Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00245 * 2 1 4 4 N 1.46899 * 109.47828 * 124.15640 * 3 2 1 5 5 C 1.46898 * 110.99629 * 301.54711 * 4 3 2 6 6 C 1.50700 * 109.47156 * 288.93344 * 5 4 3 7 7 H 1.08002 * 119.99563 * 354.86723 * 6 5 4 8 8 C 1.37878 * 120.00320 * 174.87296 * 6 5 4 9 9 N 1.31515 * 119.99736 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00061 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 90.00007 * 10 8 6 12 12 H 1.48503 * 109.47204 * 209.99848 * 10 8 6 13 13 H 1.48503 * 109.47331 * 330.00171 * 10 8 6 14 14 C 1.46905 * 110.99622 * 65.49445 * 4 3 2 15 15 C 1.50698 * 109.46837 * 66.04931 * 14 4 3 16 16 C 1.38168 * 120.02232 * 259.72027 * 15 14 4 17 17 C 1.38343 * 120.04068 * 179.71990 * 16 15 14 18 18 Cl 1.73603 * 119.95511 * 180.27665 * 17 16 15 19 19 C 1.38382 * 120.08609 * 0.56481 * 17 16 15 20 20 C 1.38123 * 120.04228 * 359.71268 * 19 17 16 21 21 C 1.38702 * 120.02160 * 80.00047 * 15 14 4 22 22 O 1.35923 * 120.04250 * 0.02562 * 21 15 14 23 23 H 1.07997 * 120.00083 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99941 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.00007 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46798 * 4.15502 * 3 2 1 27 27 H 1.09005 * 109.47088 * 244.16144 * 3 2 1 28 28 H 1.08998 * 109.47906 * 48.93654 * 5 4 3 29 29 H 1.09006 * 109.47084 * 168.93787 * 5 4 3 30 30 H 0.97006 * 119.99877 * 180.02562 * 9 8 6 31 31 H 1.09002 * 109.46783 * 186.05224 * 14 4 3 32 32 H 1.08997 * 109.46940 * 306.04803 * 14 4 3 33 33 H 1.07999 * 119.97677 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.98180 * 179.69685 * 19 17 16 35 35 H 1.08009 * 120.02071 * 179.97438 * 20 19 17 36 36 H 0.96694 * 114.00147 * 89.99624 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9819 1.3404 1.1460 5 6 2.2514 1.1837 2.4108 6 6 1.4553 2.4326 2.6892 7 1 1.5525 3.2907 2.0406 8 6 0.6030 2.4799 3.7720 9 7 0.4851 1.4352 4.5621 10 14 -0.3833 4.0282 4.1174 11 1 -1.6867 3.9530 3.4099 12 1 -0.6195 4.1490 5.5786 13 1 0.3722 5.2136 3.6384 14 6 4.0293 0.3190 1.0130 15 6 4.9104 0.6534 -0.1630 16 6 4.7295 0.0041 -1.3691 17 6 5.5343 0.3149 -2.4505 18 17 5.3003 -0.4972 -3.9669 19 6 6.5296 1.2679 -2.3233 20 6 6.7173 1.9151 -1.1176 21 6 5.9073 1.6090 -0.0335 22 8 6.0909 2.2443 1.1539 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3575 2.1322 0.0745 27 1 2.6331 1.3957 -0.9250 28 1 1.5761 0.3313 2.3374 29 1 2.9605 1.0166 3.2217 30 1 -0.1148 1.4683 5.3237 31 1 4.6302 0.2944 1.9220 32 1 3.5681 -0.6560 0.8558 33 1 3.9560 -0.7430 -1.4690 34 1 7.1602 1.5057 -3.1673 35 1 7.4944 2.6586 -1.0186 36 1 6.7137 1.8002 1.7455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814171794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = -18.375124 kcal Electronic energy + Delta-G solvation = -19728.287827 eV Core-core repulsion = 16624.292699 eV Total energy + Delta-G solvation = -3103.995128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05744 -38.76901 -38.02955 -36.86181 -34.83161 -34.05228 -32.40544 -30.59868 -29.03836 -27.61680 -25.64654 -23.65234 -23.03013 -22.21177 -20.33115 -19.23912 -18.34314 -17.34602 -17.27825 -16.89540 -16.27092 -16.05114 -16.02395 -15.38598 -15.03720 -14.64808 -14.15789 -14.07084 -13.93419 -13.38978 -13.27555 -13.07480 -12.87020 -12.65057 -12.49139 -12.25632 -12.17581 -12.05267 -11.99905 -11.85936 -11.43164 -11.16442 -10.57113 -10.22278 -9.91270 -9.39144 -8.89778 -8.14628 -6.22793 0.10323 0.23786 1.15832 1.40840 1.41834 1.45247 1.53401 2.41681 2.51342 3.17901 3.34987 3.50680 3.75623 3.84452 4.06996 4.12337 4.26703 4.36327 4.51004 4.56561 4.64133 4.79187 4.92774 4.96576 5.06397 5.14540 5.20979 5.24872 5.38521 5.50030 5.68884 5.69736 5.72347 5.91257 6.14003 6.40450 6.67202 6.92570 6.95327 7.45754 8.95238 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.004719 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.325407 B = 5932.036401 C = 6668.375027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.188 4.188 3 C 0.095 3.905 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.512 4.512 7 H 0.053 0.947 8 C 0.008 3.992 9 N -0.932 5.932 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.099 3.901 15 C -0.097 4.097 16 C -0.093 4.093 17 C -0.053 4.053 18 Cl -0.069 7.069 19 C -0.092 4.092 20 C -0.135 4.135 21 C 0.126 3.874 22 O -0.499 6.499 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.077 0.923 28 H -0.016 1.016 29 H -0.003 1.003 30 H 0.262 0.738 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 -3.713 -14.156 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.207 4.207 3 C -0.033 4.033 4 N -0.247 5.247 5 C 0.085 3.915 6 C -0.551 4.551 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.029 4.029 15 C -0.099 4.099 16 C -0.113 4.113 17 C -0.079 4.079 18 Cl -0.040 7.040 19 C -0.110 4.110 20 C -0.153 4.153 21 C 0.081 3.919 22 O -0.312 6.312 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.002 0.998 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.085 -2.966 -14.320 18.971 hybrid contribution -0.907 -0.645 0.799 1.370 sum 11.179 -3.611 -13.521 17.911 Atomic orbital electron populations 1.23841 0.96119 1.01715 0.99994 1.23527 0.96925 0.99571 1.00695 1.21147 0.94269 0.94233 0.93622 1.62296 1.12952 1.46683 1.02755 1.19364 0.91187 0.95304 0.85668 1.21362 1.23152 0.99871 1.10694 0.92922 1.25735 0.98036 0.99305 0.95910 1.70069 1.39007 1.31255 1.16927 0.85548 0.78923 0.79910 0.77242 1.19966 1.20748 1.19386 1.20830 0.92799 0.93336 0.95912 1.20110 0.97602 0.96813 0.95351 1.20894 0.99196 1.00404 0.90776 1.20911 1.00057 0.99234 0.87720 1.98360 1.96600 1.78616 1.30410 1.21153 0.96869 0.94452 0.98569 1.21583 1.00473 1.01290 0.92004 1.18556 0.94355 0.91467 0.87563 1.84911 1.68271 1.51251 1.26736 0.89494 0.87578 0.87301 0.92399 0.90466 0.99832 0.98506 0.92898 0.90882 0.94287 0.84804 0.82224 0.82363 0.73699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.38 14.32 67.78 0.97 -5.41 16 2 C -0.19 -6.82 7.39 25.64 0.19 -6.63 16 3 C 0.10 3.75 5.44 85.56 0.47 4.21 16 4 N -0.52 -22.59 4.66 -909.94 -4.24 -26.83 16 5 C 0.21 11.09 4.57 85.56 0.39 11.49 16 6 C -0.51 -29.28 8.53 25.60 0.22 -29.06 16 7 H 0.05 3.04 7.61 -2.91 -0.02 3.02 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 10 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.10 3.45 4.61 85.56 0.39 3.85 16 15 C -0.10 -2.83 4.59 -19.77 -0.09 -2.92 16 16 C -0.09 -2.39 8.38 22.28 0.19 -2.21 16 17 C -0.05 -1.18 6.32 22.33 0.14 -1.04 16 18 Cl -0.07 -1.40 28.95 -2.72 -0.08 -1.47 16 19 C -0.09 -1.78 9.82 22.28 0.22 -1.56 16 20 C -0.14 -2.83 9.99 22.36 0.22 -2.60 16 21 C 0.13 3.39 6.68 22.50 0.15 3.54 16 22 O -0.50 -14.08 12.74 -92.69 -1.18 -15.26 16 23 H 0.09 3.25 7.84 -2.91 -0.02 3.23 16 24 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 25 H 0.11 3.61 6.84 -2.91 -0.02 3.59 16 26 H 0.06 2.54 7.01 -2.39 -0.02 2.53 16 27 H 0.08 2.75 6.35 -2.38 -0.02 2.73 16 28 H -0.02 -0.90 6.68 -2.39 -0.02 -0.92 16 29 H 0.00 -0.18 7.83 -2.38 -0.02 -0.20 16 30 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 31 H 0.07 2.57 7.58 -2.39 -0.02 2.56 16 32 H 0.04 1.32 6.27 -2.39 -0.01 1.30 16 33 H 0.13 3.31 8.03 -2.91 -0.02 3.29 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 36 H 0.40 7.35 9.06 -74.06 -0.67 6.68 16 Total: -1.00 -66.49 320.16 1.16 -65.33 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.42 Total: 14.26 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 3.92 Total: -27.41 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.95 Total: -82.42 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -1.18 Total: -15.26 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.47 kcal Total: -66.49 1.16 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814171794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds