Wall clock time and date at job start Tue Mar 31 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.00201 * 2 1 4 4 C 1.54335 * 109.98854 * 238.96570 * 2 1 3 5 5 C 1.55160 * 103.02101 * 218.66421 * 4 2 1 6 6 H 1.09000 * 111.00437 * 153.37853 * 5 4 2 7 7 N 1.46503 * 111.00475 * 277.23230 * 5 4 2 8 8 C 1.36937 * 119.99932 * 198.64710 * 7 5 4 9 9 H 1.07998 * 120.00153 * 0.02562 * 8 7 5 10 10 C 1.38806 * 119.99827 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00054 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99898 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47043 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46951 * 120.00440 * 12 10 8 15 15 H 1.48504 * 109.46763 * 240.00178 * 12 10 8 16 16 C 1.54906 * 101.58136 * 35.30606 * 5 4 2 17 17 N 1.47016 * 109.88379 * 121.09761 * 2 1 3 18 18 C 1.34776 * 125.65093 * 298.39372 * 17 2 1 19 19 O 1.21682 * 119.99547 * 3.30150 * 18 17 2 20 20 C 1.46685 * 120.00127 * 183.30482 * 18 17 2 21 21 C 1.35657 * 126.12753 * 173.52879 * 20 18 17 22 22 N 1.30941 * 114.19043 * 179.97438 * 21 20 18 23 23 C 1.29437 * 117.36586 * 359.97438 * 22 21 20 24 24 S 1.70945 * 110.38613 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.46928 * 300.35871 * 1 2 3 26 26 H 1.09003 * 109.47348 * 60.35565 * 1 2 3 27 27 H 1.08996 * 109.47398 * 180.35749 * 1 2 3 28 28 H 1.08998 * 110.85518 * 100.19764 * 4 2 1 29 29 H 1.09003 * 110.66809 * 337.04412 * 4 2 1 30 30 H 0.97001 * 119.99477 * 18.64886 * 7 5 4 31 31 H 0.97001 * 119.99857 * 179.97438 * 11 10 8 32 32 H 1.08989 * 110.36970 * 204.15107 * 16 5 4 33 33 H 1.09000 * 110.46139 * 81.87635 * 16 5 4 34 34 H 1.08005 * 122.90794 * 0.24412 * 21 20 18 35 35 H 1.08001 * 124.80732 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5184 -0.6916 6 1 3.4806 -2.4156 -1.2793 7 7 4.4699 -0.6562 -0.6466 8 6 5.7188 -1.2116 -0.5635 9 1 5.8314 -2.2852 -0.5316 10 6 6.8403 -0.3947 -0.5213 11 7 6.7032 0.9138 -0.5607 12 14 8.5440 -1.1524 -0.4087 13 1 8.4266 -2.6324 -0.3799 14 1 9.3469 -0.7428 -1.5890 15 1 9.2130 -0.6841 0.8317 16 6 2.8100 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8075 -0.3621 2.4656 19 8 1.0918 0.5886 2.7200 20 6 2.4280 -1.1250 3.5540 21 6 2.3909 -0.8110 4.8732 22 7 3.0252 -1.6580 5.6445 23 6 3.5975 -2.6690 5.0736 24 16 3.3541 -2.6143 3.3825 25 1 -0.3633 0.5194 0.8867 26 1 -0.3634 0.5083 -0.8932 27 1 -0.3634 -1.0276 0.0064 28 1 2.3597 -0.0450 -2.0192 29 1 1.3065 -1.4405 -1.6226 30 1 4.3688 0.3081 -0.6755 31 1 7.4869 1.4846 -0.5308 32 1 3.6655 -2.0413 1.3930 33 1 2.1807 -2.7722 0.7132 34 1 1.8787 0.0600 5.2549 35 1 4.1511 -3.4377 5.5923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988262283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:58 Heat of formation + Delta-G solvation = 9.979742 kcal Electronic energy + Delta-G solvation = -20168.792450 eV Core-core repulsion = 17100.363338 eV Total energy + Delta-G solvation = -3068.429112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.43305 -40.47458 -38.67848 -35.81422 -33.44546 -33.09017 -31.16700 -30.15603 -27.25828 -26.71360 -25.71390 -24.10285 -22.14948 -21.08126 -20.53287 -19.39649 -19.07275 -17.79009 -17.43987 -16.75128 -16.51125 -15.82332 -15.56062 -15.37434 -15.09780 -14.97362 -14.82655 -14.42208 -14.10923 -13.58873 -13.34430 -13.17489 -12.90968 -12.75181 -12.63588 -12.30723 -12.18090 -12.04126 -11.65472 -11.53982 -11.27671 -10.99904 -10.65046 -10.47282 -10.12532 -9.65397 -8.99311 -7.92750 -5.21887 -0.75176 0.22680 0.63630 1.41010 1.49186 1.50084 1.59349 1.87504 2.12803 2.57136 3.26144 3.37741 3.48142 3.81036 3.85023 3.91249 4.09743 4.17393 4.32570 4.34823 4.44294 4.64177 4.69302 4.72431 4.89932 5.00359 5.08284 5.16821 5.19958 5.33701 5.44500 5.57781 6.27717 6.38330 6.57482 6.95833 7.34992 8.08798 8.30718 9.30724 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.007405 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.467276 B = 3780.354401 C = 5127.387171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 H 0.045 0.955 4 C -0.121 4.121 5 C 0.162 3.838 6 H 0.095 0.905 7 N -0.726 5.726 8 C -0.232 4.232 9 H 0.090 0.910 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.964 3.036 13 H -0.255 1.255 14 H -0.299 1.299 15 H -0.303 1.303 16 C 0.061 3.939 17 N -0.595 5.595 18 C 0.600 3.400 19 O -0.573 6.573 20 C -0.317 4.317 21 C 0.104 3.896 22 N -0.504 5.504 23 C 0.008 3.992 24 S 0.245 5.755 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.370 0.630 31 H 0.247 0.753 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.182 0.818 35 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 -11.508 3.496 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.063 0.937 4 C -0.159 4.159 5 C 0.051 3.949 6 H 0.113 0.887 7 N -0.364 5.364 8 C -0.363 4.363 9 H 0.108 0.892 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.794 3.206 13 H -0.179 1.179 14 H -0.227 1.227 15 H -0.231 1.231 16 C -0.065 4.065 17 N -0.326 5.326 18 C 0.389 3.611 19 O -0.455 6.455 20 C -0.441 4.441 21 C -0.055 4.055 22 N -0.218 5.218 23 C -0.284 4.284 24 S 0.501 5.499 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.201 0.799 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.199 0.801 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.182 -11.821 3.450 15.978 hybrid contribution 0.857 1.534 0.713 1.896 sum -9.325 -10.287 4.162 14.495 Atomic orbital electron populations 1.22044 0.93034 1.02933 1.02643 1.21630 0.95383 0.95362 0.84479 0.93703 1.23010 0.97487 1.00148 0.95297 1.21639 0.86303 0.94919 0.92021 0.88683 1.42580 1.01323 1.05129 1.87347 1.19711 0.84173 0.92452 1.39988 0.89210 1.25525 1.01514 0.95687 1.04052 1.69839 1.29068 1.03558 1.59703 0.85207 0.80593 0.78717 0.76106 1.17851 1.22658 1.23111 1.23689 0.94811 0.88068 0.99953 1.48356 1.51153 1.28774 1.04308 1.16638 0.80309 0.82919 0.81258 1.90745 1.40631 1.30406 1.83767 1.25743 1.14003 1.05480 0.98910 1.22244 0.96482 0.99263 0.87500 1.66378 1.11958 1.04448 1.39044 1.29811 1.00505 1.00034 0.98076 1.84302 1.43207 1.16554 1.05789 0.93777 0.89561 0.91042 0.90032 0.86451 0.79852 0.94423 0.91037 0.88025 0.80070 0.74391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.11 71.98 0.66 -3.11 16 2 C 0.13 4.12 3.47 45.35 0.16 4.28 16 3 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -3.17 6.05 31.79 0.19 -2.98 16 5 C 0.16 5.18 3.69 46.38 0.17 5.35 16 6 H 0.10 2.72 8.13 -2.39 -0.02 2.70 16 7 N -0.73 -32.62 5.27 -316.37 -1.67 -34.29 16 8 C -0.23 -11.52 9.98 84.03 0.84 -10.68 16 9 H 0.09 4.10 7.83 -2.91 -0.02 4.08 16 10 C -0.08 -4.11 5.50 84.86 0.47 -3.64 16 11 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 12 Si 0.96 43.79 29.55 68.60 2.03 45.82 16 13 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 14 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 15 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 16 C 0.06 1.81 5.34 86.85 0.46 2.27 16 17 N -0.59 -19.82 3.06 -792.70 -2.43 -22.25 16 18 C 0.60 22.26 7.63 86.45 0.66 22.92 16 19 O -0.57 -24.20 15.80 -4.29 -0.07 -24.27 16 20 C -0.32 -10.31 6.39 23.88 0.15 -10.16 16 21 C 0.10 3.27 11.10 84.23 0.93 4.20 16 22 N -0.50 -14.43 10.51 -202.57 -2.13 -16.56 16 23 C 0.01 0.19 12.22 130.60 1.60 1.78 16 24 S 0.24 6.04 18.79 -56.49 -1.06 4.98 16 25 H 0.04 1.34 6.77 -2.39 -0.02 1.33 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.12 2.18 7.85 -2.39 -0.02 2.17 16 30 H 0.37 18.96 7.82 -92.71 -0.72 18.23 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.07 2.34 4.96 -16.84 -0.08 2.26 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.18 5.50 8.06 -2.91 -0.02 5.48 16 35 H 0.24 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -69.56 306.32 1.57 -68.00 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.32 Total: 26.09 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 6.29 Total: 10.23 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -5.94 Total: -130.85 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.06 Total: 4.98 kcal Total: -69.56 1.57 -68.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988262283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.977 kcal (2) G-P(sol) polarization free energy of solvation -69.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds