Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35922 * 117.00014 * 2 1 4 4 C 1.38711 * 120.05925 * 0.24575 * 3 2 1 5 5 C 1.38148 * 119.95720 * 180.25345 * 4 3 2 6 6 C 1.50702 * 119.96413 * 179.77012 * 5 4 3 7 7 N 1.46902 * 109.47215 * 269.72959 * 6 5 4 8 8 C 1.47961 * 111.00005 * 169.99576 * 7 6 5 9 9 C 1.53934 * 86.17939 * 137.58072 * 8 7 6 10 10 C 1.50703 * 113.73399 * 221.81705 * 9 8 7 11 11 H 1.07999 * 119.99920 * 358.09577 * 10 9 8 12 12 C 1.37877 * 119.99669 * 178.10223 * 10 9 8 13 13 N 1.31510 * 120.00506 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99624 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47263 * 89.99888 * 14 12 10 16 16 H 1.48497 * 109.47123 * 209.99934 * 14 12 10 17 17 H 1.48502 * 109.47383 * 330.00011 * 14 12 10 18 18 C 1.48296 * 111.00409 * 269.34877 * 7 6 5 19 19 C 1.38282 * 120.07893 * 359.50033 * 5 4 3 20 20 C 1.38244 * 120.11442 * 0.24899 * 19 5 4 21 21 C 1.38261 * 120.04890 * 0.02562 * 20 19 5 22 22 Cl 1.73596 * 120.04081 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.46677 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47333 * 300.00409 * 1 2 3 25 25 H 1.09000 * 109.46850 * 60.00424 * 1 2 3 26 26 H 1.08001 * 120.01935 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47251 * 149.72535 * 6 5 4 28 28 H 1.09004 * 109.46551 * 29.72901 * 6 5 4 29 29 H 1.09007 * 113.75652 * 23.26342 * 8 7 6 30 30 H 1.08993 * 113.76177 * 251.90248 * 8 7 6 31 31 H 1.09002 * 113.73279 * 90.64057 * 9 8 7 32 32 H 0.96995 * 120.00309 * 180.02562 * 13 12 10 33 33 H 1.09001 * 113.86054 * 108.14174 * 18 7 6 34 34 H 1.09000 * 113.76062 * 336.68481 * 18 7 6 35 35 H 1.07992 * 119.94264 * 180.23355 * 19 5 4 36 36 H 1.08007 * 119.97596 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 0.0051 5 6 1.9212 3.6050 -0.0002 6 6 1.1018 4.8698 0.0002 7 7 0.8356 5.2812 -1.3847 8 6 -0.1592 6.3755 -1.4308 9 6 0.7463 7.0150 -2.4988 10 6 0.9119 8.5045 -2.3409 11 1 0.3908 9.0250 -1.5509 12 6 1.7284 9.2028 -3.2050 13 7 2.3623 8.5692 -4.1673 14 14 1.9330 11.0493 -3.0096 15 1 3.0743 11.3276 -2.1012 16 1 2.1961 11.6614 -4.3368 17 1 0.6912 11.6270 -2.4355 18 6 1.8930 6.1951 -1.8803 19 6 3.3021 3.6768 -0.0002 20 6 4.0569 2.5186 0.0000 21 6 3.4323 1.2852 -0.0005 22 17 4.3803 -0.1691 0.0003 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2132 2.3201 0.0096 27 1 1.6512 5.6585 0.5143 28 1 0.1573 4.6906 0.5140 29 1 -0.2225 6.9507 -0.5070 30 1 -1.1339 6.0673 -1.8088 31 1 0.4972 6.7210 -3.5185 32 1 2.9370 9.0604 -4.7750 33 1 2.5568 5.7429 -2.6173 34 1 2.4287 6.7177 -1.0878 35 1 3.7918 4.6393 -0.0005 36 1 5.1354 2.5773 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600180958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = -4.937315 kcal Electronic energy + Delta-G solvation = -19223.363594 eV Core-core repulsion = 16119.951173 eV Total energy + Delta-G solvation = -3103.412421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.33384 -40.32894 -38.49523 -37.39733 -34.81501 -33.27100 -31.24915 -30.11306 -28.28581 -27.18045 -26.65254 -24.41486 -23.32118 -22.19194 -20.41183 -19.02412 -18.44781 -17.54910 -17.22347 -16.81769 -16.66258 -16.32998 -15.74581 -15.58737 -15.03567 -14.85531 -14.33964 -14.20708 -13.83158 -13.52695 -13.20716 -13.03967 -12.83626 -12.80767 -12.51762 -12.37708 -12.24961 -12.03399 -11.90658 -11.78840 -11.52690 -11.12541 -10.91898 -10.51280 -9.80616 -9.59729 -9.16668 -8.13487 -6.25136 0.09325 0.31971 1.17418 1.43159 1.44698 1.54510 2.25607 2.43014 2.54225 3.16468 3.34359 3.65398 3.77006 4.05199 4.21248 4.22819 4.30908 4.40028 4.43757 4.46616 4.52582 4.62198 4.74273 4.77295 4.80488 4.88338 4.99308 5.04810 5.16621 5.27584 5.40945 5.61598 5.64994 5.65798 5.86900 6.26721 6.30921 6.36852 6.84287 7.43745 8.95787 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.003613 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.842635 B = 7748.144018 C = 8344.890171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.322 6.322 3 C 0.129 3.871 4 C -0.182 4.182 5 C -0.028 4.028 6 C 0.056 3.944 7 N -0.484 5.484 8 C 0.014 3.986 9 C 0.017 3.983 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.016 3.984 13 N -0.922 5.922 14 Si 0.955 3.045 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.029 3.971 19 C -0.146 4.146 20 C -0.072 4.072 21 C -0.088 4.088 22 Cl -0.063 7.063 23 H 0.123 0.877 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.151 0.849 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.132 0.868 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -14.737 11.214 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.082 3.918 4 C -0.201 4.201 5 C -0.029 4.029 6 C -0.072 4.072 7 N -0.206 5.206 8 C -0.114 4.114 9 C -0.002 4.002 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.184 4.184 13 N -0.560 5.560 14 Si 0.780 3.220 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.100 4.100 19 C -0.165 4.165 20 C -0.090 4.090 21 C -0.116 4.116 22 Cl -0.035 7.035 23 H 0.142 0.858 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.169 0.831 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.133 -15.668 10.749 19.035 hybrid contribution 0.442 1.670 0.134 1.733 sum -0.692 -13.998 10.883 17.744 Atomic orbital electron populations 1.23388 0.76176 1.05785 1.02335 1.86113 1.23568 1.25506 1.88313 1.18753 0.90603 0.85555 0.96887 1.21178 1.01003 0.90427 1.07513 1.19752 0.93812 0.94487 0.94810 1.21670 0.99662 0.93923 0.91968 1.68535 1.06519 1.27959 1.17595 1.23954 0.96685 0.91373 0.99383 1.20304 0.92311 0.93797 0.93792 1.21445 1.27596 0.93469 1.14526 0.92132 1.25795 0.95348 1.02650 0.94558 1.70091 1.30290 1.37560 1.18088 0.85606 0.78743 0.80277 0.77341 1.20019 1.21198 1.18941 1.23866 0.95416 0.92646 0.98054 1.21099 0.93424 0.98658 1.03333 1.21048 1.01357 0.89214 0.97424 1.20313 0.89036 0.88899 1.13328 1.98335 1.71554 1.36315 1.97250 0.85844 0.91329 0.92172 0.83096 0.92809 0.88674 0.91405 0.90077 0.95939 0.92932 0.93586 0.92795 0.84989 0.82715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -7.69 9.96 -92.67 -0.92 -8.61 16 3 C 0.13 3.41 6.68 22.52 0.15 3.56 16 4 C -0.18 -4.72 8.69 22.36 0.19 -4.53 16 5 C -0.03 -0.80 5.44 -19.87 -0.11 -0.90 16 6 C 0.06 1.67 4.92 85.56 0.42 2.09 16 7 N -0.48 -18.22 6.15 -911.59 -5.61 -23.83 16 8 C 0.01 0.56 7.50 86.41 0.65 1.21 16 9 C 0.02 0.84 3.60 -10.89 -0.04 0.80 16 10 C -0.53 -28.31 8.77 25.60 0.22 -28.09 16 11 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 12 C 0.02 0.86 5.46 84.66 0.46 1.32 16 13 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 14 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C 0.03 1.31 7.53 86.34 0.65 1.96 16 19 C -0.15 -4.08 9.70 22.28 0.22 -3.87 16 20 C -0.07 -1.84 9.83 22.28 0.22 -1.63 16 21 C -0.09 -2.37 6.33 22.41 0.14 -2.23 16 22 Cl -0.06 -1.57 28.50 -2.72 -0.08 -1.64 16 23 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 25 H 0.06 0.93 7.67 -2.39 -0.02 0.91 16 26 H 0.15 3.29 6.30 -2.91 -0.02 3.28 16 27 H 0.05 1.63 7.33 -2.39 -0.02 1.61 16 28 H 0.09 2.43 8.02 -2.39 -0.02 2.41 16 29 H 0.07 2.48 7.88 -2.38 -0.02 2.46 16 30 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 2.40 7.43 -2.39 -0.02 2.38 16 35 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 36 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -61.32 320.10 1.07 -60.25 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.07 Total: 11.41 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 4.29 Total: -28.91 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -5.32 Total: -76.88 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.92 Total: -8.61 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.64 kcal Total: -61.32 1.07 -60.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600180958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.312 kcal (2) G-P(sol) polarization free energy of solvation -61.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds