Wall clock time and date at job start Tue Mar 31 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99942 * 2 1 4 4 C 1.54324 * 109.87999 * 121.09560 * 2 1 3 5 5 H 1.09000 * 110.71874 * 260.14726 * 4 2 1 6 6 N 1.46496 * 110.72137 * 23.24838 * 4 2 1 7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55159 * 103.09883 * 141.69766 * 4 2 1 16 16 C 1.54913 * 101.58256 * 324.40964 * 15 4 2 17 17 N 1.47424 * 104.83373 * 37.00666 * 16 15 4 18 18 C 1.34777 * 125.64751 * 155.91265 * 17 16 15 19 19 O 1.21574 * 119.99711 * 179.97438 * 18 17 16 20 20 C 1.47690 * 119.99820 * 359.97438 * 18 17 16 21 21 C 1.39494 * 122.10170 * 179.97438 * 20 18 17 22 22 C 1.34999 * 111.68408 * 180.02562 * 21 20 18 23 23 S 1.71761 * 105.45052 * 359.97438 * 22 21 20 24 24 N 1.30607 * 122.10777 * 359.71457 * 20 18 17 25 25 H 1.08998 * 109.46878 * 298.90559 * 1 2 3 26 26 H 1.09002 * 109.47576 * 58.90168 * 1 2 3 27 27 H 1.08995 * 109.47363 * 178.90733 * 1 2 3 28 28 H 0.96996 * 120.00499 * 22.55496 * 6 4 2 29 29 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 30 30 H 1.08997 * 111.00352 * 82.48071 * 15 4 2 31 31 H 1.09001 * 111.00328 * 206.29568 * 15 4 2 32 32 H 1.09004 * 110.36493 * 155.85234 * 16 15 4 33 33 H 1.08997 * 110.36203 * 278.17112 * 16 15 4 34 34 H 1.07992 * 124.15355 * 0.03531 * 21 20 18 35 35 H 1.07997 * 127.27375 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3500 -0.0461 2.0212 6 7 1.0471 -1.6855 1.7474 7 6 1.0905 -2.1006 3.0517 8 1 1.8678 -1.7382 3.7081 9 6 0.1355 -2.9870 3.5301 10 7 -0.8116 -3.4290 2.7299 11 14 0.1951 -3.5537 5.3090 12 1 -0.9276 -4.4906 5.5680 13 1 1.4850 -4.2430 5.5660 14 1 0.0748 -2.3775 6.2075 15 6 3.2896 -1.5141 0.6968 16 6 2.8200 -1.8831 -0.7326 17 7 2.0351 -0.7198 -1.1841 18 6 1.8148 -0.3711 -2.4672 19 8 1.1486 0.6130 -2.7238 20 6 2.3826 -1.1844 -3.5614 21 6 2.1818 -0.8642 -4.9041 22 6 2.7922 -1.7463 -5.7239 23 16 3.5537 -2.8838 -4.6865 24 7 3.1084 -2.2459 -3.3327 25 1 -0.3633 0.4967 0.8996 26 1 -0.3634 0.5308 -0.8800 27 1 -0.3634 -1.0274 -0.0196 28 1 0.3492 -2.0112 1.1578 29 1 -1.4787 -4.0488 3.0642 30 1 4.1667 -0.8678 0.6652 31 1 3.4874 -2.4090 1.2870 32 1 3.6788 -2.0381 -1.3858 33 1 2.1951 -2.7758 -0.7078 34 1 1.6087 -0.0151 -5.2458 35 1 2.7999 -1.7383 -6.8038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:45 Heat of formation + Delta-G solvation = 39.665781 kcal Electronic energy + Delta-G solvation = -20044.794482 eV Core-core repulsion = 16977.652654 eV Total energy + Delta-G solvation = -3067.141828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51330 -38.78105 -37.15876 -33.98321 -32.04515 -31.18836 -30.73200 -28.92469 -26.37498 -25.12874 -23.56332 -22.69815 -21.12200 -19.58618 -18.83198 -18.41604 -17.42314 -16.82490 -16.10065 -15.34961 -14.95978 -14.32758 -14.13671 -13.74886 -13.60916 -13.41041 -13.17870 -12.80218 -12.58630 -12.22496 -11.70687 -11.54217 -11.30522 -11.08822 -10.94681 -10.85837 -10.59660 -10.53122 -10.20567 -10.02158 -9.98484 -9.62629 -9.57945 -8.95116 -8.92280 -8.25463 -7.00375 -5.79764 -3.09286 0.49719 1.33120 1.71270 1.75158 3.22377 3.39304 3.42533 3.47357 3.48174 4.53975 4.56344 4.77335 5.15475 5.19649 5.30319 5.43183 5.53236 5.65235 5.66061 5.74544 5.83079 5.93156 6.08924 6.18858 6.34123 6.40885 6.48533 6.59270 6.64954 6.81842 6.88707 7.03664 7.67539 7.81417 8.32518 8.38700 9.50020 10.05636 10.40820 11.42512 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027402 B = 0.004434 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.577851 B = 6313.338883 C = 6723.585222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.074 0.926 4 C 0.171 3.829 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.292 1.292 13 H -0.286 1.286 14 H -0.286 1.286 15 C -0.161 4.161 16 C 0.110 3.890 17 N -0.587 5.587 18 C 0.598 3.402 19 O -0.539 6.539 20 C 0.058 3.942 21 C -0.134 4.134 22 C -0.284 4.284 23 S 0.445 5.555 24 N -0.505 5.505 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.388 0.612 29 H 0.256 0.744 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.769 2.588 -16.117 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.024 3.976 3 H 0.092 0.908 4 C 0.059 3.941 5 H 0.087 0.913 6 N -0.356 5.356 7 C -0.375 4.375 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.218 1.218 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.203 4.203 16 C -0.013 4.013 17 N -0.319 5.319 18 C 0.381 3.619 19 O -0.416 6.416 20 C -0.116 4.116 21 C -0.167 4.167 22 C -0.433 4.433 23 S 0.600 5.400 24 N -0.339 5.339 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.188 0.812 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 10.515 1.416 -15.389 18.692 hybrid contribution -1.295 0.946 0.271 1.626 sum 9.220 2.362 -15.118 17.864 Atomic orbital electron populations 1.21921 0.94025 1.03020 1.01796 1.22154 0.95535 0.95575 0.84366 0.90814 1.21208 0.89235 0.91689 0.91938 0.91303 1.42565 1.31006 1.51645 1.10424 1.19195 1.09732 1.21261 0.87267 0.91079 1.24736 0.97738 1.00131 0.97973 1.69657 1.17131 1.36312 1.34807 0.86267 0.76910 0.78213 0.84754 1.21756 1.21269 1.21241 1.23559 0.99038 1.02277 0.95421 1.22504 0.95355 0.87900 0.95492 1.48589 1.50503 1.28508 1.04308 1.16834 0.80591 0.83724 0.80761 1.90769 1.40628 1.27239 1.83007 1.21261 1.00668 0.94629 0.95086 1.21400 1.02467 1.02509 0.90322 1.27150 1.06651 1.02735 1.06789 1.80609 1.43670 1.27103 0.88628 1.72747 1.18879 1.14716 1.27534 0.91228 0.92650 0.91536 0.77508 0.93394 0.92246 0.89440 0.89545 0.91228 0.81183 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.48 37.16 0.32 -2.60 16 2 C 0.13 2.33 3.45 -66.70 -0.23 2.10 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.35 3.46 -66.10 -0.23 3.12 16 5 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 6 N -0.71 -17.24 4.61 -51.65 -0.24 -17.48 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 11 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C -0.16 -2.79 6.77 -24.58 -0.17 -2.96 16 16 C 0.11 1.89 6.00 -2.53 -0.02 1.88 16 17 N -0.59 -10.46 3.08 -163.82 -0.50 -10.97 16 18 C 0.60 10.61 7.64 -12.40 -0.09 10.52 16 19 O -0.54 -10.57 15.72 5.30 0.08 -10.49 16 20 C 0.06 0.86 6.61 -84.06 -0.56 0.31 16 21 C -0.13 -1.59 9.98 -40.26 -0.40 -1.99 16 22 C -0.28 -2.48 11.41 29.58 0.34 -2.15 16 23 S 0.44 4.17 23.20 -107.50 -2.49 1.68 16 24 N -0.50 -6.94 7.89 24.84 0.20 -6.74 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.05 1.06 6.93 -51.93 -0.36 0.70 16 27 H 0.07 1.44 6.21 -51.93 -0.32 1.12 16 28 H 0.39 10.13 5.58 -40.82 -0.23 9.90 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.09 1.36 6.01 -51.93 -0.31 1.05 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.17 1.89 7.99 -52.49 -0.42 1.47 16 35 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -31.11 303.42 -8.11 -39.23 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.14 Total: 8.97 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.29 Total: 1.20 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.18 Total: -62.13 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -2.49 Total: 1.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.11 -8.11 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.894 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds