Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00245 * 2 1 4 4 N 1.46899 * 109.47828 * 124.15640 * 3 2 1 5 5 C 1.46898 * 110.99629 * 301.54711 * 4 3 2 6 6 C 1.50700 * 109.47156 * 288.93344 * 5 4 3 7 7 H 1.08002 * 119.99563 * 354.86723 * 6 5 4 8 8 C 1.37878 * 120.00320 * 174.87296 * 6 5 4 9 9 N 1.31515 * 119.99736 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00061 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 90.00007 * 10 8 6 12 12 H 1.48503 * 109.47204 * 209.99848 * 10 8 6 13 13 H 1.48503 * 109.47331 * 330.00171 * 10 8 6 14 14 C 1.46905 * 110.99622 * 65.49445 * 4 3 2 15 15 C 1.50698 * 109.46837 * 66.04931 * 14 4 3 16 16 C 1.38168 * 120.02232 * 259.72027 * 15 14 4 17 17 C 1.38343 * 120.04068 * 179.71990 * 16 15 14 18 18 Cl 1.73603 * 119.95511 * 180.27665 * 17 16 15 19 19 C 1.38382 * 120.08609 * 0.56481 * 17 16 15 20 20 C 1.38123 * 120.04228 * 359.71268 * 19 17 16 21 21 C 1.38702 * 120.02160 * 80.00047 * 15 14 4 22 22 O 1.35923 * 120.04250 * 0.02562 * 21 15 14 23 23 H 1.07997 * 120.00083 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99941 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.00007 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46798 * 4.15502 * 3 2 1 27 27 H 1.09005 * 109.47088 * 244.16144 * 3 2 1 28 28 H 1.08998 * 109.47906 * 48.93654 * 5 4 3 29 29 H 1.09006 * 109.47084 * 168.93787 * 5 4 3 30 30 H 0.97006 * 119.99877 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46783 * 186.05224 * 14 4 3 32 32 H 1.08997 * 109.46940 * 306.04803 * 14 4 3 33 33 H 1.07999 * 119.97677 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98180 * 179.69685 * 19 17 16 35 35 H 1.08009 * 120.02071 * 179.97438 * 20 19 17 36 36 H 0.96694 * 114.00147 * 89.99624 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9819 1.3404 1.1460 5 6 2.2514 1.1837 2.4108 6 6 1.4553 2.4326 2.6892 7 1 1.5525 3.2907 2.0406 8 6 0.6030 2.4799 3.7720 9 7 0.4851 1.4352 4.5621 10 14 -0.3833 4.0282 4.1174 11 1 -1.6867 3.9530 3.4099 12 1 -0.6195 4.1490 5.5786 13 1 0.3722 5.2136 3.6384 14 6 4.0293 0.3190 1.0130 15 6 4.9104 0.6534 -0.1630 16 6 4.7295 0.0041 -1.3691 17 6 5.5343 0.3149 -2.4505 18 17 5.3003 -0.4972 -3.9669 19 6 6.5296 1.2679 -2.3233 20 6 6.7173 1.9151 -1.1176 21 6 5.9073 1.6090 -0.0335 22 8 6.0909 2.2443 1.1539 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3575 2.1322 0.0745 27 1 2.6331 1.3957 -0.9250 28 1 1.5761 0.3313 2.3374 29 1 2.9605 1.0166 3.2217 30 1 -0.1148 1.4683 5.3237 31 1 4.6302 0.2944 1.9220 32 1 3.5681 -0.6560 0.8558 33 1 3.9560 -0.7430 -1.4690 34 1 7.1602 1.5057 -3.1673 35 1 7.4944 2.6586 -1.0186 36 1 6.7137 1.8002 1.7455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814171794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = 1.983929 kcal Electronic energy + Delta-G solvation = -19727.404993 eV Core-core repulsion = 16624.292699 eV Total energy + Delta-G solvation = -3103.112293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97717 -37.23299 -37.04134 -35.86811 -32.77248 -32.67253 -31.02603 -29.53383 -27.16271 -26.20379 -23.89835 -22.64822 -21.52237 -20.77812 -18.82835 -18.19367 -16.47364 -16.16354 -16.03526 -15.36782 -14.94909 -14.57737 -14.31024 -14.01363 -13.66963 -13.33986 -13.16957 -12.69207 -12.30810 -12.12982 -11.96700 -11.42277 -11.26882 -11.06895 -10.95924 -10.89853 -10.70404 -10.58060 -10.45406 -10.28937 -9.89256 -9.22411 -8.96791 -8.65903 -8.39064 -8.36340 -7.19595 -5.97618 -3.97647 1.09329 1.23338 2.09758 2.91760 3.34390 3.40696 3.45456 3.50175 4.30651 4.47395 4.75500 4.81566 5.15100 5.15223 5.38159 5.39956 5.54866 5.55108 5.71611 5.81312 5.92547 6.04946 6.12433 6.17659 6.22305 6.44066 6.53642 6.66735 6.71721 7.17724 7.26894 7.36351 7.45972 7.82882 7.86777 8.11675 8.22046 8.58292 9.10126 9.65875 11.12984 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.004719 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.325407 B = 5932.036401 C = 6668.375027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.182 4.182 3 C 0.089 3.911 4 N -0.515 5.515 5 C 0.192 3.808 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.094 3.906 15 C -0.078 4.078 16 C -0.091 4.091 17 C -0.047 4.047 18 Cl -0.079 7.079 19 C -0.103 4.103 20 C -0.140 4.140 21 C 0.137 3.863 22 O -0.477 6.477 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.006 0.994 29 H 0.023 0.977 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 -4.165 -12.660 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.201 4.201 3 C -0.039 4.039 4 N -0.237 5.237 5 C 0.068 3.932 6 C -0.537 4.537 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.034 4.034 15 C -0.080 4.080 16 C -0.110 4.110 17 C -0.073 4.073 18 Cl -0.050 7.050 19 C -0.122 4.122 20 C -0.159 4.159 21 C 0.091 3.909 22 O -0.286 6.286 23 H 0.115 0.885 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 11.285 -3.409 -12.807 17.407 hybrid contribution -0.746 -0.473 0.395 0.968 sum 10.539 -3.882 -12.412 16.740 Atomic orbital electron populations 1.23686 0.96030 1.01121 1.00555 1.23509 0.96731 0.99650 1.00244 1.21261 0.94647 0.94354 0.93651 1.62447 1.12575 1.44633 1.04092 1.19774 0.92236 0.97081 0.84154 1.21109 1.22600 0.99320 1.10669 0.92041 1.24941 0.97050 0.96280 0.96194 1.69957 1.38253 1.29337 1.16441 0.86562 0.80307 0.83708 0.77239 1.20841 1.21358 1.19793 1.20898 0.93651 0.94242 0.94603 1.20350 0.96898 0.94972 0.95755 1.20898 0.98816 1.00482 0.90850 1.20822 0.99991 0.98905 0.87619 1.98354 1.96611 1.78760 1.31293 1.20809 0.97539 0.95821 0.98024 1.21364 1.00567 1.01167 0.92768 1.18348 0.93994 0.91569 0.86991 1.84975 1.67280 1.50421 1.25952 0.88475 0.89716 0.88819 0.89864 0.92182 0.97652 0.95934 0.93091 0.90304 0.94637 0.84949 0.85028 0.84748 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 14.32 29.01 0.42 -2.75 16 2 C -0.18 -3.31 7.39 -36.03 -0.27 -3.58 16 3 C 0.09 1.74 5.44 -4.98 -0.03 1.71 16 4 N -0.52 -10.88 4.66 -238.96 -1.11 -11.99 16 5 C 0.19 4.90 4.57 -4.98 -0.02 4.88 16 6 C -0.50 -13.94 8.53 -34.44 -0.29 -14.24 16 7 H 0.06 1.74 7.61 -52.49 -0.40 1.34 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.09 1.63 4.61 -4.97 -0.02 1.60 16 15 C -0.08 -1.17 4.59 -104.48 -0.48 -1.65 16 16 C -0.09 -1.23 8.38 -39.57 -0.33 -1.56 16 17 C -0.05 -0.58 6.32 -39.49 -0.25 -0.83 16 18 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.40 16 19 C -0.10 -1.16 9.82 -39.57 -0.39 -1.55 16 20 C -0.14 -1.65 9.99 -39.44 -0.39 -2.04 16 21 C 0.14 1.92 6.68 -39.23 -0.26 1.66 16 22 O -0.48 -6.86 12.74 -19.50 -0.25 -7.10 16 23 H 0.10 1.80 7.84 -52.49 -0.41 1.38 16 24 H 0.08 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.09 1.58 6.84 -52.48 -0.36 1.23 16 26 H 0.08 1.79 7.01 -51.93 -0.36 1.42 16 27 H 0.06 1.08 6.35 -51.93 -0.33 0.75 16 28 H 0.01 0.15 6.68 -51.93 -0.35 -0.19 16 29 H 0.02 0.61 7.83 -51.93 -0.41 0.21 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 32 H 0.04 0.60 6.27 -51.93 -0.33 0.27 16 33 H 0.13 1.72 8.03 -52.49 -0.42 1.29 16 34 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.39 3.58 9.06 45.56 0.41 4.00 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -31.07 320.16 -8.49 -39.56 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.75 Total: 3.03 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.42 Total: -16.84 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.38 Total: -37.86 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.25 Total: -7.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.07 -8.49 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.543 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds