Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.00201 * 2 1 4 4 C 1.54335 * 109.98854 * 238.96570 * 2 1 3 5 5 C 1.55160 * 103.02101 * 218.66421 * 4 2 1 6 6 H 1.09000 * 111.00437 * 153.37853 * 5 4 2 7 7 N 1.46503 * 111.00475 * 277.23230 * 5 4 2 8 8 C 1.36937 * 119.99932 * 198.64710 * 7 5 4 9 9 H 1.07998 * 120.00153 * 0.02562 * 8 7 5 10 10 C 1.38806 * 119.99827 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99898 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47043 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46951 * 120.00440 * 12 10 8 15 15 H 1.48504 * 109.46763 * 240.00178 * 12 10 8 16 16 C 1.54906 * 101.58136 * 35.30606 * 5 4 2 17 17 N 1.47016 * 109.88379 * 121.09761 * 2 1 3 18 18 C 1.34776 * 125.65093 * 298.39372 * 17 2 1 19 19 O 1.21682 * 119.99547 * 3.30150 * 18 17 2 20 20 C 1.46685 * 120.00127 * 183.30482 * 18 17 2 21 21 C 1.35657 * 126.12753 * 173.52879 * 20 18 17 22 22 N 1.30941 * 114.19043 * 179.97438 * 21 20 18 23 23 C 1.29437 * 117.36586 * 359.97438 * 22 21 20 24 24 S 1.70945 * 110.38613 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.46928 * 300.35871 * 1 2 3 26 26 H 1.09003 * 109.47348 * 60.35565 * 1 2 3 27 27 H 1.08996 * 109.47398 * 180.35749 * 1 2 3 28 28 H 1.08998 * 110.85518 * 100.19764 * 4 2 1 29 29 H 1.09003 * 110.66809 * 337.04412 * 4 2 1 30 30 H 0.97001 * 119.99477 * 18.64886 * 7 5 4 31 31 H 0.97001 * 119.99857 * 179.97438 * 11 10 8 32 32 H 1.08989 * 110.36970 * 204.15107 * 16 5 4 33 33 H 1.09000 * 110.46139 * 81.87635 * 16 5 4 34 34 H 1.08005 * 122.90794 * 0.24412 * 21 20 18 35 35 H 1.08001 * 124.80732 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 3.4806 -2.4156 -1.2793 7 7 4.4699 -0.6562 -0.6466 8 6 5.7188 -1.2116 -0.5635 9 1 5.8314 -2.2852 -0.5316 10 6 6.8403 -0.3947 -0.5213 11 7 6.7032 0.9138 -0.5607 12 14 8.5440 -1.1524 -0.4087 13 1 8.4266 -2.6324 -0.3799 14 1 9.3469 -0.7428 -1.5890 15 1 9.2130 -0.6841 0.8317 16 6 2.8100 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.0918 0.5886 2.7200 20 6 2.4280 -1.1250 3.5540 21 6 2.3909 -0.8110 4.8732 22 7 3.0252 -1.6580 5.6445 23 6 3.5975 -2.6690 5.0736 24 16 3.3541 -2.6143 3.3825 25 1 -0.3633 0.5194 0.8867 26 1 -0.3634 0.5083 -0.8932 27 1 -0.3634 -1.0276 0.0064 28 1 2.3597 -0.0450 -2.0192 29 1 1.3065 -1.4405 -1.6226 30 1 4.3688 0.3081 -0.6755 31 1 7.4869 1.4846 -0.5308 32 1 3.6655 -2.0413 1.3930 33 1 2.1807 -2.7722 0.7132 34 1 1.8787 0.0600 5.2549 35 1 4.1511 -3.4377 5.5923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988262283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = 31.875869 kcal Electronic energy + Delta-G solvation = -20167.842962 eV Core-core repulsion = 17100.363338 eV Total energy + Delta-G solvation = -3067.479624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13487 -39.28540 -37.27446 -34.07397 -32.13023 -31.42301 -29.99426 -28.54489 -26.07982 -25.53477 -23.85779 -22.82592 -20.81251 -19.80288 -19.36665 -18.01473 -17.31718 -16.43007 -16.16879 -15.44878 -14.87340 -14.48851 -14.21944 -13.89907 -13.80262 -13.68783 -13.40928 -12.95292 -12.82453 -12.33201 -12.04944 -11.81854 -11.46886 -11.24196 -11.05534 -10.90686 -10.75997 -10.39307 -10.08566 -9.88869 -9.81905 -9.49718 -9.32445 -9.12689 -8.95379 -8.32190 -7.13294 -5.90091 -3.21342 0.39022 1.34424 1.74089 2.61676 3.16244 3.34702 3.39782 3.42267 3.43170 4.33817 4.45976 4.67780 5.00068 5.10880 5.21733 5.24301 5.39802 5.42267 5.50459 5.58891 5.68966 5.78957 5.88018 6.04306 6.11953 6.14557 6.30898 6.34985 6.46234 6.59727 6.67163 7.57046 7.63977 7.76945 8.26562 8.32098 9.38835 9.92571 10.27068 11.31635 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.007405 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.467276 B = 3780.354401 C = 5127.387171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.075 0.925 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.925 5.925 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.057 3.943 17 N -0.592 5.592 18 C 0.609 3.391 19 O -0.539 6.539 20 C -0.280 4.280 21 C 0.105 3.895 22 N -0.482 5.482 23 C -0.009 4.009 24 S 0.214 5.786 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.257 0.743 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.184 0.816 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -8.390 3.693 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.093 0.907 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.092 0.908 10 C -0.203 4.203 11 N -0.572 5.572 12 Si 0.736 3.264 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.071 4.071 17 N -0.324 5.324 18 C 0.396 3.604 19 O -0.419 6.419 20 C -0.404 4.404 21 C -0.054 4.054 22 N -0.196 5.196 23 C -0.302 4.302 24 S 0.470 5.530 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.221 0.779 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.201 0.799 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.711 -8.617 3.672 13.493 hybrid contribution 0.781 0.655 0.621 1.193 sum -8.930 -7.963 4.292 12.711 Atomic orbital electron populations 1.22148 0.95077 1.01899 1.02728 1.21517 0.93775 0.96757 0.84137 0.90449 1.23060 0.98047 1.00080 0.96391 1.21295 0.87153 0.94695 0.90816 0.90700 1.42365 1.00210 1.05288 1.87171 1.19244 0.83260 0.91852 1.43810 0.90804 1.24778 0.98008 0.95322 1.02225 1.69673 1.28988 1.02142 1.56429 0.86159 0.84639 0.78257 0.77341 1.20344 1.21713 1.21797 1.23715 0.94541 0.87196 1.01630 1.48231 1.51379 1.28453 1.04338 1.16302 0.80506 0.83069 0.80479 1.90781 1.39014 1.28891 1.83164 1.25801 1.11976 1.03427 0.99230 1.22134 0.96757 0.99067 0.87403 1.66313 1.10799 1.03550 1.38896 1.29091 1.02345 1.00500 0.98286 1.84567 1.44317 1.18799 1.05363 0.91328 0.91798 0.92801 0.89454 0.90473 0.77925 0.93336 0.89730 0.91859 0.79898 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 2 C 0.14 2.22 3.47 -66.95 -0.23 1.98 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.14 -1.97 6.05 -24.89 -0.15 -2.12 16 5 C 0.17 2.99 3.69 -65.78 -0.24 2.75 16 6 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 7 N -0.71 -16.22 5.27 -51.35 -0.27 -16.49 16 8 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.93 13.06 55.49 0.72 -26.20 16 12 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 C 0.06 0.91 5.34 -2.53 -0.01 0.90 16 17 N -0.59 -10.10 3.06 -164.54 -0.50 -10.61 16 18 C 0.61 11.19 7.63 -12.85 -0.10 11.09 16 19 O -0.54 -10.96 15.80 5.20 0.08 -10.88 16 20 C -0.28 -4.61 6.39 -37.10 -0.24 -4.85 16 21 C 0.10 1.65 11.10 -18.85 -0.21 1.44 16 22 N -0.48 -7.26 10.51 -15.38 -0.16 -7.42 16 23 C -0.01 -0.11 12.22 51.75 0.63 0.52 16 24 S 0.21 2.89 18.79 -107.50 -2.02 0.87 16 25 H 0.07 1.05 6.77 -51.93 -0.35 0.70 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 30 H 0.39 9.72 7.82 -40.82 -0.32 9.40 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.09 1.48 4.96 -29.21 -0.14 1.34 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.18 2.68 8.06 -52.48 -0.42 2.25 16 35 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -31.16 306.32 -7.17 -38.32 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.15 Total: 8.40 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.46 Total: 3.09 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.21 Total: -60.72 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.02 Total: 0.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.16 -7.17 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988262283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.199 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds