Wall clock time and date at job start Tue Mar 31 2020 05:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47092 * 103.09876 * 3 2 1 5 5 C 1.36934 * 120.00119 * 263.92277 * 4 3 2 6 6 H 1.08000 * 119.99993 * 199.23036 * 5 4 3 7 7 C 1.38811 * 120.00145 * 19.21855 * 5 4 3 8 8 N 1.31626 * 119.99590 * 22.41779 * 7 5 4 9 9 Si 1.86795 * 120.00392 * 202.41172 * 7 5 4 10 10 H 1.48506 * 109.47230 * 60.00471 * 9 7 5 11 11 H 1.48496 * 109.47394 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47419 * 300.00315 * 9 7 5 13 13 C 1.46503 * 120.00041 * 83.91827 * 4 3 2 14 14 C 1.52999 * 109.46745 * 90.00108 * 13 4 3 15 15 H 1.09001 * 109.47655 * 305.00181 * 14 13 4 16 16 O 1.42897 * 109.47594 * 65.00272 * 14 13 4 17 17 C 1.50705 * 109.47150 * 185.00307 * 14 13 4 18 18 C 1.38253 * 119.96484 * 99.99617 * 17 14 13 19 19 C 1.38222 * 120.06752 * 180.02562 * 18 17 14 20 20 C 1.38405 * 119.99828 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.03195 * 179.72229 * 20 19 18 22 22 C 1.38649 * 119.93414 * 0.02562 * 20 19 18 23 23 F 1.35096 * 120.03856 * 179.97438 * 22 20 19 24 24 C 1.38217 * 119.96183 * 280.02469 * 17 14 13 25 25 H 4.40637 * 5.51384 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47363 * 343.10007 * 3 2 1 27 27 H 1.09004 * 109.47004 * 223.09664 * 3 2 1 28 28 H 0.97003 * 119.99791 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47002 * 330.00600 * 13 4 3 30 30 H 1.08990 * 109.47265 * 210.00052 * 13 4 3 31 31 H 0.96698 * 113.99831 * 59.99214 * 16 14 13 32 32 H 1.07997 * 119.96987 * 0.02792 * 18 17 14 33 33 H 1.08003 * 119.99785 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.99676 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3139 -1.3453 5 6 3.4812 -0.6976 -2.2005 6 1 4.1175 -0.4931 -3.0489 7 6 3.0155 -1.9860 -1.9770 8 7 1.9314 -2.1779 -1.2555 9 14 3.9270 -3.4474 -2.7001 10 1 5.3165 -3.4725 -2.1766 11 1 3.2313 -4.7027 -2.3189 12 1 3.9577 -3.3288 -4.1801 13 6 3.2510 1.7094 -1.7757 14 6 4.6440 2.2362 -1.4252 15 1 4.8296 2.0927 -0.3607 16 8 5.6265 1.5243 -2.1802 17 6 4.7236 3.7045 -1.7554 18 6 4.5833 4.6463 -0.7530 19 6 4.6554 5.9935 -1.0536 20 6 4.8687 6.4008 -2.3590 21 9 4.9337 7.7176 -2.6544 22 6 5.0094 5.4563 -3.3642 23 9 5.2172 5.8516 -4.6393 24 6 4.9361 4.1081 -3.0601 25 1 -1.0500 0.0002 0.0002 26 1 3.0098 -0.9825 0.2987 27 1 3.0090 0.7513 0.7022 28 1 1.6061 -3.0783 -1.0989 29 1 2.4969 2.3106 -1.2679 30 1 3.0997 1.7712 -2.8533 31 1 5.5226 1.6073 -3.1380 32 1 4.4173 4.3291 0.2659 33 1 4.5453 6.7283 -0.2697 34 1 5.0455 3.3713 -3.8422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:39 Heat of formation + Delta-G solvation = -29.941392 kcal Electronic energy + Delta-G solvation = -21361.091971 eV Core-core repulsion = 17704.798611 eV Total energy + Delta-G solvation = -3656.293359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.52839 -48.60649 -39.55650 -36.98963 -35.29416 -31.74269 -31.56037 -30.97994 -30.64174 -27.55266 -26.05979 -24.18666 -23.21206 -21.80412 -20.75862 -18.21131 -17.58063 -17.28340 -17.12596 -16.52959 -16.35041 -15.92777 -15.04007 -15.01945 -14.59568 -14.56927 -14.30783 -14.04574 -13.59678 -13.40383 -12.97861 -12.79042 -12.58700 -12.18232 -11.54196 -11.44786 -11.31223 -10.92761 -10.84661 -10.69915 -10.30703 -10.03206 -9.87218 -9.18374 -8.99196 -8.86003 -8.65301 -8.43579 -6.99389 -5.80070 -3.22012 0.81327 0.89546 3.24808 3.38335 3.45368 3.47589 3.68481 4.08606 4.23692 4.33379 4.43183 4.50366 4.61551 4.80961 4.96509 5.04668 5.32777 5.52000 5.54483 5.66100 5.72858 5.77603 5.81484 5.85284 5.95942 6.12997 6.41648 6.57199 6.62814 6.69077 7.14448 7.36438 7.76322 8.03843 8.26109 9.06520 9.15274 9.73269 10.18686 11.23283 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.004464 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.131499 B = 6270.405968 C = 7013.678445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.098 4.098 3 C 0.267 3.733 4 N -0.575 5.575 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.889 5.889 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.284 1.284 13 C 0.125 3.875 14 C 0.122 3.878 15 H 0.106 0.894 16 O -0.537 6.537 17 C -0.080 4.080 18 C -0.094 4.094 19 C -0.123 4.123 20 C 0.053 3.947 21 F -0.134 7.134 22 C 0.071 3.929 23 F -0.131 7.131 24 C -0.121 4.121 25 H 0.190 0.810 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.254 0.746 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.365 0.635 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 13.961 1.122 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.101 4.101 3 C 0.142 3.858 4 N -0.293 5.293 5 C -0.386 4.386 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.531 5.531 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.211 1.211 13 C -0.004 4.004 14 C 0.060 3.940 15 H 0.124 0.876 16 O -0.341 6.341 17 C -0.082 4.082 18 C -0.112 4.112 19 C -0.142 4.142 20 C 0.033 3.967 21 F -0.113 7.113 22 C 0.050 3.950 23 F -0.110 7.110 24 C -0.140 4.140 25 H 0.207 0.793 26 H 0.112 0.888 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.212 0.788 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.850 13.655 1.679 14.588 hybrid contribution -0.160 -0.357 -1.341 1.397 sum 4.690 13.298 0.338 14.105 Atomic orbital electron populations 1.24196 0.95358 1.07376 1.04777 1.24252 0.95282 0.94487 0.96086 1.17746 0.82877 0.99746 0.85428 1.43900 1.74088 0.99971 1.11388 1.19091 1.24116 0.87108 1.08294 0.90705 1.24923 0.96112 0.98375 1.00208 1.70129 1.19410 1.20664 1.42939 0.86414 0.79744 0.82210 0.78674 1.20935 1.21883 1.21076 1.21409 0.92641 0.87232 0.99077 1.21883 0.92375 0.82637 0.97101 0.87578 1.86675 1.52654 1.73604 1.21178 1.20941 0.96208 0.98814 0.92245 1.21002 0.98846 0.91182 1.00204 1.21062 1.01490 0.97511 0.94112 1.17667 1.07718 0.77541 0.93749 1.91507 1.94158 1.31571 1.94019 1.17637 1.05813 0.92778 0.78728 1.91520 1.92491 1.91440 1.35535 1.20864 1.01820 0.93178 0.98134 0.79279 0.88828 0.94598 0.93522 0.93243 0.92655 0.78792 0.84032 0.83803 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.60 19.25 29.55 0.57 -6.03 16 2 C -0.10 -2.30 11.50 -37.13 -0.43 -2.73 16 3 C 0.27 5.98 5.41 -6.83 -0.04 5.94 16 4 N -0.58 -12.99 2.47 -176.58 -0.44 -13.43 16 5 C -0.26 -6.52 9.16 -15.06 -0.14 -6.66 16 6 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 7 C 0.00 0.08 4.82 -17.43 -0.08 -0.01 16 8 N -0.89 -24.64 9.61 55.49 0.53 -24.10 16 9 Si 0.90 21.14 29.61 -169.99 -5.03 16.11 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.12 2.24 5.33 -4.04 -0.02 2.21 16 14 C 0.12 1.83 3.45 -27.88 -0.10 1.73 16 15 H 0.11 1.59 8.00 -51.93 -0.42 1.18 16 16 O -0.54 -8.80 12.50 -35.23 -0.44 -9.24 16 17 C -0.08 -1.00 4.97 -104.62 -0.52 -1.52 16 18 C -0.09 -1.00 9.66 -39.58 -0.38 -1.38 16 19 C -0.12 -1.26 10.02 -39.53 -0.40 -1.66 16 20 C 0.05 0.65 7.31 -39.37 -0.29 0.37 16 21 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 22 C 0.07 0.91 7.31 -39.37 -0.29 0.62 16 23 F -0.13 -1.79 17.18 2.25 0.04 -1.75 16 24 C -0.12 -1.48 9.30 -39.53 -0.37 -1.85 16 25 H 0.19 3.52 7.80 -54.09 -0.42 3.10 16 26 H 0.09 2.32 6.58 -51.93 -0.34 1.98 16 27 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.37 4.94 7.50 45.56 0.34 5.28 16 32 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.14 1.57 6.78 -52.49 -0.36 1.21 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -29.94 310.41 -5.93 -35.87 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -2.84 Total: 4.52 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.48 Total: -10.96 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.10 Total: -37.53 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.44 Total: -9.24 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.94 -5.93 -35.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.929 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds