Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47311 * 2 1 4 4 N 1.46903 * 109.47730 * 119.99995 * 2 1 3 5 5 C 1.46900 * 111.00354 * 275.00505 * 4 2 1 6 6 C 1.50695 * 109.47151 * 179.97438 * 5 4 2 7 7 C 1.31157 * 119.99745 * 124.99619 * 6 5 4 8 8 Cl 1.73593 * 120.00267 * 0.02562 * 7 6 5 9 9 C 1.50698 * 109.47368 * 240.00624 * 2 1 3 10 10 C 1.38309 * 119.92859 * 279.72622 * 9 2 1 11 11 C 1.38096 * 120.06900 * 179.72030 * 10 9 2 12 12 C 1.38885 * 119.92915 * 0.54887 * 11 10 9 13 13 O 1.35746 * 120.06910 * 179.74410 * 12 11 10 14 14 C 1.34824 * 117.00175 * 174.43829 * 13 12 11 15 15 H 1.08000 * 120.00068 * 5.06669 * 14 13 12 16 16 C 1.38661 * 120.00222 * 185.05637 * 14 13 12 17 17 N 1.31554 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47127 * 59.99875 * 18 16 14 20 20 H 1.48500 * 109.47361 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47130 * 300.00215 * 18 16 14 22 22 C 1.38879 * 119.86316 * 359.72686 * 12 11 10 23 23 C 1.38103 * 119.92727 * 359.97438 * 22 12 11 24 24 H 1.09000 * 109.47538 * 59.99448 * 1 2 3 25 25 H 1.09007 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47409 * 299.99362 * 1 2 3 27 27 H 1.00904 * 110.99092 * 38.95382 * 4 2 1 28 28 H 1.09001 * 109.47175 * 59.99430 * 5 4 2 29 29 H 1.09002 * 109.46914 * 299.99591 * 5 4 2 30 30 H 1.07997 * 120.00133 * 305.00165 * 6 5 4 31 31 H 1.08011 * 119.99574 * 179.72510 * 7 6 5 32 32 H 1.08004 * 119.96334 * 359.97438 * 10 9 2 33 33 H 1.07994 * 120.03583 * 180.26749 * 11 10 9 34 34 H 0.97008 * 119.99743 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03351 * 179.97438 * 22 12 11 36 36 H 1.08002 * 119.95779 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5875 -0.5219 3.5559 7 6 3.6336 -0.0771 4.2102 8 17 4.4361 1.3694 3.6838 9 6 2.0323 -0.7103 -1.2305 10 6 2.0714 -2.0924 -1.2618 11 6 2.5258 -2.7464 -2.3901 12 6 2.9545 -2.0145 -3.4898 13 8 3.4066 -2.6543 -4.5983 14 6 3.6983 -1.8900 -5.6701 15 1 3.6472 -0.8138 -5.5958 16 6 4.0640 -2.4857 -6.8676 17 7 4.1260 -3.7967 -6.9581 18 14 4.4688 -1.4268 -8.3522 19 1 5.6139 -0.5383 -8.0290 20 1 4.8268 -2.2989 -9.4996 21 1 3.2869 -0.6012 -8.7084 22 6 2.9194 -0.6266 -3.4531 23 6 2.4580 0.0213 -2.3241 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.4496 -1.4979 1.4099 28 1 1.0871 0.6162 2.5526 29 1 2.7589 1.0462 2.1183 30 1 2.0881 -1.4217 3.8836 31 1 3.9929 -0.6083 5.0793 32 1 1.7424 -2.6610 -0.4045 33 1 2.5521 -3.8257 -2.4155 34 1 4.3815 -4.2135 -7.7960 35 1 3.2525 -0.0547 -4.3065 36 1 2.4301 1.1006 -2.2952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775336978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = 6.951031 kcal Electronic energy + Delta-G solvation = -18733.512919 eV Core-core repulsion = 15630.616016 eV Total energy + Delta-G solvation = -3102.896904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17571 -37.83968 -36.93250 -35.75790 -33.54716 -32.18738 -30.26841 -29.87865 -27.86494 -25.39985 -25.06455 -22.54176 -21.75601 -20.49886 -19.78948 -17.88331 -16.94561 -16.42742 -15.79375 -15.20982 -14.68527 -14.49767 -14.16258 -13.72840 -13.59915 -13.46668 -13.00248 -12.72190 -12.60885 -12.46333 -12.20433 -12.12836 -11.89521 -11.64011 -11.35165 -11.13322 -10.74516 -10.62467 -10.58604 -10.40800 -10.37153 -9.40049 -9.27669 -8.77689 -8.34381 -8.09025 -7.09002 -6.40465 -3.99185 1.64505 2.16055 2.29920 2.39935 3.15816 3.16763 3.19477 4.00534 4.21838 4.57088 4.68863 4.95315 5.08016 5.16842 5.21788 5.28048 5.36351 5.42258 5.53589 5.70846 5.80162 5.87770 5.89958 5.98291 6.10098 6.16322 6.28753 6.48197 6.77442 6.88321 7.03569 7.12836 7.35328 7.38276 7.48187 7.51296 7.90002 8.04856 9.05332 9.76923 10.77782 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.003099 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.045336 B = 9032.848114 C = 9328.634736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.141 3.859 3 H 0.076 0.924 4 N -0.672 5.672 5 C 0.071 3.929 6 C -0.133 4.133 7 C -0.105 4.105 8 Cl -0.092 7.092 9 C -0.167 4.167 10 C -0.053 4.053 11 C -0.195 4.195 12 C 0.153 3.847 13 O -0.180 6.180 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.233 4.233 23 C -0.068 4.068 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.338 0.662 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 8.032 18.920 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.094 0.906 4 N -0.303 5.303 5 C -0.057 4.057 6 C -0.153 4.153 7 C -0.150 4.150 8 Cl -0.064 7.064 9 C -0.168 4.168 10 C -0.071 4.071 11 C -0.214 4.214 12 C 0.100 3.900 13 O -0.084 6.084 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.252 4.252 23 C -0.086 4.086 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.156 0.844 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.240 7.822 18.471 20.503 hybrid contribution -0.673 0.651 -0.533 1.077 sum -4.913 8.473 17.939 20.439 Atomic orbital electron populations 1.22500 0.97214 1.02196 1.01596 1.20198 0.91806 0.96798 0.88005 0.90601 1.60672 1.57823 1.09125 1.02655 1.21279 0.99932 0.95849 0.88663 1.23102 0.96326 0.99705 0.96122 1.24416 0.96742 0.91672 1.02210 1.98359 1.79759 1.38171 1.90153 1.19046 1.09237 0.93548 0.94958 1.20298 0.97726 0.93374 0.95741 1.20205 1.08464 0.99287 0.93443 1.19388 0.91255 0.90923 0.88438 1.83974 1.70973 1.35258 1.18160 1.21269 1.47363 0.90715 0.87435 0.89197 1.25270 0.96870 0.96274 0.98104 1.70032 1.44408 1.08653 1.26895 0.85799 0.79164 0.78920 0.79647 1.19521 1.20316 1.19554 1.21103 1.09729 0.94402 1.00007 1.20537 0.97250 0.98077 0.92779 0.91745 0.92307 0.93433 0.84357 0.94100 0.89207 0.84926 0.83589 0.87393 0.86740 0.92045 0.85702 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.14 37.15 0.34 -1.63 16 2 C 0.14 1.84 2.79 -68.87 -0.19 1.65 16 3 H 0.08 0.99 7.66 -51.92 -0.40 0.59 16 4 N -0.67 -7.93 5.68 -109.22 -0.62 -8.55 16 5 C 0.07 0.71 5.78 -4.98 -0.03 0.68 16 6 C -0.13 -1.11 9.78 -36.07 -0.35 -1.47 16 7 C -0.11 -0.88 10.82 28.97 0.31 -0.56 16 8 Cl -0.09 -0.93 26.96 -51.86 -1.40 -2.33 16 9 C -0.17 -2.82 4.96 -104.58 -0.52 -3.34 16 10 C -0.05 -0.95 9.32 -39.61 -0.37 -1.31 16 11 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 12 C 0.15 3.78 6.65 -39.10 -0.26 3.52 16 13 O -0.18 -5.23 9.76 0.08 0.00 -5.23 16 14 C -0.39 -11.12 9.49 30.89 0.29 -10.82 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 18 Si 0.94 20.78 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.23 -5.15 9.17 -39.39 -0.36 -5.52 16 23 C -0.07 -1.26 9.66 -39.61 -0.38 -1.64 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.66 8.13 -51.92 -0.42 0.23 16 26 H 0.05 0.45 7.45 -51.93 -0.39 0.06 16 27 H 0.34 3.53 7.80 -39.29 -0.31 3.22 16 28 H 0.04 0.37 7.44 -51.93 -0.39 -0.02 16 29 H 0.09 1.00 5.92 -51.93 -0.31 0.69 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.11 1.63 7.23 -52.48 -0.38 1.25 16 33 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 36 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -30.99 321.12 -7.86 -38.84 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.40 Total: 5.66 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -2.01 Total: -24.05 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.14 Total: -33.48 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.40 Total: -2.33 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.99 -7.86 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.796 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds