169 7.169 23 F -0.160 7.160 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.865 -0.338 9.412 9.458 hybrid contribution -0.338 0.162 -0.394 0.543 sum 0.527 -0.176 9.019 9.036 Atomic orbital electron populations 1.22990 0.80270 1.03236 1.00694 1.88034 1.20674 1.23694 1.93699 1.22945 0.99517 0.89245 0.86791 0.86946 1.21811 0.94334 1.04173 0.97649 1.19217 0.85787 0.82144 0.84755 1.90528 1.22495 1.50611 1.76534 1.42694 1.01301 1.63149 1.07716 1.18882 1.18719 1.24065 0.85520 0.90453 1.25223 0.96603 0.93961 0.97835 1.69827 1.26205 1.13737 1.37208 0.86151 0.79230 0.79164 0.81498 1.19590 1.20695 1.21235 1.21717 0.83611 0.98592 0.99469 1.23061 0.99161 1.00926 0.97911 1.23315 1.03903 0.95156 1.02211 1.21821 0.73792 0.75250 0.92036 1.93170 1.85210 1.40962 1.97005 1.93129 1.43725 1.96234 1.83828 1.93164 1.71091 1.68245 1.83493 0.92457 0.89354 0.93854 0.88354 0.88587 0.92695 0.88021 0.87484 0.89778 0.89737 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.70 101.05 1.08 1.46 16 2 O -0.34 -6.38 9.51 -49.66 -0.47 -6.85 16 3 C 0.08 1.34 1.72 -26.73 -0.05 1.30 16 4 H 0.11 2.05 7.60 -51.93 -0.39 1.66 16 5 C -0.14 -2.61 3.79 -27.89 -0.11 -2.72 16 6 C 0.49 12.05 6.84 -10.99 -0.08 11.98 16 7 O -0.52 -14.58 13.18 -8.88 -0.12 -14.70 16 8 N -0.43 -10.43 2.83 -107.74 -0.31 -10.74 16 9 C -0.35 -9.23 7.92 -14.93 -0.12 -9.35 16 10 H 0.08 2.02 7.26 -52.48 -0.38 1.64 16 11 C 0.07 2.03 4.38 -17.47 -0.08 1.96 16 12 N -0.84 -24.01 11.74 55.50 0.65 -23.36 16 13 Si 0.91 21.60 29.59 -169.99 -5.03 16.57 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.07 1.41 5.87 -67.94 -0.40 1.01 16 18 C -0.17 -3.06 9.80 -26.73 -0.26 -3.32 16 19 C -0.21 -3.49 10.36 -26.73 -0.28 -3.76 16 20 C 0.43 6.62 2.85 37.16 0.11 6.72 16 21 F -0.18 -2.76 16.71 2.25 0.04 -2.72 16 22 F -0.19 -2.81 15.50 2.25 0.03 -2.78 16 23 F -0.18 -2.80 16.83 2.25 0.04 -2.76 16 24 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.58 6.49 -51.92 -0.34 0.24 16 27 H 0.10 1.68 7.09 -51.93 -0.37 1.31 16 28 H 0.10 1.67 7.91 -51.93 -0.41 1.26 16 29 H 0.26 7.23 8.32 -40.82 -0.34 6.90 16 30 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 31 H 0.11 2.10 6.72 -51.92 -0.35 1.75 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -31.07 300.47 -4.65 -35.73 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.85 Total: 1.81 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.17 Total: 5.28 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.35 Total: -34.10 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.59 Total: -21.55 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.11 Total: -8.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.07 -4.65 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593038921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.413 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds