Wall clock time and date at job start Tue Mar 31 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47494 * 2 1 4 4 N 1.46900 * 109.47100 * 239.99540 * 2 1 3 5 5 C 1.46900 * 110.99629 * 85.00381 * 4 2 1 6 6 C 1.50699 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.31160 * 120.00250 * 125.00069 * 6 5 4 8 8 Cl 1.73600 * 120.00536 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46952 * 120.00250 * 2 1 3 10 10 C 1.38305 * 119.93398 * 79.72108 * 9 2 1 11 11 C 1.38095 * 120.06746 * 179.72579 * 10 9 2 12 12 C 1.38879 * 119.93531 * 0.54974 * 11 10 9 13 13 O 1.35743 * 120.07267 * 179.74886 * 12 11 10 14 14 C 1.34830 * 117.00206 * 174.44202 * 13 12 11 15 15 H 1.08002 * 120.00080 * 5.05400 * 14 13 12 16 16 C 1.38648 * 120.00210 * 185.05407 * 14 13 12 17 17 N 1.31555 * 120.00116 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47122 * 59.99942 * 18 16 14 20 20 H 1.48502 * 109.47078 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47074 * 300.00287 * 18 16 14 22 22 C 1.38880 * 119.85848 * 359.72593 * 12 11 10 23 23 C 1.38098 * 119.93174 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.47010 * 300.00277 * 1 2 3 25 25 H 1.09007 * 109.46841 * 59.99881 * 1 2 3 26 26 H 1.08996 * 109.47494 * 179.97438 * 1 2 3 27 27 H 1.00900 * 111.00043 * 321.05133 * 4 2 1 28 28 H 1.09000 * 109.47274 * 299.99782 * 5 4 2 29 29 H 1.09005 * 109.47227 * 60.00374 * 5 4 2 30 30 H 1.08001 * 120.00389 * 305.00295 * 6 5 4 31 31 H 1.08008 * 120.00153 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.96476 * 0.02562 * 10 9 2 33 33 H 1.08004 * 120.03370 * 180.28076 * 11 10 9 34 34 H 0.97000 * 120.00134 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.03613 * 179.97438 * 22 12 11 36 36 H 1.08003 * 119.96943 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5885 -0.5216 -3.5556 7 6 1.8872 -0.5262 -4.6640 8 17 2.4698 -1.3840 -6.0563 9 6 2.0323 -0.7105 1.2304 10 6 2.0607 -2.0928 1.2660 11 6 2.5257 -2.7466 2.3899 12 6 2.9545 -2.0149 3.4897 13 8 3.4074 -2.6548 4.5978 14 6 3.9152 -1.8874 5.5833 15 1 3.8737 -0.8110 5.5053 16 6 4.4907 -2.4800 6.6968 17 7 4.5417 -3.7911 6.7917 18 14 5.1936 -1.4168 8.0625 19 1 4.1190 -0.5611 8.6266 20 1 5.7462 -2.2862 9.1321 21 1 6.2739 -0.5577 7.5147 22 6 2.9194 -0.6270 3.4531 23 6 2.4581 0.0211 2.3242 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.4495 -1.4980 -1.4100 28 1 1.0871 0.6162 -2.5525 29 1 2.7590 1.0461 -2.1182 30 1 3.5287 -1.0512 -3.5094 31 1 0.9468 0.0029 -4.7103 32 1 1.7234 -2.6613 0.4120 33 1 2.5519 -3.8260 2.4153 34 1 4.9440 -4.2058 7.5709 35 1 3.2517 -0.0551 4.3068 36 1 2.4309 1.1004 2.2949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775336976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:25 Heat of formation + Delta-G solvation = 3.882691 kcal Electronic energy + Delta-G solvation = -18541.663449 eV Core-core repulsion = 15438.633492 eV Total energy + Delta-G solvation = -3103.029957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.21149 -37.85023 -36.96305 -35.93112 -33.66689 -32.20722 -30.28477 -29.88883 -27.90377 -25.41190 -25.04785 -22.58763 -21.79457 -20.53057 -19.94289 -17.90704 -17.03147 -16.67648 -15.39692 -15.15502 -14.66055 -14.50870 -14.16622 -14.07853 -13.56163 -13.45043 -13.14133 -12.87698 -12.68847 -12.49989 -12.31280 -12.00090 -11.89573 -11.65456 -11.37442 -11.15166 -11.09256 -10.68410 -10.63013 -10.46185 -10.40453 -9.40230 -9.30063 -8.80038 -8.47482 -8.12270 -7.12033 -6.42209 -4.01120 1.56868 2.03015 2.26956 2.36618 3.14250 3.15551 3.18260 3.98809 4.17018 4.57099 4.64750 4.81781 5.01809 5.09821 5.15294 5.27564 5.34772 5.39542 5.41485 5.66228 5.75477 5.79529 5.92151 5.95485 6.03516 6.11815 6.25933 6.45056 6.74381 6.83452 6.99366 7.10190 7.30408 7.32580 7.44568 7.48489 7.86995 8.02864 9.03452 9.74618 10.75936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033542 B = 0.002681 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.567757 B =10442.022131 C =10744.009588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.142 3.858 3 H 0.077 0.923 4 N -0.676 5.676 5 C 0.091 3.909 6 C -0.128 4.128 7 C -0.113 4.113 8 Cl -0.097 7.097 9 C -0.169 4.169 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.153 3.847 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.233 4.233 23 C -0.067 4.067 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.342 0.658 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 8.431 -18.127 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 H 0.095 0.905 4 N -0.306 5.306 5 C -0.039 4.039 6 C -0.147 4.147 7 C -0.158 4.158 8 Cl -0.069 7.069 9 C -0.170 4.170 10 C -0.072 4.072 11 C -0.213 4.213 12 C 0.100 3.900 13 O -0.083 6.083 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.253 4.253 23 C -0.086 4.086 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.759 8.025 -17.838 20.390 hybrid contribution -0.517 0.621 0.403 0.903 sum -6.276 8.647 -17.435 20.448 Atomic orbital electron populations 1.22505 0.97168 1.02270 1.01604 1.20203 0.91868 0.96746 0.87923 0.90509 1.60577 1.58188 1.09262 1.02609 1.20977 0.99265 0.95206 0.88405 1.23260 1.00221 0.98111 0.93116 1.24416 1.01026 1.01594 0.88808 1.98371 1.88770 1.76326 1.43455 1.19032 1.09441 0.93544 0.94980 1.20305 0.97583 0.93377 0.95886 1.20208 1.08810 0.99344 0.92982 1.19391 0.92101 0.90928 0.87592 1.83977 1.67426 1.35030 1.21856 1.21263 1.38031 0.90651 0.96838 0.89187 1.25275 0.96778 0.96301 0.98176 1.70028 1.41740 1.08723 1.29424 0.85796 0.79273 0.78922 0.79515 1.19557 1.20304 1.19520 1.21103 1.09705 0.94414 1.00046 1.20531 0.97251 0.98051 0.92788 0.91689 0.93457 0.92268 0.83938 0.94664 0.89379 0.85304 0.83952 0.87387 0.86708 0.92014 0.85685 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.14 37.16 0.34 -1.53 16 2 C 0.14 1.73 2.79 -68.87 -0.19 1.54 16 3 H 0.08 0.90 7.66 -51.93 -0.40 0.51 16 4 N -0.68 -7.48 5.70 -109.22 -0.62 -8.10 16 5 C 0.09 0.79 5.92 -4.98 -0.03 0.76 16 6 C -0.13 -1.08 9.50 -36.07 -0.34 -1.42 16 7 C -0.11 -0.87 10.43 28.97 0.30 -0.57 16 8 Cl -0.10 -0.86 29.10 -51.86 -1.51 -2.37 16 9 C -0.17 -2.76 4.96 -104.57 -0.52 -3.28 16 10 C -0.05 -0.93 9.31 -39.61 -0.37 -1.30 16 11 C -0.19 -4.11 9.99 -39.40 -0.39 -4.51 16 12 C 0.15 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.18 -5.16 9.76 0.07 0.00 -5.16 16 14 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 18 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 23 C -0.07 -1.21 9.66 -39.61 -0.38 -1.59 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.42 7.45 -51.92 -0.39 0.03 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.34 3.55 7.81 -39.29 -0.31 3.24 16 28 H 0.04 0.26 7.09 -51.93 -0.37 -0.10 16 29 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 0.86 7.85 -52.48 -0.41 0.44 16 32 H 0.11 1.61 7.25 -52.49 -0.38 1.23 16 33 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 36 H 0.10 1.57 8.03 -52.48 -0.42 1.15 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -30.16 324.33 -8.00 -38.16 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.49 Total: 5.35 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -2.01 Total: -23.58 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.14 Total: -32.86 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.51 Total: -2.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.16 -8.00 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.044 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds