Wall clock time and date at job start Tue Mar 31 2020 05:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46875 * 2 1 4 4 N 1.46903 * 109.47198 * 240.00632 * 2 1 3 5 5 C 1.46895 * 111.00017 * 84.99789 * 4 2 1 6 6 C 1.50699 * 109.47155 * 180.02562 * 5 4 2 7 7 C 1.31158 * 119.99944 * 124.99783 * 6 5 4 8 8 Cl 1.73604 * 120.00277 * 359.72761 * 7 6 5 9 9 C 1.50695 * 109.47280 * 120.00324 * 2 1 3 10 10 C 1.38297 * 119.93016 * 79.72638 * 9 2 1 11 11 C 1.38103 * 120.06841 * 179.72259 * 10 9 2 12 12 C 1.38881 * 119.92806 * 0.55493 * 11 10 9 13 13 O 1.35754 * 120.06761 * 179.74521 * 12 11 10 14 14 C 1.34831 * 117.00163 * 174.43676 * 13 12 11 15 15 H 1.08007 * 119.99444 * 5.05731 * 14 13 12 16 16 C 1.38651 * 120.00268 * 185.05658 * 14 13 12 17 17 N 1.31552 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47170 * 60.00066 * 18 16 14 20 20 H 1.48503 * 109.47338 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47081 * 299.99890 * 18 16 14 22 22 C 1.38876 * 119.86490 * 359.71933 * 12 11 10 23 23 C 1.38098 * 119.92927 * 0.02562 * 22 12 11 24 24 H 1.08994 * 109.46785 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46665 * 299.99818 * 1 2 3 26 26 H 1.08996 * 109.46996 * 59.99811 * 1 2 3 27 27 H 1.00896 * 110.99546 * 321.04355 * 4 2 1 28 28 H 1.09000 * 109.47647 * 59.99870 * 5 4 2 29 29 H 1.09003 * 109.47277 * 299.99746 * 5 4 2 30 30 H 1.08002 * 120.00248 * 305.00538 * 6 5 4 31 31 H 1.08001 * 119.99889 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.96711 * 0.02562 * 10 9 2 33 33 H 1.08001 * 120.03828 * 180.26963 * 11 10 9 34 34 H 0.97006 * 119.99881 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.03506 * 179.97438 * 22 12 11 36 36 H 1.08004 * 119.96843 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3468 6 6 2.5874 -0.5215 -3.5561 7 6 1.8854 -0.5255 -4.6640 8 17 0.3712 0.3206 -4.7353 9 6 2.0324 -0.7104 1.2304 10 6 2.0609 -2.0927 1.2657 11 6 2.5261 -2.7466 2.3897 12 6 2.9548 -2.0148 3.4894 13 8 3.4077 -2.6548 4.5977 14 6 3.9155 -1.8875 5.5831 15 1 3.8739 -0.8110 5.5051 16 6 4.4911 -2.4802 6.6966 17 7 4.5413 -3.7913 6.7918 18 14 5.1940 -1.4170 8.0622 19 1 4.1193 -0.5614 8.6264 20 1 5.7467 -2.2863 9.1318 21 1 6.2743 -0.5578 7.5144 22 6 2.9196 -0.6270 3.4530 23 6 2.4583 0.0211 2.3242 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.4497 -1.4978 -1.4101 28 1 2.7588 1.0464 -2.1182 29 1 1.0871 0.6165 -2.5525 30 1 3.5272 -1.0516 -3.5104 31 1 2.2470 -1.0593 -5.5304 32 1 1.7236 -2.6612 0.4117 33 1 2.5522 -3.8260 2.4151 34 1 4.9437 -4.2060 7.5710 35 1 3.2519 -0.0552 4.3068 36 1 2.4310 1.1004 2.2950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775336979.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:29 Heat of formation + Delta-G solvation = -12.273206 kcal Electronic energy + Delta-G solvation = -18704.703005 eV Core-core repulsion = 15600.972475 eV Total energy + Delta-G solvation = -3103.730529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82233 -39.16598 -37.92485 -36.95286 -34.58506 -34.06553 -31.80577 -31.05230 -29.22206 -27.33680 -25.96581 -23.97486 -23.31446 -21.53559 -20.78582 -19.72762 -18.79448 -17.64216 -16.63726 -16.43381 -16.20979 -15.57361 -15.47349 -15.39296 -15.26282 -14.67492 -14.42909 -14.07697 -13.92502 -13.72036 -13.50406 -13.19667 -12.93441 -12.76617 -12.69400 -12.50685 -12.22361 -12.16158 -12.06221 -11.78339 -11.50366 -11.13057 -10.75597 -10.04141 -9.71838 -9.27528 -8.82643 -8.44945 -6.12908 0.65751 0.75551 0.98916 1.35342 1.46008 1.46467 1.51741 2.19449 2.84577 3.16390 3.38349 3.56807 3.94760 3.99688 4.12983 4.22889 4.32725 4.38661 4.41812 4.64468 4.69919 4.74376 4.81130 4.90794 4.94973 5.14257 5.18541 5.26120 5.29496 5.32790 5.37955 5.63477 5.75908 5.81861 6.05849 6.17090 6.29666 6.50392 6.99867 7.82480 8.78445 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.045720 B = 0.002785 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.277446 B =10049.748102 C =10174.839869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.145 3.855 3 H 0.087 0.913 4 N -0.683 5.683 5 C 0.073 3.927 6 C -0.137 4.137 7 C -0.106 4.106 8 Cl -0.110 7.110 9 C -0.140 4.140 10 C -0.046 4.046 11 C -0.206 4.206 12 C 0.109 3.891 13 O -0.235 6.235 14 C -0.413 4.413 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.923 5.923 18 Si 1.018 2.982 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.242 4.242 23 C -0.069 4.069 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.345 0.655 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.272 0.728 35 H 0.117 0.883 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 10.050 -21.085 24.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.036 3.964 3 H 0.105 0.895 4 N -0.314 5.314 5 C -0.055 4.055 6 C -0.156 4.156 7 C -0.151 4.151 8 Cl -0.082 7.082 9 C -0.142 4.142 10 C -0.064 4.064 11 C -0.226 4.226 12 C 0.060 3.940 13 O -0.142 6.142 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.837 3.163 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.261 4.261 23 C -0.087 4.087 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.166 0.834 31 H 0.188 0.812 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.959 9.818 -20.747 23.714 hybrid contribution -0.505 0.073 0.795 0.945 sum -6.465 9.891 -19.951 23.188 Atomic orbital electron populations 1.22424 0.95635 1.02487 1.02429 1.20155 0.92892 0.96661 0.86714 0.89460 1.60491 1.58085 1.09848 1.02991 1.21239 1.00669 0.95125 0.88500 1.23238 1.00255 0.98781 0.93315 1.24859 0.87803 1.00841 1.01592 1.98357 1.34071 1.77444 1.98323 1.19622 1.05325 0.93297 0.95917 1.20660 0.96141 0.94238 0.95385 1.20464 1.09207 0.99403 0.93501 1.19931 0.93890 0.92486 0.87734 1.83939 1.70224 1.36487 1.23583 1.21776 1.38373 0.91366 0.97426 0.88216 1.26585 0.96954 0.97820 1.00781 1.70183 1.44199 1.10996 1.30760 0.84660 0.78825 0.77064 0.75733 1.18139 1.19625 1.18197 1.21209 1.10208 0.93484 1.01233 1.20921 0.96079 0.99960 0.91738 0.92395 0.92074 0.91514 0.83579 0.89967 0.93007 0.83430 0.81249 0.84101 0.87266 0.91895 0.86543 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.14 71.98 0.66 -2.64 16 2 C 0.15 3.21 2.79 44.17 0.12 3.34 16 3 H 0.09 1.82 7.66 -2.39 -0.02 1.80 16 4 N -0.68 -13.52 5.70 -499.46 -2.85 -16.37 16 5 C 0.07 1.18 5.78 85.56 0.49 1.67 16 6 C -0.14 -1.82 9.78 25.49 0.25 -1.57 16 7 C -0.11 -1.25 10.82 67.62 0.73 -0.52 16 8 Cl -0.11 -1.61 26.96 -2.72 -0.07 -1.69 16 9 C -0.14 -4.32 4.96 -19.84 -0.10 -4.42 16 10 C -0.05 -1.55 9.31 22.25 0.21 -1.35 16 11 C -0.21 -8.99 9.99 22.39 0.22 -8.77 16 12 C 0.11 5.57 6.65 22.58 0.15 5.72 16 13 O -0.24 -14.49 9.76 -22.79 -0.22 -14.71 16 14 C -0.41 -24.53 9.49 67.92 0.64 -23.89 16 15 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 16 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 17 N -0.92 -57.59 13.67 21.61 0.30 -57.30 16 18 Si 1.02 43.44 29.55 68.60 2.03 45.47 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 23 C -0.07 -2.37 9.66 22.25 0.21 -2.16 16 24 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.09 7.45 -2.39 -0.02 1.07 16 27 H 0.35 6.33 7.81 -89.70 -0.70 5.63 16 28 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 29 H 0.05 0.82 5.30 -2.39 -0.01 0.81 16 30 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.14 3.82 7.25 -2.91 -0.02 3.80 16 33 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 35 H 0.12 5.25 5.64 -2.91 -0.02 5.23 16 36 H 0.14 3.82 8.03 -2.91 -0.02 3.80 16 Total: -1.00 -70.37 321.14 3.85 -66.52 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.40 Total: 24.10 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 4.27 Total: -46.01 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -2.55 Total: -73.67 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.22 Total: -14.71 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.69 kcal Total: -70.37 3.85 -66.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775336979.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.244 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds