Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47199 * 324.99664 * 7 6 4 9 9 C 1.52996 * 109.47084 * 84.99619 * 7 6 4 10 10 C 1.50695 * 109.47162 * 204.99813 * 7 6 4 11 11 H 1.07999 * 120.00376 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00418 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99687 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00415 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.47193 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47320 * 119.99881 * 14 12 10 17 17 H 1.48506 * 109.47170 * 239.99433 * 14 12 10 18 18 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 19 19 C 1.38239 * 119.98421 * 299.73127 * 18 2 1 20 20 C 1.38215 * 120.01290 * 179.72824 * 19 18 2 21 21 C 1.38353 * 119.98302 * 0.53970 * 20 19 18 22 22 Cl 1.73603 * 120.01230 * 179.74899 * 21 20 19 23 23 C 1.38353 * 119.97682 * 359.73414 * 21 20 19 24 24 C 1.38211 * 119.98231 * 359.97438 * 23 21 20 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47646 * 60.00441 * 9 7 6 30 30 H 1.09000 * 109.47057 * 180.02562 * 9 7 6 31 31 H 1.09002 * 109.47281 * 299.99855 * 9 7 6 32 32 H 0.97003 * 120.00117 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.99800 * 359.97438 * 19 18 2 34 34 H 1.07995 * 120.00911 * 180.27092 * 20 19 18 35 35 H 1.08002 * 120.00831 * 179.97438 * 23 21 20 36 36 H 1.08001 * 119.99375 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4616 9 6 3.5978 -0.4342 3.9944 10 6 1.2656 -0.6655 4.8044 11 1 0.3976 -0.0390 4.6611 12 6 1.5234 -1.2130 6.0433 13 7 2.5807 -1.9755 6.2180 14 14 0.3713 -0.8719 7.4734 15 1 -0.7347 0.0087 7.0189 16 1 -0.1891 -2.1528 7.9741 17 1 1.1219 -0.2000 8.5645 18 6 2.0324 -0.7104 -1.2304 19 6 1.7029 -2.0355 -1.4461 20 6 2.1587 -2.6860 -2.5772 21 6 2.9542 -2.0139 -3.4880 22 17 3.5325 -2.8322 -4.9057 23 6 3.2883 -0.6894 -3.2689 24 6 2.8269 -0.0383 -2.1404 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1492 0.5389 2.5435 29 1 3.5608 0.6386 4.1837 30 1 3.9616 -0.9481 4.8841 31 1 4.2703 -0.6330 3.1599 32 1 2.7623 -2.3605 7.0897 33 1 1.0859 -2.5615 -0.7326 34 1 1.8976 -3.7200 -2.7478 35 1 3.9096 -0.1643 -3.9794 36 1 3.0873 0.9958 -1.9693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593436817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = -35.648581 kcal Electronic energy + Delta-G solvation = -19320.200292 eV Core-core repulsion = 16215.456130 eV Total energy + Delta-G solvation = -3104.744162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99793 -38.45592 -36.53667 -34.84740 -33.85770 -32.32085 -31.06156 -29.57114 -28.38065 -25.29310 -24.59317 -22.83984 -22.19469 -20.48673 -19.26153 -17.37142 -16.98847 -15.96198 -15.58163 -15.29552 -14.92377 -14.31918 -14.25315 -13.59317 -13.48368 -13.44796 -13.14989 -12.64873 -12.39972 -12.13515 -11.90062 -11.69109 -11.41536 -11.22861 -11.11421 -11.01788 -10.95742 -10.79032 -10.71489 -10.31512 -10.26152 -9.10411 -9.05397 -8.90315 -8.58022 -8.51339 -7.92553 -6.14532 -4.23993 1.15102 1.34524 2.09379 3.21691 3.29514 3.31805 3.36077 3.60024 4.13632 4.36921 4.62847 4.77012 4.88140 5.16439 5.17681 5.21365 5.38929 5.43775 5.47888 5.72602 5.75819 5.87832 5.98400 6.12763 6.21442 6.29353 6.61009 6.79701 6.82824 6.94955 7.13580 7.44134 7.54130 7.67381 7.89478 8.13140 8.64426 8.76061 9.10486 9.43887 10.91402 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036658 B = 0.003384 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.638335 B = 8272.710992 C = 8483.596814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 H 0.100 0.900 4 C 0.505 3.495 5 O -0.547 6.547 6 N -0.707 5.707 7 C 0.265 3.735 8 H 0.048 0.952 9 C -0.147 4.147 10 C -0.533 4.533 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.883 5.883 14 Si 0.901 3.099 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.051 4.051 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.038 4.038 22 Cl -0.082 7.082 23 C -0.115 4.115 24 C -0.103 4.103 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.388 0.612 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 4.431 -17.155 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.118 0.882 4 C 0.289 3.711 5 O -0.425 6.425 6 N -0.355 5.355 7 C 0.163 3.837 8 H 0.066 0.934 9 C -0.206 4.206 10 C -0.572 4.572 11 H 0.080 0.920 12 C -0.138 4.138 13 N -0.520 5.520 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.052 4.052 19 C -0.087 4.087 20 C -0.131 4.131 21 C -0.064 4.064 22 Cl -0.054 7.054 23 C -0.134 4.134 24 C -0.121 4.121 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.221 0.779 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.841 3.524 -17.169 17.624 hybrid contribution -0.649 0.477 0.814 1.145 sum -2.490 4.002 -16.355 17.021 Atomic orbital electron populations 1.21776 0.92135 1.03114 1.02644 1.20405 0.97704 1.00233 0.91689 0.88172 1.20200 0.81202 0.85079 0.84653 1.90683 1.38521 1.26613 1.86672 1.46511 1.51518 1.31121 1.06318 1.18735 0.91506 0.93333 0.80125 0.93400 1.22078 0.97963 0.99263 1.01283 1.21251 1.09743 1.32017 0.94161 0.92036 1.24896 0.95439 0.94702 0.98716 1.69917 1.26217 1.32088 1.23823 0.86400 0.80611 0.78112 0.82006 1.19730 1.20870 1.20884 1.19507 0.96778 0.94296 0.94571 1.20938 0.98564 0.93774 0.95409 1.21009 0.97976 1.00310 0.93808 1.20885 1.01292 0.93688 0.90546 1.98350 1.87973 1.79327 1.39700 1.20915 1.01077 0.92857 0.98562 1.20965 0.97366 1.00127 0.93654 0.91827 0.91288 0.91751 0.77944 0.95504 0.89168 0.96689 0.92621 0.85110 0.85140 0.85219 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.91 37.16 0.33 -1.24 16 2 C -0.08 -1.07 2.90 -92.92 -0.27 -1.34 16 3 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 4 C 0.50 9.56 6.98 -10.98 -0.08 9.49 16 5 O -0.55 -12.62 14.75 5.56 0.08 -12.54 16 6 N -0.71 -14.11 4.96 -54.94 -0.27 -14.39 16 7 C 0.26 6.61 2.56 -69.09 -0.18 6.44 16 8 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 9 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 10 C -0.53 -13.87 8.73 -34.44 -0.30 -14.17 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 13 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 14 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.05 -0.70 4.40 -104.62 -0.46 -1.16 16 19 C -0.07 -0.98 7.92 -39.59 -0.31 -1.29 16 20 C -0.11 -1.47 9.83 -39.55 -0.39 -1.85 16 21 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 22 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 23 C -0.12 -1.35 9.83 -39.55 -0.39 -1.74 16 24 C -0.10 -1.24 9.67 -39.59 -0.38 -1.62 16 25 H 0.06 0.76 7.40 -51.93 -0.38 0.38 16 26 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.39 6.63 7.96 -40.82 -0.32 6.31 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.13 1.91 7.51 -52.49 -0.39 1.52 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.24 7.95 -52.49 -0.42 0.83 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -30.19 319.96 -8.38 -38.57 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.69 Total: 5.56 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.43 Total: -10.86 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.35 Total: -38.46 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.19 -8.38 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593436817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.917 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds