Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80995 * 1 3 3 C 1.76195 * 100.00021 * 2 1 4 4 C 1.39754 * 120.49250 * 180.02562 * 3 2 1 5 5 C 1.38055 * 118.48593 * 179.97438 * 4 3 2 6 6 N 1.32536 * 119.30171 * 0.02562 * 5 4 3 7 7 C 1.32483 * 120.94783 * 359.97438 * 6 5 4 8 8 N 1.38399 * 119.18059 * 180.02562 * 7 6 5 9 9 C 1.47835 * 111.00122 * 120.84436 * 8 7 6 10 10 C 1.54914 * 104.79505 * 213.63757 * 9 8 7 11 11 C 1.55146 * 101.65148 * 37.07334 * 10 9 8 12 12 O 1.42891 * 110.70706 * 82.72697 * 11 10 9 13 13 C 1.50700 * 110.70123 * 205.96323 * 11 10 9 14 14 H 1.07998 * 120.00445 * 351.81424 * 13 11 10 15 15 C 1.37884 * 119.99599 * 171.81123 * 13 11 10 16 16 N 1.31515 * 119.99858 * 5.98927 * 15 13 11 17 17 Si 1.86803 * 119.99726 * 185.98361 * 15 13 11 18 18 H 1.48499 * 109.46828 * 94.99367 * 17 15 13 19 19 H 1.48501 * 109.46858 * 214.98787 * 17 15 13 20 20 H 1.48494 * 109.47222 * 334.99200 * 17 15 13 21 21 C 1.47446 * 110.99343 * 0.02562 * 8 7 6 22 22 N 1.32459 * 121.64842 * 0.02562 * 7 6 5 23 23 H 1.09004 * 109.47137 * 299.99803 * 1 2 3 24 24 H 1.08998 * 109.47483 * 59.99909 * 1 2 3 25 25 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.75777 * 359.95514 * 4 3 2 27 27 H 1.07998 * 120.34465 * 180.02562 * 5 4 3 28 28 H 1.08998 * 110.37811 * 332.46522 * 9 8 7 29 29 H 1.08997 * 110.37626 * 94.81076 * 9 8 7 30 30 H 1.09002 * 110.98989 * 278.97779 * 10 9 8 31 31 H 1.09005 * 110.98617 * 155.15987 * 10 9 8 32 32 H 0.96698 * 114.00170 * 184.94564 * 12 11 10 33 33 H 0.96999 * 119.99262 * 179.97438 * 16 15 13 34 34 H 1.09004 * 109.88383 * 242.66342 * 21 8 7 35 35 H 1.08997 * 109.89108 * 3.85100 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4250 2.2244 -0.0005 5 6 3.6170 3.5916 -0.0011 6 7 2.5627 4.3946 -0.0005 7 6 1.3322 3.9036 0.0000 8 7 0.2576 4.7757 0.0000 9 6 -0.6001 4.5598 -1.1846 10 6 -1.1402 5.9666 -1.5437 11 6 0.0878 6.8624 -1.2331 12 8 1.0029 6.8634 -2.3306 13 6 -0.3475 8.2659 -0.8990 14 1 -1.3795 8.5565 -1.0284 15 6 0.5720 9.1790 -0.4279 16 7 1.8478 8.8633 -0.3813 17 14 0.0054 10.8647 0.1441 18 1 -0.1995 10.8453 1.6147 19 1 1.0372 11.8763 -0.1986 20 1 -1.2716 11.2124 -0.5292 21 6 0.7149 6.1775 -0.0012 22 7 1.1047 2.5987 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 4.2673 1.5485 -0.0002 27 1 4.6158 4.0023 -0.0019 28 1 -0.0130 4.1567 -2.0098 29 1 -1.4231 3.8884 -0.9399 30 1 -1.9875 6.2326 -0.9116 31 1 -1.4087 6.0241 -2.5986 32 1 1.8226 7.3468 -2.1588 33 1 2.4946 9.5059 -0.0502 34 1 0.3829 6.6765 0.9092 35 1 1.8021 6.2128 -0.0707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593479025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = 22.348723 kcal Electronic energy + Delta-G solvation = -20228.908045 eV Core-core repulsion = 17161.015292 eV Total energy + Delta-G solvation = -3067.892752 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81442 -38.23920 -34.77513 -33.53099 -32.18881 -31.68943 -29.18236 -28.85961 -27.82238 -25.16962 -24.11067 -23.19405 -20.77747 -19.63168 -17.95006 -17.39225 -16.98135 -15.99150 -15.44295 -15.11952 -15.01048 -14.40031 -14.07879 -13.97010 -13.76817 -13.43595 -12.92232 -12.67534 -12.44868 -12.10866 -11.62330 -11.48180 -11.02747 -10.98563 -10.90681 -10.82591 -10.71244 -10.49718 -10.37866 -10.08640 -9.78497 -9.27349 -8.90153 -8.61570 -8.30065 -7.94636 -7.61778 -6.22258 -4.29896 1.12135 1.30666 1.40006 2.04887 3.22970 3.30793 3.34066 3.74308 4.07128 4.30559 4.52683 4.95315 5.05404 5.06648 5.16975 5.24740 5.30195 5.53746 5.64213 5.75169 5.77977 5.90420 6.12129 6.21283 6.39827 6.62546 6.79393 6.89394 7.01537 7.17452 7.42900 7.53450 7.76504 7.81586 8.10901 8.48959 8.73129 9.35395 9.46113 10.84984 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032422 B = 0.004746 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.404930 B = 5898.576941 C = 6365.876110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.066 6.066 3 C 0.181 3.819 4 C -0.256 4.256 5 C 0.185 3.815 6 N -0.538 5.538 7 C 0.519 3.481 8 N -0.462 5.462 9 C 0.069 3.931 10 C -0.116 4.116 11 C 0.241 3.759 12 O -0.589 6.589 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.072 3.928 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.027 3.973 22 N -0.541 5.541 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.144 0.856 27 H 0.169 0.831 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.382 0.618 33 H 0.268 0.732 34 H 0.079 0.921 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -14.351 0.916 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.171 5.829 3 C -0.078 4.078 4 C -0.286 4.286 5 C 0.017 3.983 6 N -0.258 5.258 7 C 0.161 3.839 8 N -0.181 5.181 9 C -0.056 4.056 10 C -0.154 4.154 11 C 0.200 3.800 12 O -0.398 6.398 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.132 4.132 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.099 4.099 22 N -0.264 5.264 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.161 0.839 27 H 0.186 0.814 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.760 -15.054 1.137 15.116 hybrid contribution 0.532 1.866 0.263 1.958 sum 1.291 -13.188 1.400 13.324 Atomic orbital electron populations 1.23422 0.93462 1.05759 1.07459 1.85564 1.08564 0.97765 1.91038 1.23230 0.91817 0.98618 0.94171 1.22164 0.96871 0.97940 1.11639 1.23025 0.98196 0.89162 0.87892 1.68539 0.99071 1.39694 1.18489 1.21341 0.88597 0.86994 0.87007 1.60191 1.13291 1.06666 1.37955 1.22876 0.95256 0.99072 0.88443 1.22751 0.98945 0.92525 1.01215 1.19666 0.85026 0.92819 0.82458 1.86098 1.33270 1.78328 1.42082 1.21499 0.95869 0.95627 1.44476 0.91757 1.25045 0.94806 0.98884 0.94427 1.69734 1.00846 1.36180 1.46094 0.86454 0.78598 0.83212 0.79018 1.20508 1.21101 1.19752 1.23963 1.03774 0.80332 1.01807 1.68330 1.33787 1.02976 1.21328 0.89063 0.89118 0.88259 0.83853 0.81412 0.93500 0.90598 0.90136 0.91014 0.76826 0.92222 0.90238 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.68 101.05 0.98 -0.41 16 2 S -0.07 -0.78 22.74 -107.50 -2.44 -3.23 16 3 C 0.18 2.81 7.01 -16.49 -0.12 2.70 16 4 C -0.26 -3.58 9.94 -39.08 -0.39 -3.97 16 5 C 0.19 2.89 11.28 -17.32 -0.20 2.69 16 6 N -0.54 -10.81 7.94 -14.02 -0.11 -10.92 16 7 C 0.52 10.69 6.92 -322.88 -2.23 8.45 16 8 N -0.46 -10.01 5.25 -172.23 -0.90 -10.91 16 9 C 0.07 1.37 6.40 -2.30 -0.01 1.36 16 10 C -0.12 -2.48 6.22 -24.59 -0.15 -2.63 16 11 C 0.24 5.98 0.85 -89.97 -0.08 5.90 16 12 O -0.59 -15.38 13.08 -35.23 -0.46 -15.85 16 13 C -0.54 -14.27 8.14 -34.44 -0.28 -14.55 16 14 H 0.06 1.70 7.79 -52.49 -0.41 1.29 16 15 C 0.07 1.88 5.22 -17.82 -0.09 1.79 16 16 N -0.89 -23.66 11.02 55.43 0.61 -23.05 16 17 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.03 0.65 5.08 -2.86 -0.01 0.64 16 22 N -0.54 -9.85 8.98 -12.71 -0.11 -9.96 16 23 H 0.09 1.04 8.14 -51.91 -0.42 0.62 16 24 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 25 H 0.10 0.76 8.14 -51.91 -0.42 0.33 16 26 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.63 8.04 -51.93 -0.42 1.22 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.38 10.18 7.51 45.56 0.34 10.52 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.08 2.06 7.79 -51.93 -0.40 1.66 16 35 H 0.11 2.82 5.64 -51.93 -0.29 2.53 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -29.10 306.29 -10.10 -39.20 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -3.68 Total: 12.62 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.59 Total: 1.97 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.52 Total: -54.84 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.46 Total: -15.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.44 Total: -3.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.10 -10.10 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593479025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.547 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds