Wall clock time and date at job start Tue Mar 31 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47092 * 103.09876 * 3 2 1 5 5 C 1.36934 * 120.00119 * 263.92277 * 4 3 2 6 6 H 1.08000 * 119.99993 * 199.23036 * 5 4 3 7 7 C 1.38811 * 120.00145 * 19.21855 * 5 4 3 8 8 N 1.31626 * 119.99590 * 22.41779 * 7 5 4 9 9 Si 1.86795 * 120.00392 * 202.41172 * 7 5 4 10 10 H 1.48506 * 109.47230 * 60.00471 * 9 7 5 11 11 H 1.48496 * 109.47394 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47419 * 300.00315 * 9 7 5 13 13 C 1.46503 * 120.00041 * 83.91827 * 4 3 2 14 14 C 1.52999 * 109.46745 * 90.00108 * 13 4 3 15 15 H 1.09001 * 109.47655 * 305.00181 * 14 13 4 16 16 O 1.42897 * 109.47594 * 65.00272 * 14 13 4 17 17 C 1.50705 * 109.47150 * 185.00307 * 14 13 4 18 18 C 1.38253 * 119.96484 * 99.99617 * 17 14 13 19 19 C 1.38222 * 120.06752 * 180.02562 * 18 17 14 20 20 C 1.38405 * 119.99828 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.03195 * 179.72229 * 20 19 18 22 22 C 1.38649 * 119.93414 * 0.02562 * 20 19 18 23 23 F 1.35096 * 120.03856 * 179.97438 * 22 20 19 24 24 C 1.38217 * 119.96183 * 280.02469 * 17 14 13 25 25 H 4.40637 * 5.51384 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.47363 * 343.10007 * 3 2 1 27 27 H 1.09004 * 109.47004 * 223.09664 * 3 2 1 28 28 H 0.97003 * 119.99791 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47002 * 330.00600 * 13 4 3 30 30 H 1.08990 * 109.47265 * 210.00052 * 13 4 3 31 31 H 0.96698 * 113.99831 * 59.99214 * 16 14 13 32 32 H 1.07997 * 119.96987 * 0.02792 * 18 17 14 33 33 H 1.08003 * 119.99785 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.99676 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3139 -1.3453 5 6 3.4812 -0.6976 -2.2005 6 1 4.1175 -0.4931 -3.0489 7 6 3.0155 -1.9860 -1.9770 8 7 1.9314 -2.1779 -1.2555 9 14 3.9270 -3.4474 -2.7001 10 1 5.3165 -3.4725 -2.1766 11 1 3.2313 -4.7027 -2.3189 12 1 3.9577 -3.3288 -4.1801 13 6 3.2510 1.7094 -1.7757 14 6 4.6440 2.2362 -1.4252 15 1 4.8296 2.0927 -0.3607 16 8 5.6265 1.5243 -2.1802 17 6 4.7236 3.7045 -1.7554 18 6 4.5833 4.6463 -0.7530 19 6 4.6554 5.9935 -1.0536 20 6 4.8687 6.4008 -2.3590 21 9 4.9337 7.7176 -2.6544 22 6 5.0094 5.4563 -3.3642 23 9 5.2172 5.8516 -4.6393 24 6 4.9361 4.1081 -3.0601 25 1 -1.0500 0.0002 0.0002 26 1 3.0098 -0.9825 0.2987 27 1 3.0090 0.7513 0.7022 28 1 1.6061 -3.0783 -1.0989 29 1 2.4969 2.3106 -1.2679 30 1 3.0997 1.7712 -2.8533 31 1 5.5226 1.6073 -3.1380 32 1 4.4173 4.3291 0.2659 33 1 4.5453 6.7283 -0.2697 34 1 5.0455 3.3713 -3.8422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:38 Heat of formation + Delta-G solvation = -47.271012 kcal Electronic energy + Delta-G solvation = -21361.843439 eV Core-core repulsion = 17704.798611 eV Total energy + Delta-G solvation = -3657.044828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.51156 -49.59577 -40.58151 -38.34153 -36.81672 -33.47405 -33.14648 -32.07458 -31.77878 -28.94718 -27.85764 -25.54391 -24.17541 -23.15870 -22.08633 -19.33955 -19.17421 -18.43169 -18.11205 -18.08177 -17.34946 -17.17937 -16.77917 -16.02520 -15.90334 -15.68433 -15.52984 -15.28665 -15.07506 -14.84906 -14.46386 -13.93807 -13.65440 -13.37376 -13.25091 -12.91667 -12.67593 -12.45777 -12.31934 -12.15098 -12.12213 -11.84698 -11.22521 -10.74616 -10.60040 -10.27973 -10.06951 -9.68992 -8.78828 -7.76537 -5.17370 -0.13499 0.01429 1.50504 1.54940 1.59903 2.29418 2.39541 2.56313 2.64587 2.77133 3.28068 3.34643 3.48324 3.61073 3.70915 3.94259 4.08700 4.13291 4.17240 4.35822 4.50842 4.73589 4.79480 4.83690 4.90924 4.99533 5.04091 5.15177 5.34724 5.47989 5.68647 5.73749 5.77624 6.35635 6.91811 7.17319 7.39839 7.89076 8.30877 9.24433 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.004464 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.131499 B = 6270.405968 C = 7013.678445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.131 4.131 3 C 0.268 3.732 4 N -0.590 5.590 5 C -0.249 4.249 6 H 0.077 0.923 7 C -0.049 4.049 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.283 1.283 11 H -0.303 1.303 12 H -0.281 1.281 13 C 0.125 3.875 14 C 0.139 3.861 15 H 0.109 0.891 16 O -0.556 6.556 17 C -0.088 4.088 18 C -0.085 4.085 19 C -0.112 4.112 20 C 0.046 3.954 21 F -0.140 7.140 22 C 0.052 3.948 23 F -0.141 7.141 24 C -0.122 4.122 25 H 0.218 0.782 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.243 0.757 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.376 0.624 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 15.450 1.745 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.134 4.134 3 C 0.143 3.857 4 N -0.309 5.309 5 C -0.379 4.379 6 H 0.095 0.905 7 C -0.245 4.245 8 N -0.561 5.561 9 Si 0.783 3.217 10 H -0.210 1.210 11 H -0.230 1.230 12 H -0.208 1.208 13 C -0.002 4.002 14 C 0.077 3.923 15 H 0.127 0.873 16 O -0.362 6.362 17 C -0.090 4.090 18 C -0.103 4.103 19 C -0.130 4.130 20 C 0.026 3.974 21 F -0.118 7.118 22 C 0.032 3.968 23 F -0.120 7.120 24 C -0.140 4.140 25 H 0.235 0.765 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.224 0.776 32 H 0.186 0.814 33 H 0.193 0.807 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.235 15.191 2.282 16.229 hybrid contribution -0.270 -0.690 -1.543 1.712 sum 4.966 14.501 0.739 15.345 Atomic orbital electron populations 1.24988 0.96404 1.06342 1.03832 1.24715 0.96188 0.95458 0.97043 1.17723 0.82644 0.99246 0.86104 1.44063 1.74353 1.01268 1.11263 1.19373 1.22631 0.87853 1.08021 0.90483 1.25489 0.97025 1.00353 1.01619 1.70276 1.20852 1.19922 1.45047 0.85564 0.78466 0.79614 0.78060 1.20959 1.22993 1.20760 1.21568 0.94809 0.85035 0.98776 1.21520 0.89824 0.83873 0.97041 0.87296 1.86638 1.53092 1.74227 1.22277 1.20689 0.97873 0.97575 0.92839 1.21305 0.97082 0.90920 1.00951 1.21364 0.99820 0.97990 0.93864 1.17953 1.07758 0.77204 0.94500 1.91494 1.94213 1.31962 1.94159 1.17807 1.07101 0.93263 0.78643 1.91491 1.92734 1.91536 1.36229 1.20936 1.01444 0.93190 0.98468 0.76478 0.91914 0.91107 0.94715 0.92370 0.93249 0.77601 0.81441 0.80712 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.81 19.25 74.32 1.43 -11.38 16 2 C -0.13 -6.06 11.50 31.12 0.36 -5.70 16 3 C 0.27 11.84 5.41 84.57 0.46 12.30 16 4 N -0.59 -26.17 2.47 -712.56 -1.76 -27.93 16 5 C -0.25 -12.52 9.16 84.03 0.77 -11.75 16 6 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 7 C -0.05 -2.61 4.82 84.86 0.41 -2.20 16 8 N -0.92 -51.47 9.61 21.65 0.21 -51.27 16 9 Si 0.95 43.97 29.61 68.60 2.03 46.01 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.12 4.27 5.33 86.38 0.46 4.73 16 14 C 0.14 3.86 3.45 29.85 0.10 3.96 16 15 H 0.11 2.97 8.00 -2.39 -0.02 2.96 16 16 O -0.56 -17.39 12.50 -148.98 -1.86 -19.26 16 17 C -0.09 -1.98 4.97 -19.86 -0.10 -2.07 16 18 C -0.08 -1.49 9.66 22.27 0.22 -1.28 16 19 C -0.11 -1.90 10.02 22.31 0.22 -1.68 16 20 C 0.05 1.02 7.31 22.41 0.16 1.19 16 21 F -0.14 -3.35 17.18 44.97 0.77 -2.58 16 22 C 0.05 1.26 7.31 22.41 0.16 1.43 16 23 F -0.14 -3.78 17.18 44.97 0.77 -3.00 16 24 C -0.12 -2.78 9.30 22.31 0.21 -2.57 16 25 H 0.22 7.66 7.80 -4.42 -0.03 7.62 16 26 H 0.06 3.15 6.58 -2.39 -0.02 3.14 16 27 H 0.07 2.55 8.12 -2.38 -0.02 2.53 16 28 H 0.24 13.73 8.31 -92.71 -0.77 12.95 16 29 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 31 H 0.38 9.72 7.50 -74.06 -0.56 9.16 16 32 H 0.17 2.11 8.03 -2.91 -0.02 2.09 16 33 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.15 3.12 6.78 -2.91 -0.02 3.10 16 Total: -1.00 -63.76 310.41 5.61 -58.16 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.58 Total: 14.90 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.86 Total: -15.03 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.55 Total: -79.20 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.86 Total: -19.26 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.55 Total: -5.58 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.76 5.61 -58.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.885 kcal (2) G-P(sol) polarization free energy of solvation -63.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds