Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.68082 * 2 1 4 4 C 1.53291 * 109.68172 * 239.48028 * 2 1 3 5 5 H 1.08992 * 109.51757 * 307.91231 * 4 2 1 6 6 C 1.50704 * 109.51443 * 68.01826 * 4 2 1 7 7 C 1.38263 * 119.99688 * 84.97119 * 6 4 2 8 8 C 1.38213 * 120.02525 * 180.02562 * 7 6 4 9 9 C 1.38238 * 120.01521 * 359.68723 * 8 7 6 10 10 C 1.38331 * 119.98752 * 0.61416 * 9 8 7 11 11 Cl 1.73599 * 120.01840 * 179.67830 * 10 9 8 12 12 C 1.38195 * 119.98726 * 264.99806 * 6 4 2 13 13 O 1.42963 * 109.22417 * 187.93831 * 4 2 1 14 14 C 1.42958 * 114.16691 * 62.57685 * 13 4 2 15 15 C 1.53294 * 109.22692 * 297.42236 * 14 13 4 16 16 N 1.47148 * 109.71237 * 120.53465 * 2 1 3 17 17 C 1.36938 * 120.98206 * 350.25844 * 16 2 1 18 18 H 1.07996 * 120.00047 * 42.41501 * 17 16 2 19 19 C 1.38817 * 120.00123 * 222.42169 * 17 16 2 20 20 N 1.31613 * 120.00390 * 214.78844 * 19 17 16 21 21 Si 1.86802 * 119.99674 * 34.78563 * 19 17 16 22 22 H 1.48504 * 109.47288 * 84.59177 * 21 19 17 23 23 H 1.48506 * 109.47037 * 204.59201 * 21 19 17 24 24 H 1.48502 * 109.47303 * 324.58697 * 21 19 17 25 25 H 1.08996 * 109.47085 * 180.51624 * 1 2 3 26 26 H 1.08997 * 109.47204 * 300.52344 * 1 2 3 27 27 H 1.09004 * 109.47179 * 60.51934 * 1 2 3 28 28 H 1.07993 * 119.98542 * 0.02562 * 7 6 4 29 29 H 1.07999 * 119.99245 * 179.97438 * 8 7 6 30 30 H 1.08005 * 120.01192 * 180.29815 * 9 8 7 31 31 H 1.07992 * 120.00908 * 0.02562 * 12 6 4 32 32 H 1.09000 * 109.51724 * 177.49566 * 14 13 4 33 33 H 1.09002 * 109.55140 * 57.37440 * 14 13 4 34 34 H 1.08993 * 109.68098 * 292.57792 * 15 14 13 35 35 H 1.09002 * 109.71573 * 172.03748 * 15 14 13 36 36 H 0.96996 * 120.00434 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0463 -0.7330 -1.2434 5 1 1.5746 -1.7133 -1.3103 6 6 1.7152 0.0701 -2.4749 7 6 2.5591 1.0853 -2.8857 8 6 2.2558 1.8225 -4.0147 9 6 1.1117 1.5410 -4.7377 10 6 0.2636 0.5295 -4.3237 11 17 -1.1777 0.1808 -5.2263 12 6 0.5677 -0.2081 -3.1931 13 8 3.4637 -0.8900 -1.1426 14 6 3.8868 -1.6882 -0.0347 15 6 3.4648 -1.0042 1.2706 16 7 2.0263 -0.7038 1.1931 17 6 1.1748 -1.0681 2.2018 18 1 0.2091 -1.4907 1.9670 19 6 1.5529 -0.8942 3.5261 20 7 1.1727 -1.7631 4.4387 21 14 2.6013 0.5732 4.0130 22 1 1.7268 1.7503 4.2477 23 1 3.3492 0.2565 5.2563 24 1 3.5614 0.8794 2.9223 25 1 -0.3633 -1.0276 0.0093 26 1 -0.3633 0.5219 0.8852 27 1 -0.3634 0.5058 -0.8946 28 1 3.4557 1.3023 -2.3241 29 1 2.9152 2.6157 -4.3349 30 1 0.8772 2.1139 -5.6227 31 1 -0.0918 -1.0006 -2.8717 32 1 4.9714 -1.7947 -0.0558 33 1 3.4231 -2.6728 -0.0962 34 1 4.0267 -0.0790 1.3985 35 1 3.6561 -1.6692 2.1128 36 1 1.4372 -1.6417 5.3639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595768374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -1.281317 kcal Electronic energy + Delta-G solvation = -20224.007620 eV Core-core repulsion = 17120.753735 eV Total energy + Delta-G solvation = -3103.253885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84505 -38.26973 -36.45668 -34.89287 -33.17448 -31.66589 -30.73153 -29.95213 -27.55033 -26.07331 -23.77666 -22.65098 -21.98323 -21.31572 -19.60590 -17.20642 -16.66758 -16.02181 -15.65291 -15.17687 -14.95633 -14.57570 -14.22070 -14.07478 -13.73169 -13.61099 -13.35643 -12.69012 -12.39687 -12.04798 -11.89128 -11.51931 -11.44355 -11.34781 -11.24162 -10.90245 -10.74164 -10.67417 -10.54949 -10.27882 -9.91104 -9.62022 -9.27228 -8.87088 -8.66377 -8.32763 -6.75149 -6.16086 -3.49240 1.19302 1.25605 2.08588 3.35690 3.46426 3.52126 3.61725 4.12683 4.50285 4.71203 4.83057 4.93054 5.11751 5.24701 5.32818 5.40480 5.49741 5.62214 5.77381 5.83898 5.92891 5.97023 6.06878 6.09229 6.19619 6.22863 6.37940 6.44229 6.47270 6.63281 6.73937 6.81104 6.89306 7.00105 7.66093 7.93759 8.33596 8.88722 9.62447 10.11473 10.98966 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.004936 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.285859 B = 5670.977846 C = 6062.366900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.145 3.855 3 H 0.035 0.965 4 C 0.118 3.882 5 H 0.068 0.932 6 C -0.051 4.051 7 C -0.090 4.090 8 C -0.112 4.112 9 C -0.118 4.118 10 C -0.036 4.036 11 Cl -0.078 7.078 12 C -0.100 4.100 13 O -0.385 6.385 14 C 0.047 3.953 15 C 0.107 3.893 16 N -0.596 5.596 17 C -0.279 4.279 18 H 0.078 0.922 19 C 0.054 3.946 20 N -0.877 5.877 21 Si 0.844 3.156 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.260 1.260 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 4.519 -16.544 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.039 3.961 3 H 0.053 0.947 4 C 0.059 3.941 5 H 0.085 0.915 6 C -0.052 4.052 7 C -0.108 4.108 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.062 4.062 11 Cl -0.049 7.049 12 C -0.119 4.119 13 O -0.304 6.304 14 C -0.031 4.031 15 C -0.018 4.018 16 N -0.321 5.321 17 C -0.407 4.407 18 H 0.095 0.905 19 C -0.149 4.149 20 N -0.515 5.515 21 Si 0.670 3.330 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.185 1.185 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.458 4.484 -16.538 17.197 hybrid contribution 0.283 0.744 0.654 1.030 sum 1.741 5.228 -15.883 16.812 Atomic orbital electron populations 1.21769 0.94652 1.02045 1.00867 1.21159 0.94327 0.93955 0.86612 0.94717 1.21424 0.82813 0.97609 0.92251 0.91451 1.19686 0.93982 0.96194 0.95361 1.21163 0.99459 0.94150 0.96004 1.21104 0.96635 0.99870 0.95379 1.20992 0.94659 0.97244 1.00740 1.20785 0.90387 0.99499 0.95529 1.98357 1.37591 1.94638 1.74353 1.20851 0.97514 1.00027 0.93466 1.87767 1.21111 1.72788 1.48748 1.23138 0.98718 0.93837 0.87401 1.21989 0.85872 0.97999 0.95986 1.44403 1.03512 1.65596 1.18578 1.18545 1.01490 1.36961 0.83679 0.90482 1.25604 0.96776 0.96798 0.95739 1.70066 1.46478 1.32222 1.02713 0.87375 0.81039 0.86656 0.77899 1.21367 1.22288 1.18505 0.92381 0.91362 0.93768 0.84867 0.85256 0.85320 0.84830 0.89646 0.93175 0.94888 0.90539 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.80 37.16 0.29 -2.22 16 2 C 0.15 2.88 3.12 -67.43 -0.21 2.67 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.12 2.05 2.45 -27.73 -0.07 1.99 16 5 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 6 C -0.05 -0.77 4.53 -104.63 -0.47 -1.24 16 7 C -0.09 -1.23 9.35 -39.58 -0.37 -1.60 16 8 C -0.11 -1.27 10.05 -39.59 -0.40 -1.66 16 9 C -0.12 -1.32 9.83 -39.55 -0.39 -1.71 16 10 C -0.04 -0.44 6.32 -39.49 -0.25 -0.69 16 11 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 12 C -0.10 -1.37 8.24 -39.54 -0.33 -1.69 16 13 O -0.38 -6.90 9.53 -35.23 -0.34 -7.24 16 14 C 0.05 0.83 6.98 37.31 0.26 1.09 16 15 C 0.11 2.26 4.86 -3.53 -0.02 2.24 16 16 N -0.60 -13.73 2.49 -164.30 -0.41 -14.14 16 17 C -0.28 -7.41 8.46 -15.06 -0.13 -7.54 16 18 H 0.08 2.19 6.92 -52.49 -0.36 1.82 16 19 C 0.05 1.50 4.88 -17.43 -0.09 1.41 16 20 N -0.88 -25.59 13.97 55.49 0.78 -24.82 16 21 Si 0.84 20.99 27.55 -169.99 -4.68 16.30 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.26 -6.25 5.24 56.52 0.30 -5.96 16 25 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16 26 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 27 H 0.04 0.70 6.65 -51.93 -0.35 0.36 16 28 H 0.13 1.84 7.62 -52.49 -0.40 1.44 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.71 6.57 -51.93 -0.34 0.37 16 35 H 0.08 1.70 7.34 -51.93 -0.38 1.32 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -28.85 304.06 -8.55 -37.40 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.82 Total: -0.74 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.16 Total: -8.96 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.37 Total: -38.96 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.34 Total: -7.24 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.68 Total: 16.30 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.85 -8.55 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595768374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.123 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds