Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.87325 * 2 1 4 4 C 1.54319 * 109.88360 * 238.98463 * 2 1 3 5 5 C 1.55154 * 102.94470 * 218.39327 * 4 2 1 6 6 H 1.08995 * 111.00647 * 153.61701 * 5 4 2 7 7 N 1.46506 * 111.00162 * 277.42912 * 5 4 2 8 8 C 1.36938 * 119.99589 * 205.00008 * 7 5 4 9 9 H 1.07999 * 120.00325 * 359.97438 * 8 7 5 10 10 C 1.38815 * 119.99408 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00325 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99550 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47228 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47239 * 120.00535 * 12 10 8 15 15 H 1.48501 * 109.46793 * 240.00116 * 12 10 8 16 16 C 1.54913 * 101.58237 * 35.49942 * 5 4 2 17 17 N 1.47019 * 109.88085 * 121.17632 * 2 1 3 18 18 C 1.34776 * 125.65006 * 298.40312 * 17 2 1 19 19 O 1.21632 * 119.99953 * 359.97438 * 18 17 2 20 20 C 1.47101 * 120.00351 * 179.97438 * 18 17 2 21 21 C 1.38381 * 128.00130 * 179.97438 * 20 18 17 22 22 C 1.37581 * 111.26669 * 180.02562 * 21 20 18 23 23 N 1.29549 * 117.94509 * 359.97438 * 22 21 20 24 24 S 1.56313 * 110.38459 * 359.69596 * 23 22 21 25 25 H 1.08994 * 109.47217 * 181.01629 * 1 2 3 26 26 H 1.09004 * 109.47049 * 301.01926 * 1 2 3 27 27 H 1.09004 * 109.46776 * 61.01499 * 1 2 3 28 28 H 1.08996 * 110.72144 * 100.02586 * 4 2 1 29 29 H 1.09004 * 110.71973 * 336.75320 * 4 2 1 30 30 H 0.96995 * 120.00050 * 24.72216 * 7 5 4 31 31 H 0.97000 * 119.99693 * 180.02562 * 11 10 8 32 32 H 1.08994 * 110.36658 * 81.83297 * 16 5 4 33 33 H 1.08996 * 110.36600 * 204.15824 * 16 5 4 34 34 H 1.08009 * 124.36659 * 359.97438 * 21 20 18 35 35 H 1.07995 * 121.02792 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 1 3.4856 -2.4088 -1.2834 7 7 4.4674 -0.6459 -0.6502 8 6 5.7217 -1.1931 -0.7003 9 1 5.8412 -2.2641 -0.7720 10 6 6.8396 -0.3712 -0.6588 11 7 6.6940 0.9340 -0.5709 12 14 8.5506 -1.1176 -0.7265 13 1 8.4425 -2.5955 -0.8225 14 1 9.2716 -0.5962 -1.9154 15 1 9.2981 -0.7544 0.5043 16 6 2.8145 -1.8805 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.8072 -0.3656 2.4652 19 8 1.1414 0.6199 2.7196 20 6 2.3693 -1.1754 3.5571 21 6 2.2465 -0.9704 4.9201 22 6 2.9133 -1.9402 5.6326 23 7 3.5320 -2.8644 4.9681 24 16 3.3528 -2.6424 3.4312 25 1 -0.3633 -1.0274 0.0182 26 1 -0.3633 0.5296 0.8807 27 1 -0.3633 0.4980 -0.8990 28 1 2.3529 -0.0432 -2.0201 29 1 1.3051 -1.4437 -1.6202 30 1 4.3601 0.3162 -0.5894 31 1 7.4752 1.5083 -0.5423 32 1 2.1886 -2.7725 0.7090 33 1 3.6716 -2.0358 1.3894 34 1 1.6986 -0.1539 5.3669 35 1 2.9208 -1.9314 6.7125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988914263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = 28.080794 kcal Electronic energy + Delta-G solvation = -20108.141484 eV Core-core repulsion = 17040.497293 eV Total energy + Delta-G solvation = -3067.644191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00238 -39.00463 -37.26863 -34.06738 -32.29667 -31.42695 -30.72320 -28.54921 -26.08656 -25.54019 -23.82450 -22.85452 -20.94715 -19.88383 -19.05660 -18.03608 -17.33941 -16.47136 -16.25657 -15.38002 -14.89233 -14.48729 -14.30651 -13.84332 -13.70889 -13.43858 -13.25090 -12.94569 -12.82591 -12.33501 -12.03241 -11.79070 -11.24717 -11.23585 -11.13864 -10.92824 -10.76001 -10.36699 -10.21868 -10.06160 -9.79419 -9.78337 -9.58511 -9.11303 -8.71738 -8.36643 -7.12464 -5.88599 -3.19883 0.43952 1.42515 2.02891 2.32052 3.11858 3.32973 3.36722 3.42532 3.45098 4.47551 4.55753 4.98450 5.03397 5.06460 5.19616 5.24870 5.41475 5.51507 5.59561 5.67856 5.69157 5.79580 5.88645 5.89998 6.05591 6.12625 6.32773 6.34545 6.45937 6.60145 6.61635 6.66811 7.59538 7.72549 8.28059 8.30722 9.40507 9.94016 10.28453 11.33055 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.007078 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.881362 B = 3955.006026 C = 5263.699521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.139 4.139 5 C 0.173 3.827 6 H 0.080 0.920 7 N -0.710 5.710 8 C -0.251 4.251 9 H 0.075 0.925 10 C -0.006 4.006 11 N -0.926 5.926 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.056 3.944 17 N -0.591 5.591 18 C 0.609 3.391 19 O -0.537 6.537 20 C -0.260 4.260 21 C -0.121 4.121 22 C 0.053 3.947 23 N -0.545 5.545 24 S 0.452 5.548 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 -6.367 4.710 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.178 4.178 5 C 0.060 3.940 6 H 0.098 0.902 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.093 0.907 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.736 3.264 13 H -0.203 1.203 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.073 4.073 17 N -0.323 5.323 18 C 0.397 3.603 19 O -0.416 6.416 20 C -0.394 4.394 21 C -0.157 4.157 22 C -0.138 4.138 23 N -0.375 5.375 24 S 0.608 5.392 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.221 0.779 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.189 0.811 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.525 -7.642 4.187 13.664 hybrid contribution 0.223 1.380 1.228 1.860 sum -10.301 -6.263 5.415 13.216 Atomic orbital electron populations 1.22147 0.95130 1.01927 1.02646 1.21532 0.93757 0.96815 0.84155 0.90370 1.23113 0.98214 1.00139 0.96333 1.21303 0.87170 0.94741 0.90813 0.90216 1.42369 1.00091 1.05537 1.86958 1.19286 0.83048 0.92153 1.43727 0.90702 1.24780 0.98015 0.95345 1.02208 1.69674 1.29071 1.02196 1.56343 0.86155 0.84676 0.78276 0.77282 1.20322 1.21734 1.21809 1.23730 0.94399 0.87378 1.01759 1.48246 1.51174 1.28636 1.04273 1.16289 0.80116 0.83510 0.80432 1.90767 1.40745 1.26874 1.83193 1.26837 1.09207 1.05194 0.98172 1.22033 1.01267 1.01109 0.91251 1.22146 0.97507 0.91547 1.02613 1.72082 1.25718 1.29508 1.10146 1.82317 1.38481 1.15786 1.02576 0.92738 0.91520 0.91730 0.89419 0.90482 0.77920 0.93349 0.91606 0.90099 0.81131 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.09 37.16 0.34 -1.76 16 2 C 0.14 2.16 3.45 -66.96 -0.23 1.93 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.14 -1.97 6.07 -24.90 -0.15 -2.12 16 5 C 0.17 2.96 3.72 -65.78 -0.24 2.72 16 6 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 7 N -0.71 -16.17 5.24 -51.35 -0.27 -16.44 16 8 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 9 H 0.08 1.83 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 12 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 C 0.06 0.88 5.41 -2.53 -0.01 0.87 16 17 N -0.59 -9.88 3.06 -164.40 -0.50 -10.38 16 18 C 0.61 10.94 7.63 -12.67 -0.10 10.85 16 19 O -0.54 -10.76 16.01 5.25 0.08 -10.68 16 20 C -0.26 -4.16 6.63 -35.94 -0.24 -4.40 16 21 C -0.12 -1.66 10.40 -39.77 -0.41 -2.07 16 22 C 0.05 0.69 11.15 -18.75 -0.21 0.48 16 23 N -0.55 -8.17 11.29 21.64 0.24 -7.93 16 24 S 0.45 6.70 19.34 -107.50 -2.08 4.62 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 0.88 7.85 -51.93 -0.41 0.48 16 30 H 0.39 9.70 7.86 -40.82 -0.32 9.38 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.40 5.14 -32.98 -0.17 1.23 16 34 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -31.09 306.68 -7.89 -38.98 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.18 Total: 7.35 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.51 Total: -0.36 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.20 Total: -61.00 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 6.70 SS G_CDS: -2.08 Total: 4.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.09 -7.89 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988914263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.057 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds