Wall clock time and date at job start Tue Mar 31 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 120.00345 * 2 1 4 4 N 1.46896 * 109.47034 * 124.17234 * 3 2 1 5 5 C 1.46901 * 110.99851 * 196.03354 * 4 3 2 6 6 C 1.50699 * 109.47004 * 66.04683 * 5 4 3 7 7 H 1.08000 * 120.00272 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99959 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00297 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00206 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46810 * 60.00284 * 10 8 6 12 12 H 1.48499 * 109.47125 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47172 * 300.00380 * 10 8 6 14 14 C 1.46895 * 111.00293 * 72.07897 * 4 3 2 15 15 C 1.50697 * 109.47659 * 200.31330 * 14 4 3 16 16 C 1.38163 * 119.96854 * 83.86002 * 15 14 4 17 17 C 1.38721 * 119.97068 * 180.02562 * 16 15 14 18 18 O 1.35903 * 120.04743 * 179.97438 * 17 16 15 19 19 C 1.38732 * 119.90583 * 359.97438 * 17 16 15 20 20 C 1.38240 * 119.92488 * 0.02562 * 19 17 16 21 21 Cl 1.73607 * 119.98159 * 179.97438 * 20 19 17 22 22 C 1.38231 * 119.96188 * 263.59084 * 15 14 4 23 23 H 1.08004 * 120.00055 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.00198 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00291 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.46720 * 4.17256 * 3 2 1 27 27 H 1.08994 * 109.47104 * 244.17187 * 3 2 1 28 28 H 1.09000 * 109.47338 * 306.04482 * 5 4 3 29 29 H 1.09005 * 109.46961 * 186.04273 * 5 4 3 30 30 H 0.97003 * 120.00797 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47240 * 320.31203 * 14 4 3 32 32 H 1.09003 * 109.47120 * 80.30727 * 14 4 3 33 33 H 1.08000 * 120.01420 * 359.97438 * 16 15 14 34 34 H 0.96703 * 114.00197 * 89.99854 * 18 17 16 35 35 H 1.07988 * 120.03854 * 179.97438 * 19 17 16 36 36 H 1.07997 * 119.94959 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9820 1.3401 1.1458 5 6 3.4475 2.7090 1.4057 6 6 2.2854 3.5586 1.8517 7 1 1.2996 3.1251 1.9334 8 6 2.4807 4.8892 2.1553 9 7 3.6811 5.4172 2.0553 10 14 1.0402 5.9425 2.7074 11 1 0.4578 5.3730 3.9490 12 1 1.5108 7.3262 2.9702 13 1 0.0067 5.9657 1.6412 14 6 4.1156 0.4288 0.9400 15 6 4.7471 0.1042 2.2692 16 6 4.2217 -0.9033 3.0552 17 6 4.8026 -1.2018 4.2790 18 8 4.2868 -2.1922 5.0537 19 6 5.9110 -0.4880 4.7111 20 6 6.4333 0.5192 3.9213 21 17 7.8198 1.4139 4.4608 22 6 5.8549 0.8110 2.6982 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3575 2.1323 0.0748 27 1 2.6329 1.3959 -0.9250 28 1 3.8744 3.1269 0.4940 29 1 4.2066 2.6923 2.1879 30 1 3.8185 6.3535 2.2686 31 1 3.7628 -0.4899 0.4714 32 1 4.8528 0.9060 0.2943 33 1 3.3585 -1.4576 2.7174 34 1 4.6683 -3.0642 4.8831 35 1 6.3647 -0.7183 5.6636 36 1 6.2663 1.5955 2.0805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894583932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:47 Heat of formation + Delta-G solvation = -1.929255 kcal Electronic energy + Delta-G solvation = -19480.175626 eV Core-core repulsion = 16376.893644 eV Total energy + Delta-G solvation = -3103.281982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73878 -37.53117 -36.76413 -35.78321 -33.23399 -32.52440 -30.88224 -29.59472 -27.41129 -26.04023 -23.92514 -22.50073 -21.68496 -20.44806 -19.16185 -17.98503 -16.46405 -16.31418 -15.85135 -15.44077 -15.09660 -14.70955 -14.28815 -14.09244 -13.72713 -13.37819 -12.89617 -12.50672 -12.34447 -12.05159 -11.79846 -11.63685 -11.36009 -11.20488 -10.97521 -10.79257 -10.71711 -10.65204 -10.47111 -10.25719 -9.88686 -9.25311 -8.96924 -8.53691 -8.46172 -8.38129 -7.32484 -6.02601 -4.03648 1.32097 1.35708 2.27999 2.69318 3.33884 3.38249 3.41406 3.66513 4.23275 4.43699 4.89125 5.10598 5.23438 5.29533 5.33063 5.42117 5.49484 5.55272 5.64997 5.80132 5.96870 5.98517 6.14050 6.22873 6.35175 6.43714 6.51051 6.74531 6.79897 6.99168 7.20486 7.26388 7.27928 7.66686 7.77775 8.04517 8.14671 8.49932 9.02856 9.60294 11.08107 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011703 B = 0.006322 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.054139 B = 4428.015044 C = 5903.632764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.526 5.526 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.087 3.913 15 C -0.029 4.029 16 C -0.118 4.118 17 C 0.109 3.891 18 O -0.494 6.494 19 C -0.146 4.146 20 C -0.017 4.017 21 Cl -0.073 7.073 22 C -0.101 4.101 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.030 0.970 28 H -0.009 1.009 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.132 0.868 34 H 0.386 0.614 35 H 0.133 0.867 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 -14.347 -0.252 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.153 4.153 3 C -0.044 4.044 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.548 4.548 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.041 4.041 15 C -0.030 4.030 16 C -0.137 4.137 17 C 0.065 3.935 18 O -0.304 6.304 19 C -0.165 4.165 20 C -0.044 4.044 21 Cl -0.044 7.044 22 C -0.121 4.121 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.048 0.952 28 H 0.009 0.991 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.241 0.759 35 H 0.151 0.849 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.938 -13.769 0.462 14.328 hybrid contribution 0.118 0.697 -0.319 0.776 sum 4.056 -13.071 0.143 13.687 Atomic orbital electron populations 1.23712 0.95980 1.01265 1.02681 1.22982 0.95921 0.98365 0.98001 1.21200 0.96119 0.95609 0.91472 1.62157 1.14104 1.11238 1.37545 1.19825 0.96546 0.81354 0.95673 1.21090 0.95037 0.93765 1.44862 0.91932 1.24956 0.95795 0.97933 0.95705 1.69935 1.20971 1.13560 1.49100 0.86600 0.82526 0.79238 0.79310 1.20154 1.21343 1.20288 1.21059 0.93591 0.97826 0.91626 1.19636 0.93040 0.93446 0.96902 1.21296 1.00015 0.99306 0.93068 1.18175 0.92861 0.92260 0.90217 1.84875 1.65141 1.18885 1.61456 1.21134 0.97074 0.97691 1.00651 1.20600 0.92091 0.96024 0.95640 1.98360 1.41368 1.74643 1.90013 1.21075 0.96267 0.99622 0.95089 0.88561 0.89262 0.88427 0.88795 0.95211 0.99127 0.94477 0.92862 0.90766 0.94168 0.85009 0.75874 0.84913 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.85 14.32 29.02 0.42 -2.43 16 2 C -0.13 -2.06 9.26 -36.02 -0.33 -2.40 16 3 C 0.08 1.55 5.25 -4.97 -0.03 1.52 16 4 N -0.53 -10.83 4.36 -238.97 -1.04 -11.87 16 5 C 0.19 4.81 4.54 -4.98 -0.02 4.79 16 6 C -0.51 -14.14 8.28 -34.44 -0.29 -14.43 16 7 H 0.06 1.73 7.26 -52.49 -0.38 1.35 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.09 1.47 4.96 -4.98 -0.02 1.44 16 15 C -0.03 -0.48 5.03 -104.65 -0.53 -1.01 16 16 C -0.12 -1.79 9.66 -39.43 -0.38 -2.17 16 17 C 0.11 1.57 6.70 -39.22 -0.26 1.31 16 18 O -0.49 -6.07 13.50 -19.44 -0.26 -6.33 16 19 C -0.15 -2.12 9.77 -39.40 -0.38 -2.50 16 20 C -0.02 -0.27 6.32 -39.52 -0.25 -0.52 16 21 Cl -0.07 -1.08 28.95 -51.86 -1.50 -2.58 16 22 C -0.10 -1.72 8.24 -39.52 -0.33 -2.04 16 23 H 0.10 1.43 7.84 -52.48 -0.41 1.02 16 24 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 25 H 0.10 1.32 7.08 -52.48 -0.37 0.95 16 26 H 0.09 1.95 6.23 -51.93 -0.32 1.63 16 27 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.04 1.00 6.43 -51.93 -0.33 0.67 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.06 6.53 -51.93 -0.34 0.72 16 32 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.39 2.55 9.06 45.56 0.41 2.96 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.14 2.35 8.02 -52.49 -0.42 1.93 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -30.95 323.74 -8.54 -39.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.82 Total: 2.30 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.50 Total: -16.91 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.30 Total: -37.59 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.26 Total: -6.33 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.95 -8.54 -39.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894583932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.556 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds