Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.41349 * 2 1 4 4 C 1.54910 * 110.36692 * 122.29698 * 2 1 3 5 5 C 1.55160 * 101.58122 * 155.84897 * 4 2 1 6 6 H 1.09002 * 110.71871 * 82.86501 * 5 4 2 7 7 N 1.46502 * 110.72023 * 206.13218 * 5 4 2 8 8 C 1.36930 * 120.00089 * 199.97605 * 7 5 4 9 9 H 1.08003 * 120.00345 * 0.02562 * 8 7 5 10 10 C 1.38817 * 120.00051 * 179.97438 * 8 7 5 11 11 N 1.31617 * 119.99647 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00024 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47133 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47099 * 120.00084 * 12 10 8 15 15 H 1.48494 * 109.47154 * 240.00254 * 12 10 8 16 16 C 1.54316 * 102.94268 * 324.49825 * 5 4 2 17 17 N 1.47026 * 107.27365 * 22.19228 * 16 5 4 18 18 C 1.34771 * 125.65100 * 180.79395 * 17 16 5 19 19 O 1.21631 * 119.99944 * 180.02562 * 18 17 16 20 20 C 1.47104 * 120.00017 * 0.02649 * 18 17 16 21 21 C 1.38383 * 127.99527 * 179.70203 * 20 18 17 22 22 C 1.37577 * 111.25939 * 179.82256 * 21 20 18 23 23 N 1.29563 * 117.95105 * 0.51168 * 22 21 20 24 24 S 1.56306 * 110.37834 * 359.70823 * 23 22 21 25 25 H 1.08996 * 109.47076 * 180.83892 * 1 2 3 26 26 H 1.09002 * 109.47041 * 300.84090 * 1 2 3 27 27 H 1.09003 * 109.47246 * 60.83798 * 1 2 3 28 28 H 1.08991 * 111.00552 * 37.77245 * 4 2 1 29 29 H 1.09004 * 111.03615 * 273.93292 * 4 2 1 30 30 H 0.96997 * 119.99518 * 19.97438 * 7 5 4 31 31 H 0.97002 * 119.99594 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.88447 * 262.78098 * 16 5 4 33 33 H 1.08996 * 110.01243 * 141.68527 * 16 5 4 34 34 H 1.07999 * 124.37462 * 0.02562 * 21 20 18 35 35 H 1.08001 * 121.02736 * 180.19417 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7760 1.2276 5 6 3.4778 -1.1998 0.7341 6 1 4.1945 -0.3902 0.8722 7 7 3.9250 -2.4129 1.4230 8 6 5.2568 -2.7293 1.4572 9 1 5.9777 -2.0843 0.9767 10 6 5.6807 -3.8785 2.1104 11 7 4.8023 -4.6643 2.6963 12 14 7.4975 -4.3105 2.1565 13 1 8.2715 -3.2731 1.4285 14 1 7.9563 -4.3705 3.5675 15 1 7.7089 -5.6307 1.5106 16 6 3.2494 -1.4768 -0.7667 17 7 2.0431 -0.7384 -1.1683 18 6 1.4997 -0.7328 -2.4016 19 8 0.4958 -0.0820 -2.6209 20 6 2.1207 -1.5137 -3.4825 21 6 1.7037 -1.6310 -4.7968 22 6 2.5443 -2.4490 -5.5158 23 7 3.5518 -2.9789 -4.8971 24 16 3.5703 -2.5273 -3.4008 25 1 -0.3633 -1.0275 0.0150 26 1 -0.3633 0.5268 0.8824 27 1 -0.3634 0.5008 -0.8974 28 1 1.4511 -1.6480 1.4408 29 1 2.1399 -0.1270 2.1005 30 1 3.2777 -2.9920 1.8548 31 1 5.0984 -5.4675 3.1524 32 1 3.1013 -2.5445 -0.9283 33 1 4.1059 -1.1298 -1.3446 34 1 0.8327 -1.1408 -5.2062 35 1 2.3668 -2.6475 -6.5625 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988914261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = 29.352672 kcal Electronic energy + Delta-G solvation = -19835.681526 eV Core-core repulsion = 16768.092488 eV Total energy + Delta-G solvation = -3067.589038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12697 -39.08502 -37.30435 -34.26844 -32.43763 -31.50164 -30.78443 -28.52669 -26.18970 -25.38868 -23.98189 -22.73090 -20.76967 -20.33708 -19.16711 -17.99817 -17.28043 -16.53511 -16.41037 -15.57866 -14.93045 -14.68791 -14.29204 -13.85026 -13.74969 -13.40368 -13.29480 -13.17626 -12.80952 -12.29779 -12.00341 -11.89563 -11.37009 -11.22899 -11.15696 -10.93888 -10.75665 -10.41417 -10.38956 -10.09208 -9.82781 -9.71436 -9.64825 -9.07889 -8.83197 -8.46094 -7.18124 -5.91403 -3.23081 0.33832 1.35090 1.96092 2.21302 2.99153 3.17161 3.35941 3.42400 3.44300 4.40759 4.51302 4.92817 4.97874 4.99068 5.13210 5.14922 5.39438 5.48459 5.53720 5.60915 5.75746 5.77295 5.79964 5.97873 6.02034 6.09507 6.31037 6.35092 6.38998 6.50684 6.59902 6.74584 7.57127 7.61223 8.17351 8.25712 9.38190 9.90157 10.25054 11.30378 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.006041 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.565925 B = 4633.805676 C = 6137.386391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.178 3.822 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.252 4.252 9 H 0.075 0.925 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.056 3.944 17 N -0.601 5.601 18 C 0.608 3.392 19 O -0.536 6.536 20 C -0.271 4.271 21 C -0.119 4.119 22 C 0.051 3.949 23 N -0.541 5.541 24 S 0.463 5.537 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.388 0.612 31 H 0.257 0.743 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.171 0.829 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 7.782 -10.162 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.065 3.935 6 H 0.088 0.912 7 N -0.351 5.351 8 C -0.383 4.383 9 H 0.093 0.907 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.071 4.071 17 N -0.335 5.335 18 C 0.396 3.604 19 O -0.415 6.415 20 C -0.405 4.405 21 C -0.155 4.155 22 C -0.140 4.140 23 N -0.371 5.371 24 S 0.619 5.381 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.223 0.777 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.189 0.811 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.825 6.992 -9.669 12.871 hybrid contribution -0.584 0.058 -0.897 1.072 sum -5.409 7.050 -10.566 13.806 Atomic orbital electron populations 1.22179 0.94056 1.02702 1.03280 1.21919 0.94992 0.95355 0.84079 0.90467 1.23175 0.97588 1.00501 0.96274 1.21124 0.93415 0.91312 0.87687 0.91212 1.42401 1.06178 1.23801 1.62726 1.19291 0.83827 1.05503 1.29653 0.90738 1.24773 0.97770 0.97510 1.00209 1.69667 1.32549 1.15317 1.39916 0.86142 0.84695 0.78107 0.77372 1.20344 1.21727 1.21700 1.23625 0.85218 0.96859 1.01413 1.48480 1.28615 1.47906 1.08465 1.16348 0.83153 0.80642 0.80282 1.90723 1.24898 1.44011 1.81866 1.26921 1.05728 1.08735 0.99086 1.22033 1.01912 0.99945 0.91631 1.22182 0.91380 0.97679 1.02795 1.72090 1.25994 1.27870 1.11118 1.82685 1.19055 1.31265 1.05094 0.92650 0.92048 0.89774 0.90270 0.89750 0.77733 0.93299 0.90138 0.91661 0.81126 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.71 37.16 0.32 -1.85 16 2 C 0.14 1.93 3.76 -66.42 -0.25 1.68 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.99 6.11 -24.58 -0.15 -2.14 16 5 C 0.18 3.09 3.59 -66.10 -0.24 2.85 16 6 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 7 N -0.71 -15.94 5.18 -51.65 -0.27 -16.21 16 8 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 9 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.36 13.06 55.49 0.72 -25.63 16 12 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.06 0.91 5.00 -3.07 -0.02 0.90 16 17 N -0.60 -9.22 3.24 -164.43 -0.53 -9.75 16 18 C 0.61 9.72 7.62 -12.67 -0.10 9.63 16 19 O -0.54 -9.40 14.62 5.25 0.08 -9.33 16 20 C -0.27 -3.91 6.63 -35.93 -0.24 -4.15 16 21 C -0.12 -1.45 10.40 -39.77 -0.41 -1.87 16 22 C 0.05 0.60 11.14 -18.75 -0.21 0.39 16 23 N -0.54 -7.74 11.29 21.64 0.24 -7.50 16 24 S 0.46 6.66 19.35 -107.50 -2.08 4.58 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.24 5.89 -51.93 -0.31 0.93 16 28 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.39 9.36 7.71 -40.82 -0.31 9.05 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.08 1.42 6.89 -51.93 -0.36 1.06 16 33 H 0.07 1.00 7.12 -51.93 -0.37 0.63 16 34 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -29.55 304.52 -8.06 -37.62 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.26 Total: 6.85 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.53 Total: -1.33 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.17 Total: -59.09 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -2.08 Total: 4.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.55 -8.06 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988914261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.971 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds