Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.87185 * 2 1 4 4 C 1.54325 * 109.88411 * 238.98076 * 2 1 3 5 5 H 1.08996 * 110.72055 * 336.77924 * 4 2 1 6 6 N 1.46502 * 110.71950 * 99.86998 * 4 2 1 7 7 C 1.36930 * 120.00159 * 202.56022 * 6 4 2 8 8 H 1.08000 * 119.99841 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00182 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00212 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99941 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00122 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00115 * 11 9 7 15 15 C 1.55154 * 103.10113 * 218.32334 * 4 2 1 16 16 C 1.55117 * 101.48628 * 35.28136 * 15 4 2 17 17 N 1.47026 * 110.01017 * 121.09400 * 2 1 3 18 18 C 1.34769 * 125.65021 * 298.46501 * 17 2 1 19 19 O 1.21636 * 120.00071 * 0.02562 * 18 17 2 20 20 C 1.47103 * 120.00136 * 180.02562 * 18 17 2 21 21 C 1.38391 * 127.99761 * 179.70502 * 20 18 17 22 22 C 1.37577 * 111.25985 * 179.88328 * 21 20 18 23 23 N 1.29551 * 117.94904 * 0.44054 * 22 21 20 24 24 S 1.56308 * 110.38300 * 359.74751 * 23 22 21 25 25 H 1.09007 * 109.46802 * 181.02055 * 1 2 3 26 26 H 1.08996 * 109.47064 * 301.01834 * 1 2 3 27 27 H 1.09000 * 109.46941 * 61.01776 * 1 2 3 28 28 H 0.97008 * 119.99482 * 22.56078 * 6 4 2 29 29 H 0.96993 * 120.00105 * 359.97438 * 10 9 7 30 30 H 1.09004 * 111.00230 * 153.49197 * 15 4 2 31 31 H 1.09004 * 111.00411 * 277.33943 * 15 4 2 32 32 H 1.09004 * 110.41618 * 204.29103 * 16 15 4 33 33 H 1.08998 * 110.20492 * 82.04501 * 16 15 4 34 34 H 1.07997 * 124.36786 * 0.03960 * 21 20 18 35 35 H 1.07998 * 121.02307 * 180.18980 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7479 -1.2437 5 1 1.3051 -1.4434 -1.6204 6 7 2.4521 0.1991 -2.2886 7 6 2.5021 -0.2052 -3.5959 8 1 2.2484 -1.2221 -3.8568 9 6 2.8779 0.6921 -4.5861 10 7 3.1866 1.9315 -4.2682 11 14 2.9469 0.1404 -6.3694 12 1 1.6268 0.3695 -7.0099 13 1 3.2811 -1.3054 -6.4277 14 1 3.9875 0.9184 -7.0884 15 6 3.2894 -1.5136 -0.6987 16 6 2.8196 -1.8768 0.7343 17 7 2.0331 -0.7135 1.1830 18 6 1.8115 -0.3625 2.4652 19 8 1.1432 0.6215 2.7195 20 6 2.3777 -1.1693 3.5571 21 6 2.2608 -0.9601 4.9201 22 6 2.9274 -1.9300 5.6326 23 7 3.5483 -2.8527 4.9682 24 16 3.3729 -2.6284 3.4313 25 1 -0.3633 -1.0276 0.0183 26 1 -0.3633 0.5295 0.8807 27 1 -0.3633 0.4979 -0.8990 28 1 2.6796 1.1125 -2.0543 29 1 3.1512 2.2179 -3.3422 30 1 3.4847 -2.4096 -1.2879 31 1 4.1675 -0.8684 -0.6689 32 1 3.6780 -2.0297 1.3886 33 1 2.1957 -2.7703 0.7108 34 1 1.7145 -0.1426 5.3667 35 1 2.9361 -1.9201 6.7125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986338922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = 30.411638 kcal Electronic energy + Delta-G solvation = -19703.156266 eV Core-core repulsion = 16635.613148 eV Total energy + Delta-G solvation = -3067.543118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23853 -39.29984 -37.47551 -34.53260 -32.37539 -31.33995 -30.93403 -29.06771 -26.17914 -25.21290 -23.36046 -23.07450 -21.50813 -20.13770 -19.37682 -18.32742 -17.47472 -16.82616 -16.30094 -15.65339 -15.15021 -14.86127 -14.39640 -14.10319 -13.79931 -13.62939 -13.44406 -13.05021 -12.92806 -12.46954 -12.19535 -11.91780 -11.47874 -11.35362 -11.06644 -10.86866 -10.66426 -10.51149 -10.30408 -10.07612 -10.00137 -9.90007 -9.27677 -9.08705 -8.99447 -8.64551 -7.17162 -6.19338 -3.21989 0.10423 1.06658 1.67962 2.01448 2.81802 3.02263 3.47598 3.51733 3.65820 4.25873 4.58408 4.73916 4.75685 4.83524 5.04160 5.12282 5.29376 5.35064 5.44968 5.57770 5.57951 5.59796 5.76140 5.86126 5.90890 6.11060 6.26413 6.27736 6.41010 6.45587 6.51751 6.73673 7.44429 7.71162 8.02776 8.65537 9.08968 9.95674 10.08769 11.28418 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035422 B = 0.003994 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.285585 B = 7008.990809 C = 7467.233142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.079 0.921 4 C 0.182 3.818 5 H 0.071 0.929 6 N -0.725 5.725 7 C -0.338 4.338 8 H 0.068 0.932 9 C -0.040 4.040 10 N -0.940 5.940 11 Si 1.083 2.917 12 H -0.295 1.295 13 H -0.294 1.294 14 H -0.288 1.288 15 C -0.151 4.151 16 C 0.089 3.911 17 N -0.601 5.601 18 C 0.606 3.394 19 O -0.526 6.526 20 C -0.260 4.260 21 C -0.115 4.115 22 C 0.059 3.941 23 N -0.539 5.539 24 S 0.430 5.570 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.369 0.631 29 H 0.256 0.744 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -9.752 16.118 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.097 0.903 4 C 0.070 3.930 5 H 0.088 0.912 6 N -0.366 5.366 7 C -0.468 4.468 8 H 0.086 0.914 9 C -0.238 4.238 10 N -0.584 5.584 11 Si 0.914 3.086 12 H -0.222 1.222 13 H -0.220 1.220 14 H -0.214 1.214 15 C -0.192 4.192 16 C -0.037 4.037 17 N -0.335 5.335 18 C 0.393 3.607 19 O -0.403 6.403 20 C -0.394 4.394 21 C -0.151 4.151 22 C -0.134 4.134 23 N -0.367 5.367 24 S 0.586 5.414 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.203 0.797 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.192 0.808 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.106 -10.633 13.949 17.540 hybrid contribution -1.052 1.007 2.824 3.177 sum -1.158 -9.626 16.773 19.374 Atomic orbital electron populations 1.22056 0.94406 1.01919 1.02948 1.22009 0.94786 0.96843 0.83906 0.90292 1.21189 0.93592 0.91474 0.86730 0.91153 1.42356 1.81405 1.09694 1.03172 1.20033 1.44617 0.98009 0.84162 0.91425 1.25802 0.99224 0.94404 1.04385 1.70854 1.50899 1.16792 1.19869 0.83196 0.76508 0.74273 0.74672 1.22225 1.22047 1.21363 1.23604 1.01480 1.02159 0.91972 1.22672 0.94528 0.88814 0.97654 1.48394 1.51558 1.28794 1.04715 1.16331 0.80431 0.83692 0.80279 1.90813 1.39833 1.26749 1.82938 1.26884 1.09349 1.04889 0.98275 1.22110 1.00727 1.01068 0.91191 1.22228 0.97214 0.91095 1.02832 1.72138 1.25940 1.29086 1.09580 1.82112 1.38981 1.16890 1.03435 0.92823 0.91810 0.90889 0.79690 0.93232 0.89869 0.90469 0.91392 0.90525 0.80822 0.80358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.10 37.16 0.34 -2.13 16 2 C 0.13 2.15 3.21 -66.95 -0.21 1.94 16 3 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 4 C 0.18 3.32 3.12 -66.10 -0.21 3.11 16 5 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 6 N -0.72 -16.88 5.23 -51.65 -0.27 -17.15 16 7 C -0.34 -8.88 9.97 -15.06 -0.15 -9.03 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C -0.04 -1.11 5.50 -17.43 -0.10 -1.20 16 10 N -0.94 -28.09 13.70 55.49 0.76 -27.33 16 11 Si 1.08 24.90 29.92 -169.99 -5.09 19.82 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C -0.15 -2.32 6.79 -24.47 -0.17 -2.48 16 16 C 0.09 1.11 5.73 -2.42 -0.01 1.09 16 17 N -0.60 -8.98 3.07 -164.26 -0.50 -9.49 16 18 C 0.61 9.36 7.63 -12.67 -0.10 9.26 16 19 O -0.53 -9.62 16.01 5.25 0.08 -9.54 16 20 C -0.26 -3.26 6.63 -35.93 -0.24 -3.50 16 21 C -0.12 -1.21 10.40 -39.77 -0.41 -1.63 16 22 C 0.06 0.56 11.14 -18.75 -0.21 0.35 16 23 N -0.54 -6.11 11.29 21.63 0.24 -5.87 16 24 S 0.43 4.57 19.34 -107.50 -2.08 2.49 16 25 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.37 9.05 6.37 -40.82 -0.26 8.79 16 29 H 0.26 7.56 6.77 -40.82 -0.28 7.28 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.75 5.12 -32.75 -0.17 0.58 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -31.77 304.42 -7.76 -39.53 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.03 Total: 7.17 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.47 Total: -4.22 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.23 Total: -59.84 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.82 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -2.08 Total: 2.49 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.77 -7.76 -39.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986338922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.944 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds