Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47403 * 2 1 4 4 C 1.34777 * 119.99821 * 276.69734 * 3 2 1 5 5 O 1.21638 * 120.00122 * 176.21972 * 4 3 2 6 6 C 1.47267 * 119.99873 * 356.21920 * 4 3 2 7 7 C 1.35207 * 123.13891 * 186.28909 * 6 4 3 8 8 S 1.70942 * 108.82559 * 179.87105 * 7 6 4 9 9 C 1.70772 * 91.13079 * 0.33141 * 8 7 6 10 10 N 1.28650 * 110.55562 * 359.80333 * 9 8 7 11 11 C 1.46495 * 120.00384 * 96.69249 * 3 2 1 12 12 C 1.53943 * 113.74489 * 141.26094 * 11 3 2 13 13 N 1.47817 * 86.03622 * 90.88449 * 12 11 3 14 14 C 1.36933 * 134.45797 * 204.64616 * 13 12 11 15 15 H 1.07999 * 120.00223 * 174.54203 * 14 13 12 16 16 C 1.38816 * 119.99871 * 354.54251 * 14 13 12 17 17 N 1.31619 * 120.00124 * 4.97472 * 16 14 13 18 18 Si 1.86796 * 120.00141 * 184.98468 * 16 14 13 19 19 H 1.48500 * 109.47539 * 94.99474 * 18 16 14 20 20 H 1.48497 * 109.47371 * 214.99793 * 18 16 14 21 21 H 1.48508 * 109.47065 * 334.99635 * 18 16 14 22 22 C 1.47580 * 91.04993 * 24.54935 * 13 12 11 23 23 H 1.09002 * 109.47286 * 300.00652 * 1 2 3 24 24 H 1.09003 * 109.47076 * 60.00022 * 1 2 3 25 25 H 1.08994 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47561 * 240.00023 * 2 1 3 27 27 H 1.09003 * 109.47076 * 119.99978 * 2 1 3 28 28 H 1.08001 * 125.59046 * 0.02562 * 7 6 4 29 29 H 1.07995 * 124.71896 * 179.84110 * 9 8 7 30 30 H 1.09002 * 112.94588 * 9.66631 * 11 3 2 31 31 H 1.09002 * 113.77152 * 205.14863 * 12 11 3 32 32 H 1.09003 * 113.76688 * 336.54630 * 12 11 3 33 33 H 0.97001 * 120.00320 * 180.02562 * 17 16 14 34 34 H 1.08996 * 113.77118 * 221.14783 * 22 13 12 35 35 H 1.09001 * 113.76732 * 89.75634 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1147 2.0619 -1.1593 5 8 2.4544 3.2298 -1.1524 6 6 1.8086 1.3916 -2.4343 7 6 2.0016 1.9726 -3.6398 8 16 1.5314 0.8749 -4.8629 9 6 1.0954 -0.2922 -3.6949 10 7 1.3093 0.1550 -2.5078 11 6 2.4020 2.0226 1.2600 12 6 3.6469 2.9207 1.1445 13 7 2.7015 4.0182 0.8501 14 6 2.7935 5.2101 0.1822 15 1 1.9106 5.8128 0.0290 16 6 4.0218 5.6436 -0.2979 17 7 5.0790 4.8659 -0.1982 18 14 4.1742 7.3307 -1.0851 19 1 4.6245 8.3133 -0.0668 20 1 5.1647 7.2737 -2.1900 21 1 2.8544 7.7463 -1.6244 22 6 1.6185 3.3127 1.5625 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.3914 2.9665 -3.8033 29 1 0.6964 -1.2698 -3.9214 30 1 2.4398 1.3257 2.0973 31 1 4.1869 3.0460 2.0830 32 1 4.2978 2.6639 0.3087 33 1 5.9373 5.1690 -0.5334 34 1 0.6529 3.3685 1.0599 35 1 1.5613 3.5534 2.6240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949776536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = 127.877130 kcal Electronic energy + Delta-G solvation = -20933.839150 eV Core-core repulsion = 17870.522453 eV Total energy + Delta-G solvation = -3063.316697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34992 -38.77913 -36.09549 -34.81801 -31.75612 -30.30660 -29.50623 -27.27703 -25.77834 -24.58779 -23.49665 -22.73706 -21.53554 -19.56329 -18.79906 -17.09086 -16.57084 -16.07308 -15.67120 -14.87187 -14.68318 -14.41519 -13.78570 -13.63976 -13.38295 -13.32029 -13.06265 -12.64937 -12.38235 -11.89491 -11.76712 -11.30160 -11.07177 -11.03433 -10.80093 -10.65674 -10.39642 -9.96818 -9.59977 -9.56860 -9.31745 -9.24367 -8.87361 -8.73152 -8.25839 -7.66050 -6.32799 -5.40126 -2.64240 0.76032 1.40301 1.75871 2.41703 3.56097 3.60865 3.62574 3.71428 4.15444 4.31817 4.73909 5.13239 5.33059 5.45131 5.49488 5.58078 5.64235 5.79826 5.85807 5.91877 5.94538 6.12223 6.14793 6.40391 6.49059 6.68662 6.71377 6.74113 7.14118 7.44162 7.56037 7.68490 7.89606 8.26401 8.31779 9.26074 9.37848 10.08407 10.96549 11.79550 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.007429 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.717137 B = 3767.879357 C = 4992.116731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.589 5.589 4 C 0.545 3.455 5 O -0.404 6.404 6 C 0.020 3.980 7 C -0.220 4.220 8 S 0.174 5.826 9 C -0.017 4.017 10 N -0.431 5.431 11 C 0.094 3.906 12 C 0.160 3.840 13 N -0.581 5.581 14 C -0.164 4.164 15 H 0.068 0.932 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.897 3.103 19 H -0.296 1.296 20 H -0.296 1.296 21 H -0.286 1.286 22 C 0.104 3.896 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.188 0.812 29 H 0.198 0.802 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.037 0.963 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 -14.578 -6.002 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.324 5.324 4 C 0.325 3.675 5 O -0.269 6.269 6 C -0.114 4.114 7 C -0.362 4.362 8 S 0.427 5.573 9 C -0.316 4.316 10 N -0.147 5.147 11 C -0.011 4.011 12 C 0.034 3.966 13 N -0.306 5.306 14 C -0.292 4.292 15 H 0.086 0.914 16 C -0.204 4.204 17 N -0.574 5.574 18 Si 0.730 3.270 19 H -0.224 1.224 20 H -0.223 1.223 21 H -0.211 1.211 22 C -0.024 4.024 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.077 0.923 28 H 0.205 0.795 29 H 0.215 0.785 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.423 -13.945 -6.799 17.653 hybrid contribution 0.216 1.212 0.381 1.289 sum -8.207 -12.733 -6.419 16.452 Atomic orbital electron populations 1.22026 0.96885 1.00700 1.01325 1.21823 0.94033 0.82952 1.02906 1.47284 1.66122 1.13445 1.05590 1.17487 0.81142 0.87126 0.81739 1.91526 1.39309 1.11883 1.84133 1.21223 1.03468 0.90300 0.96399 1.26596 1.07101 1.06884 0.95578 1.82747 1.55948 1.06239 1.12331 1.28557 1.06171 1.05424 0.91430 1.67415 1.13103 1.11356 1.22786 1.23129 0.99890 0.93653 0.84394 1.22480 0.91550 0.84145 0.98471 1.45543 1.06291 1.20041 1.58729 1.18620 0.92958 0.92334 1.25336 0.91423 1.24504 0.95769 0.97713 1.02397 1.69809 0.99232 1.35328 1.53060 0.86295 0.76874 0.85270 0.78608 1.22389 1.22296 1.21150 1.22942 0.93817 0.90366 0.95264 0.93618 0.92749 0.92836 0.87870 0.92261 0.79452 0.78495 0.90369 0.95137 0.90951 0.94623 0.94460 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.66 37.16 0.36 -1.66 16 2 C 0.11 1.57 5.74 -4.04 -0.02 1.55 16 3 N -0.59 -11.20 2.74 -169.23 -0.46 -11.67 16 4 C 0.54 11.72 7.05 -12.59 -0.09 11.63 16 5 O -0.40 -10.64 10.56 5.24 0.06 -10.58 16 6 C 0.02 0.35 6.35 -84.53 -0.54 -0.18 16 7 C -0.22 -3.49 10.62 29.65 0.31 -3.18 16 8 S 0.17 1.85 22.97 -107.50 -2.47 -0.62 16 9 C -0.02 -0.18 12.17 51.43 0.63 0.45 16 10 N -0.43 -6.14 5.32 -12.36 -0.07 -6.21 16 11 C 0.09 1.88 4.72 -70.15 -0.33 1.55 16 12 C 0.16 3.98 6.43 -2.84 -0.02 3.96 16 13 N -0.58 -15.67 2.05 -177.88 -0.36 -16.03 16 14 C -0.16 -4.90 8.38 -15.06 -0.13 -5.03 16 15 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 16 C -0.01 -0.28 5.38 -17.43 -0.09 -0.38 16 17 N -0.92 -29.00 11.48 55.49 0.64 -28.37 16 18 Si 0.90 23.82 29.56 -169.99 -5.02 18.80 16 19 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 20 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 22 C 0.10 2.28 8.35 -2.97 -0.02 2.26 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.82 6.93 -51.93 -0.36 0.46 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 1.53 5.25 -51.93 -0.27 1.26 16 27 H 0.06 0.77 7.85 -51.93 -0.41 0.37 16 28 H 0.19 3.19 8.04 -52.49 -0.42 2.77 16 29 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 2.04 6.72 -51.93 -0.35 1.70 16 33 H 0.24 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -35.23 298.43 -7.44 -42.68 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -4.30 Total: -3.47 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 0.06 Total: 10.97 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.26 Total: -62.27 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.06 Total: -10.58 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.02 Total: 18.80 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.47 Total: -0.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.23 -7.44 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949776536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.553 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds