Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46636 * 2 1 4 4 C 1.50700 * 109.47297 * 119.99195 * 2 1 3 5 5 O 1.21285 * 119.99858 * 106.33997 * 4 2 1 6 6 N 1.34773 * 120.00076 * 286.33690 * 4 2 1 7 7 C 1.46492 * 120.00253 * 4.99804 * 6 4 2 8 8 C 1.46504 * 119.99832 * 184.99660 * 6 4 2 9 9 C 1.50697 * 109.47593 * 270.00309 * 8 6 4 10 10 H 1.08006 * 119.99501 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00552 * 180.02562 * 9 8 6 12 12 N 1.31522 * 119.99325 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00185 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47372 * 60.00071 * 13 11 9 15 15 H 1.48505 * 109.47112 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47360 * 299.99679 * 13 11 9 17 17 C 1.50695 * 109.47172 * 239.99824 * 2 1 3 18 18 C 1.38236 * 119.98808 * 299.72093 * 17 2 1 19 19 C 1.38216 * 120.01692 * 179.73276 * 18 17 2 20 20 C 1.38357 * 119.98178 * 0.53886 * 19 18 17 21 21 Cl 1.73602 * 120.00825 * 179.70694 * 20 19 18 22 22 C 1.38347 * 119.97490 * 359.73711 * 20 19 18 23 23 C 1.38220 * 119.98606 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.47131 * 290.22210 * 1 2 3 25 25 H 1.08998 * 109.47796 * 50.23078 * 1 2 3 26 26 H 1.09010 * 109.46524 * 170.23181 * 1 2 3 27 27 H 1.08997 * 109.47320 * 267.18748 * 7 6 4 28 28 H 1.09000 * 109.47180 * 27.19460 * 7 6 4 29 29 H 1.09006 * 109.46941 * 147.18690 * 7 6 4 30 30 H 1.09005 * 109.47264 * 30.00132 * 8 6 4 31 31 H 1.09001 * 109.46883 * 149.99714 * 8 6 4 32 32 H 0.97006 * 119.99180 * 180.02562 * 12 11 9 33 33 H 1.08007 * 119.99473 * 0.02562 * 18 17 2 34 34 H 1.07998 * 120.00905 * 180.27887 * 19 18 17 35 35 H 1.07996 * 120.00740 * 179.97438 * 22 20 19 36 36 H 1.08001 * 119.99311 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7102 1.2305 5 8 2.5131 -1.8198 1.1365 6 7 1.9475 -0.1125 2.4355 7 6 1.2689 1.1792 2.5662 8 6 2.5338 -0.7545 3.6146 9 6 1.5066 -1.6449 4.2649 10 1 0.5160 -1.7249 3.8418 11 6 1.8311 -2.3574 5.3998 12 7 3.0375 -2.2603 5.9145 13 14 0.5575 -3.4606 6.2061 14 1 0.1223 -4.5019 5.2410 15 1 1.1519 -4.1115 7.4013 16 1 -0.6141 -2.6458 6.6170 17 6 2.0323 -0.7104 -1.2304 18 6 1.7030 -2.0356 -1.4460 19 6 2.1588 -2.6861 -2.5770 20 6 2.9541 -2.0140 -3.4880 21 17 3.5333 -2.8327 -4.9051 22 6 3.2881 -0.6894 -3.2689 23 6 2.8267 -0.0382 -2.1404 24 1 -0.3634 0.3552 0.9644 25 1 -0.3634 0.6574 -0.7898 26 1 -0.3633 -1.0129 -0.1744 27 1 1.9978 1.9839 2.4704 28 1 0.5165 1.2753 1.7834 29 1 0.7873 1.2395 3.5423 30 1 3.3939 -1.3524 3.3128 31 1 2.8532 0.0096 4.3233 32 1 3.2659 -2.7619 6.7128 33 1 1.0854 -2.5614 -0.7327 34 1 1.8977 -3.7201 -2.7476 35 1 3.9092 -0.1644 -3.9794 36 1 3.0870 0.9959 -1.9694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593418368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -18.463229 kcal Electronic energy + Delta-G solvation = -19541.346619 eV Core-core repulsion = 16437.347670 eV Total energy + Delta-G solvation = -3103.998949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05761 -38.50153 -36.50648 -34.85180 -33.92166 -32.47751 -31.02556 -29.35931 -27.63414 -26.08939 -24.38268 -23.01097 -22.74722 -21.03514 -18.49232 -17.06503 -16.53216 -16.46749 -15.74809 -15.14241 -14.81277 -14.46291 -14.34211 -13.80121 -13.50479 -13.41908 -13.06123 -12.94777 -12.44485 -12.08311 -12.00112 -11.75925 -11.60201 -11.34623 -11.23410 -11.12164 -10.97907 -10.80330 -10.73192 -10.56437 -10.15289 -9.65040 -9.04952 -8.79544 -8.48972 -8.43619 -7.65695 -6.05013 -4.09773 1.17423 1.38095 2.11846 3.30681 3.34768 3.35797 3.40824 3.61682 4.03065 4.43680 4.65689 4.77967 4.91266 5.06281 5.23853 5.27810 5.31352 5.41733 5.48438 5.54699 5.73069 5.77776 5.87629 5.90955 6.02686 6.11500 6.21759 6.27197 6.36899 6.65397 6.85086 7.04428 7.41703 7.51954 7.90914 8.22277 8.39417 8.88664 9.06633 9.55192 11.03090 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023682 B = 0.004016 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.043488 B = 6970.181372 C = 7521.729720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 H 0.097 0.903 4 C 0.508 3.492 5 O -0.531 6.531 6 N -0.601 5.601 7 C 0.070 3.930 8 C 0.247 3.753 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.057 4.057 18 C -0.063 4.063 19 C -0.114 4.114 20 C -0.037 4.037 21 Cl -0.083 7.083 22 C -0.117 4.117 23 C -0.103 4.103 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 7.105 -16.980 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.115 0.885 4 C 0.294 3.706 5 O -0.408 6.408 6 N -0.332 5.332 7 C -0.074 4.074 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.057 4.057 18 C -0.082 4.082 19 C -0.133 4.133 20 C -0.063 4.063 21 Cl -0.054 7.054 22 C -0.136 4.136 23 C -0.121 4.121 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.069 6.377 -16.959 18.376 hybrid contribution -0.516 -0.633 0.520 0.969 sum -3.585 5.743 -16.439 17.778 Atomic orbital electron populations 1.21959 0.92214 1.03211 1.02947 1.20356 0.97720 0.99987 0.91698 0.88505 1.20083 0.80043 0.86403 0.84103 1.90691 1.45382 1.19011 1.85720 1.48107 1.55511 1.20652 1.08973 1.21921 0.96789 0.85422 1.03220 1.19278 0.94469 0.92844 0.80660 1.21377 0.98476 1.26482 1.10083 0.92523 1.24937 0.95524 0.96689 0.96958 1.69928 1.19039 1.42174 1.22292 0.86564 0.81345 0.80847 0.78691 1.20191 1.21173 1.20257 1.19541 0.97113 0.94407 0.94649 1.21020 0.98339 0.93713 0.95094 1.21038 0.98061 1.00362 0.93805 1.20896 1.01225 0.93679 0.90516 1.98349 1.87939 1.79320 1.39787 1.20899 1.01239 0.92871 0.98604 1.20963 0.97435 1.00065 0.93667 0.90592 0.91675 0.91691 0.93797 0.91291 0.90821 0.94022 0.95035 0.92664 0.84729 0.85130 0.85243 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.71 37.16 0.32 -1.42 16 2 C -0.08 -1.08 2.09 -92.93 -0.19 -1.27 16 3 H 0.10 1.14 7.46 -51.93 -0.39 0.75 16 4 C 0.51 10.17 6.85 -10.99 -0.08 10.09 16 5 O -0.53 -12.98 14.30 5.55 0.08 -12.90 16 6 N -0.60 -12.37 2.86 -182.96 -0.52 -12.90 16 7 C 0.07 1.06 9.86 59.84 0.59 1.65 16 8 C 0.25 6.39 5.14 -5.19 -0.03 6.37 16 9 C -0.53 -14.77 9.39 -34.44 -0.32 -15.09 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 13 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.06 -0.81 4.54 -104.62 -0.47 -1.28 16 18 C -0.06 -0.95 7.71 -39.59 -0.31 -1.26 16 19 C -0.11 -1.55 9.83 -39.55 -0.39 -1.94 16 20 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 21 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 22 C -0.12 -1.40 9.83 -39.55 -0.39 -1.79 16 23 C -0.10 -1.26 9.67 -39.59 -0.38 -1.64 16 24 H 0.08 0.90 5.49 -51.93 -0.29 0.62 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.82 7.11 -51.92 -0.37 0.45 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.83 4.16 -51.93 -0.22 0.61 16 29 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 30 H 0.04 1.22 7.50 -51.93 -0.39 0.84 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.13 2.15 7.14 -52.48 -0.37 1.77 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -32.57 317.15 -7.96 -40.52 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.51 Total: -1.27 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.99 Total: -6.66 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.21 Total: -38.74 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.57 -7.96 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593418368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.060 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds