Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46875 * 2 1 4 4 N 1.46903 * 109.47198 * 240.00632 * 2 1 3 5 5 C 1.46895 * 111.00017 * 84.99789 * 4 2 1 6 6 C 1.50699 * 109.47155 * 180.02562 * 5 4 2 7 7 C 1.31158 * 119.99944 * 124.99783 * 6 5 4 8 8 Cl 1.73604 * 120.00277 * 359.72761 * 7 6 5 9 9 C 1.50695 * 109.47280 * 120.00324 * 2 1 3 10 10 C 1.38297 * 119.93016 * 79.72638 * 9 2 1 11 11 C 1.38103 * 120.06841 * 179.72259 * 10 9 2 12 12 C 1.38881 * 119.92806 * 0.55493 * 11 10 9 13 13 O 1.35754 * 120.06761 * 179.74521 * 12 11 10 14 14 C 1.34831 * 117.00163 * 174.43676 * 13 12 11 15 15 H 1.08007 * 119.99444 * 5.05731 * 14 13 12 16 16 C 1.38651 * 120.00268 * 185.05658 * 14 13 12 17 17 N 1.31552 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47170 * 60.00066 * 18 16 14 20 20 H 1.48503 * 109.47338 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47081 * 299.99890 * 18 16 14 22 22 C 1.38876 * 119.86490 * 359.71933 * 12 11 10 23 23 C 1.38098 * 119.92927 * 0.02562 * 22 12 11 24 24 H 1.08994 * 109.46785 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46665 * 299.99818 * 1 2 3 26 26 H 1.08996 * 109.46996 * 59.99811 * 1 2 3 27 27 H 1.00896 * 110.99546 * 321.04355 * 4 2 1 28 28 H 1.09000 * 109.47647 * 59.99870 * 5 4 2 29 29 H 1.09003 * 109.47277 * 299.99746 * 5 4 2 30 30 H 1.08002 * 120.00248 * 305.00538 * 6 5 4 31 31 H 1.08001 * 119.99889 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.96711 * 0.02562 * 10 9 2 33 33 H 1.08001 * 120.03828 * 180.26963 * 11 10 9 34 34 H 0.97006 * 119.99881 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.03506 * 179.97438 * 22 12 11 36 36 H 1.08004 * 119.96843 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3468 6 6 2.5874 -0.5215 -3.5561 7 6 1.8854 -0.5255 -4.6640 8 17 0.3712 0.3206 -4.7353 9 6 2.0324 -0.7104 1.2304 10 6 2.0609 -2.0927 1.2657 11 6 2.5261 -2.7466 2.3897 12 6 2.9548 -2.0148 3.4894 13 8 3.4077 -2.6548 4.5977 14 6 3.9155 -1.8875 5.5831 15 1 3.8739 -0.8110 5.5051 16 6 4.4911 -2.4802 6.6966 17 7 4.5413 -3.7913 6.7918 18 14 5.1940 -1.4170 8.0622 19 1 4.1193 -0.5614 8.6264 20 1 5.7467 -2.2863 9.1318 21 1 6.2743 -0.5578 7.5144 22 6 2.9196 -0.6270 3.4530 23 6 2.4583 0.0211 2.3242 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.4497 -1.4978 -1.4101 28 1 2.7588 1.0464 -2.1182 29 1 1.0871 0.6165 -2.5525 30 1 3.5272 -1.0516 -3.5104 31 1 2.2470 -1.0593 -5.5304 32 1 1.7236 -2.6612 0.4117 33 1 2.5522 -3.8260 2.4151 34 1 4.9437 -4.2060 7.5710 35 1 3.2519 -0.0552 4.3068 36 1 2.4310 1.1004 2.2950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775336979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = 6.455018 kcal Electronic energy + Delta-G solvation = -18703.890888 eV Core-core repulsion = 15600.972475 eV Total energy + Delta-G solvation = -3102.918412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18435 -37.87305 -37.00120 -35.77638 -33.57210 -32.19444 -30.26868 -29.88355 -27.86262 -25.40103 -25.09243 -22.54753 -21.77425 -20.36213 -19.85831 -17.89043 -17.02000 -16.76281 -15.46943 -15.09298 -14.60363 -14.47295 -14.13600 -14.06883 -13.53783 -13.41136 -13.11923 -12.80665 -12.67043 -12.45974 -12.23454 -12.06772 -11.78305 -11.63089 -11.34120 -11.14139 -10.98269 -10.66462 -10.58964 -10.40173 -10.38991 -9.41532 -9.28510 -8.78665 -8.35672 -8.10165 -7.09974 -6.41135 -3.99951 1.57972 2.05870 2.28759 2.38864 3.15035 3.16244 3.18910 3.99814 4.17640 4.56676 4.67538 4.98212 5.08823 5.13047 5.28603 5.35692 5.39872 5.46385 5.51690 5.70275 5.79722 5.83924 5.90005 5.98788 6.03466 6.18201 6.27984 6.47426 6.76546 6.88080 7.03123 7.11931 7.34360 7.38147 7.47280 7.50418 7.88973 8.04101 9.04639 9.76060 10.77098 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.045720 B = 0.002785 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.277446 B =10049.748102 C =10174.839869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.076 0.924 4 N -0.675 5.675 5 C 0.070 3.930 6 C -0.127 4.127 7 C -0.116 4.116 8 Cl -0.098 7.098 9 C -0.167 4.167 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.153 3.847 13 O -0.180 6.180 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.233 4.233 23 C -0.068 4.068 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.340 0.660 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 7.854 -18.763 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 H 0.094 0.906 4 N -0.305 5.305 5 C -0.058 4.058 6 C -0.146 4.146 7 C -0.161 4.161 8 Cl -0.071 7.071 9 C -0.168 4.168 10 C -0.072 4.072 11 C -0.214 4.214 12 C 0.100 3.900 13 O -0.084 6.084 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.252 4.252 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.280 7.594 -18.362 20.559 hybrid contribution -0.561 0.673 0.456 0.988 sum -5.841 8.266 -17.906 20.569 Atomic orbital electron populations 1.22494 0.97181 1.02222 1.01606 1.20192 0.91892 0.96699 0.87958 0.90619 1.60590 1.57963 1.09268 1.02673 1.21251 1.00424 0.95389 0.88781 1.23278 0.99662 0.98061 0.93627 1.24552 0.88766 1.01736 1.01032 1.98352 1.33230 1.77160 1.98314 1.19053 1.09192 0.93544 0.95002 1.20305 0.97601 0.93389 0.95886 1.20208 1.08846 0.99314 0.92990 1.19387 0.92133 0.90920 0.87591 1.83979 1.67507 1.35012 1.21868 1.21265 1.37995 0.90653 0.96852 0.89200 1.25268 0.96799 0.96295 0.98164 1.70030 1.41810 1.08716 1.29425 0.85800 0.79275 0.78926 0.79529 1.19559 1.20312 1.19526 1.21102 1.09695 0.94415 1.00029 1.20539 0.97278 0.98071 0.92796 0.92335 0.91800 0.93344 0.84139 0.89786 0.93321 0.84105 0.83465 0.87396 0.86732 0.92037 0.85701 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.14 37.16 0.34 -1.70 16 2 C 0.14 1.84 2.79 -68.86 -0.19 1.65 16 3 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 4 N -0.67 -7.91 5.70 -109.22 -0.62 -8.53 16 5 C 0.07 0.69 5.78 -4.98 -0.03 0.66 16 6 C -0.13 -1.05 9.78 -36.07 -0.35 -1.40 16 7 C -0.12 -0.87 10.82 28.97 0.31 -0.55 16 8 Cl -0.10 -0.86 26.96 -51.86 -1.40 -2.26 16 9 C -0.17 -2.80 4.96 -104.58 -0.52 -3.31 16 10 C -0.05 -0.95 9.31 -39.61 -0.37 -1.32 16 11 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 12 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 13 O -0.18 -5.20 9.76 0.03 0.00 -5.20 16 14 C -0.39 -11.05 9.49 30.88 0.29 -10.76 16 15 H 0.09 2.35 5.20 -52.48 -0.27 2.07 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 18 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 23 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 24 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 27 H 0.34 3.77 7.81 -39.29 -0.31 3.47 16 28 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 29 H 0.05 0.47 5.30 -51.93 -0.27 0.20 16 30 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.11 1.63 7.25 -52.49 -0.38 1.25 16 33 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 36 H 0.10 1.62 8.03 -52.48 -0.42 1.20 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -30.38 321.14 -7.86 -38.24 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.40 Total: 6.01 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -2.01 Total: -23.91 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.14 Total: -33.38 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.40 Total: -2.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.38 -7.86 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.694 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds