Wall clock time and date at job start Tue Mar 31 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47602 * 309.71302 * 3 2 1 5 5 C 1.36936 * 120.00014 * 91.54621 * 4 3 2 6 6 H 1.07995 * 120.00366 * 218.75031 * 5 4 3 7 7 C 1.38820 * 119.99612 * 38.75267 * 5 4 3 8 8 N 1.31620 * 119.99657 * 213.72216 * 7 5 4 9 9 Si 1.86795 * 119.99894 * 33.72235 * 7 5 4 10 10 H 1.48500 * 109.47349 * 84.82272 * 9 7 5 11 11 H 1.48505 * 109.46843 * 204.81887 * 9 7 5 12 12 H 1.48503 * 109.47506 * 324.81828 * 9 7 5 13 13 C 1.46507 * 119.99786 * 271.82871 * 4 3 2 14 14 C 1.52996 * 109.47037 * 274.96288 * 13 4 3 15 15 H 1.08996 * 109.47269 * 55.01398 * 14 13 4 16 16 O 1.42899 * 109.47088 * 295.01546 * 14 13 4 17 17 C 1.50701 * 109.46905 * 175.01259 * 14 13 4 18 18 C 1.38251 * 119.96433 * 262.17304 * 17 14 13 19 19 C 1.38214 * 120.07020 * 179.97438 * 18 17 14 20 20 C 1.38411 * 120.00255 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.03843 * 180.02562 * 20 19 18 22 22 C 1.38648 * 119.92438 * 359.97438 * 20 19 18 23 23 F 1.35108 * 120.03485 * 179.97438 * 22 20 19 24 24 C 1.38210 * 119.96411 * 81.90077 * 17 14 13 25 25 H 4.40642 * 5.51416 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.47288 * 189.71402 * 3 2 1 27 27 H 1.09000 * 109.47508 * 69.71797 * 3 2 1 28 28 H 0.96995 * 119.99773 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46642 * 34.96661 * 13 4 3 30 30 H 1.09002 * 109.46521 * 154.96475 * 13 4 3 31 31 H 0.96706 * 113.99634 * 304.44443 * 16 14 13 32 32 H 1.07996 * 119.96743 * 359.97438 * 18 17 14 33 33 H 1.08007 * 120.00083 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99735 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8816 1.0625 5 6 3.3939 -2.1991 0.7934 6 1 3.1458 -2.9577 1.5208 7 6 3.9755 -2.5594 -0.4145 8 7 3.6545 -3.7014 -0.9846 9 14 5.2135 -1.4233 -1.2306 10 1 6.5634 -1.6738 -0.6647 11 1 5.2340 -1.6822 -2.6928 12 1 4.8274 -0.0109 -0.9834 13 6 3.3406 -0.3559 2.4144 14 6 4.7283 0.2817 2.5078 15 1 4.8352 1.0353 1.7277 16 8 5.7276 -0.7255 2.3374 17 6 4.8934 0.9297 3.8583 18 6 4.6828 2.2885 4.0026 19 6 4.8331 2.8850 5.2403 20 6 5.1953 2.1222 6.3369 21 9 5.3419 2.7044 7.5471 22 6 5.4065 0.7595 6.1921 23 9 5.7607 0.0128 7.2610 24 6 5.2497 0.1642 4.9525 25 1 -1.0498 -0.0001 0.0004 26 1 3.0089 1.0138 0.1734 27 1 3.0095 -0.3554 -0.9639 28 1 4.0606 -3.9530 -1.8288 29 1 2.5806 0.3945 2.6319 30 1 3.2652 -1.1694 3.1359 31 1 5.6506 -1.4646 2.9561 32 1 4.4005 2.8844 3.1473 33 1 4.6686 3.9467 5.3516 34 1 5.4093 -0.8980 4.8394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201709.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:40 Heat of formation + Delta-G solvation = -29.485111 kcal Electronic energy + Delta-G solvation = -21484.266172 eV Core-core repulsion = 17827.992598 eV Total energy + Delta-G solvation = -3656.273574 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.52873 -48.60653 -39.56501 -37.09133 -35.37899 -32.30562 -31.79803 -31.04649 -30.83035 -27.93136 -26.28736 -24.29487 -23.22762 -21.81198 -20.70414 -18.22480 -18.09402 -17.35046 -17.13627 -16.54640 -16.36209 -16.01759 -15.28712 -15.02674 -14.62245 -14.57715 -14.46443 -14.12958 -13.98560 -13.32092 -13.16637 -12.81105 -12.59889 -12.42375 -12.22044 -11.55209 -11.48102 -11.02980 -10.91109 -10.58918 -10.48386 -10.06407 -9.78547 -9.42346 -9.22986 -9.15932 -8.70900 -8.51508 -7.03387 -6.15448 -3.47932 0.80495 0.89354 3.23813 3.35568 3.48020 3.49930 3.56628 3.65254 3.68691 4.23162 4.42369 4.49764 4.54620 4.81398 4.92140 5.00287 5.09529 5.21899 5.35287 5.49392 5.62735 5.70854 5.75354 5.79681 5.92291 6.06158 6.13704 6.32115 6.51339 6.58663 6.64446 6.72297 7.88246 8.11383 8.26366 8.41251 8.83136 9.59832 9.97734 10.99076 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.004897 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.643282 B = 5716.688944 C = 6251.194267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.161 4.161 3 C 0.237 3.763 4 N -0.580 5.580 5 C -0.282 4.282 6 H 0.074 0.926 7 C 0.054 3.946 8 N -0.875 5.875 9 Si 0.865 3.135 10 H -0.280 1.280 11 H -0.303 1.303 12 H -0.267 1.267 13 C 0.123 3.877 14 C 0.119 3.881 15 H 0.103 0.897 16 O -0.534 6.534 17 C -0.081 4.081 18 C -0.096 4.096 19 C -0.123 4.123 20 C 0.053 3.947 21 F -0.134 7.134 22 C 0.071 3.929 23 F -0.131 7.131 24 C -0.119 4.119 25 H 0.204 0.796 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.371 0.629 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 12.228 10.177 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.164 4.164 3 C 0.112 3.888 4 N -0.299 5.299 5 C -0.410 4.410 6 H 0.092 0.908 7 C -0.150 4.150 8 N -0.512 5.512 9 Si 0.692 3.308 10 H -0.206 1.206 11 H -0.230 1.230 12 H -0.192 1.192 13 C -0.004 4.004 14 C 0.056 3.944 15 H 0.121 0.879 16 O -0.339 6.339 17 C -0.082 4.082 18 C -0.115 4.115 19 C -0.142 4.142 20 C 0.032 3.968 21 F -0.113 7.113 22 C 0.051 3.949 23 F -0.110 7.110 24 C -0.138 4.138 25 H 0.221 0.779 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.218 0.782 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.716 12.428 9.638 15.820 hybrid contribution 0.422 0.133 0.425 0.613 sum 2.138 12.560 10.063 16.235 Atomic orbital electron populations 1.24676 0.95714 1.03981 1.03329 1.25039 0.95991 0.97406 0.97969 1.18523 0.81984 0.94051 0.94275 1.43912 1.72524 1.08417 1.05040 1.18500 1.37479 0.80986 1.04013 0.90820 1.25464 0.97253 0.95387 0.96904 1.70071 1.39737 1.24795 1.16640 0.87222 0.84682 0.82183 0.76682 1.20626 1.22991 1.19215 1.21744 0.92361 0.97307 0.88999 1.21819 0.91957 0.90459 0.90153 0.87944 1.86652 1.51993 1.33763 1.61474 1.20955 0.96079 0.93876 0.97321 1.20973 0.99227 0.94240 0.97032 1.21044 1.01119 1.00715 0.91306 1.17661 1.07041 0.89999 0.82051 1.91504 1.93660 1.84206 1.41897 1.17653 1.04435 0.87775 0.85065 1.91525 1.89509 1.75944 1.53988 1.20881 1.01312 1.01710 0.89894 0.77894 0.92072 0.90039 0.92536 0.93143 0.91762 0.78197 0.84188 0.83858 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.71 19.25 29.55 0.57 -4.14 16 2 C -0.16 -3.29 13.68 -37.13 -0.51 -3.80 16 3 C 0.24 4.89 4.56 -6.83 -0.03 4.86 16 4 N -0.58 -12.51 1.94 -176.57 -0.34 -12.86 16 5 C -0.28 -7.29 9.51 -15.06 -0.14 -7.43 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 7 C 0.05 1.45 5.02 -17.43 -0.09 1.37 16 8 N -0.87 -25.52 13.97 55.49 0.78 -24.75 16 9 Si 0.86 20.97 26.58 -169.99 -4.52 16.45 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -5.97 5.67 56.52 0.32 -5.65 16 13 C 0.12 2.10 5.28 -4.04 -0.02 2.08 16 14 C 0.12 1.80 3.44 -27.88 -0.10 1.70 16 15 H 0.10 1.59 8.02 -51.93 -0.42 1.17 16 16 O -0.53 -9.26 12.84 -35.23 -0.45 -9.71 16 17 C -0.08 -1.01 4.98 -104.63 -0.52 -1.53 16 18 C -0.10 -1.03 9.67 -39.59 -0.38 -1.41 16 19 C -0.12 -1.26 10.02 -39.53 -0.40 -1.66 16 20 C 0.05 0.65 7.31 -39.37 -0.29 0.36 16 21 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 22 C 0.07 0.92 7.31 -39.37 -0.29 0.63 16 23 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 24 C -0.12 -1.47 9.32 -39.53 -0.37 -1.84 16 25 H 0.20 2.86 7.80 -54.10 -0.42 2.44 16 26 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 27 H 0.08 1.84 4.52 -51.93 -0.23 1.60 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 31 H 0.37 5.42 7.60 45.56 0.35 5.77 16 32 H 0.14 1.21 8.05 -52.49 -0.42 0.79 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.63 6.81 -52.49 -0.36 1.27 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -30.60 310.34 -5.17 -35.77 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -2.82 Total: 4.71 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.56 Total: -10.83 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.43 Total: -37.60 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.45 Total: -9.71 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.52 Total: 16.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.60 -5.17 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201709.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.284 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds