Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00335 * 2 1 4 4 O 1.21680 * 120.00176 * 180.46455 * 3 2 1 5 5 C 1.46679 * 119.99662 * 0.46596 * 3 2 1 6 6 C 1.35665 * 126.13228 * 171.65550 * 5 3 2 7 7 N 1.30941 * 114.19540 * 179.97438 * 6 5 3 8 8 C 1.29434 * 117.36359 * 0.02562 * 7 6 5 9 9 S 1.70960 * 110.38927 * 359.97438 * 8 7 6 10 10 C 1.46511 * 120.00053 * 180.02562 * 2 1 3 11 11 H 1.08995 * 110.64005 * 181.68747 * 10 2 1 12 12 C 1.55155 * 110.71703 * 305.01889 * 10 2 1 13 13 C 1.54912 * 101.58196 * 153.86419 * 12 10 2 14 14 N 1.47424 * 104.82978 * 322.99412 * 13 12 10 15 15 C 1.36935 * 125.64291 * 204.16168 * 14 13 12 16 16 H 1.08003 * 120.00193 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00163 * 359.95962 * 15 14 13 18 18 N 1.31617 * 120.00375 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99813 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47344 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47332 * 119.99900 * 19 17 15 22 22 H 1.48500 * 109.46977 * 239.99672 * 19 17 15 23 23 C 1.47013 * 108.70629 * 24.12210 * 14 13 12 24 24 H 1.08992 * 109.47666 * 83.51671 * 1 2 3 25 25 H 1.09004 * 109.47127 * 203.52034 * 1 2 3 26 26 H 1.09001 * 109.47089 * 323.51107 * 1 2 3 27 27 H 1.07998 * 122.90240 * 359.97438 * 6 5 3 28 28 H 1.07990 * 124.80575 * 180.26578 * 8 7 6 29 29 H 1.09002 * 111.00885 * 271.94069 * 12 10 2 30 30 H 1.09007 * 111.00529 * 35.78924 * 12 10 2 31 31 H 1.08995 * 110.36805 * 204.15035 * 13 12 10 32 32 H 1.09005 * 110.45650 * 81.87899 * 13 12 10 33 33 H 0.96995 * 120.00126 * 180.02562 * 18 17 15 34 34 H 1.08995 * 109.89021 * 239.52231 * 23 14 13 35 35 H 1.09002 * 109.88088 * 118.36015 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3556 1.1671 -0.0085 5 6 1.4055 2.4374 0.0103 6 6 1.9455 3.6716 0.1706 7 7 1.0727 4.6472 0.1408 8 6 -0.1698 4.3289 -0.0327 9 16 -0.3349 2.6340 -0.1836 10 6 2.1975 -1.2688 -0.0006 11 1 3.2725 -1.0918 0.0295 12 6 1.7507 -2.1611 1.1875 13 6 2.0637 -3.5786 0.6468 14 7 1.7323 -3.5167 -0.7883 15 6 1.3989 -4.5853 -1.5771 16 1 1.1716 -4.4349 -2.6222 17 6 1.3534 -5.8618 -1.0336 18 7 1.6312 -6.0452 0.2397 19 14 0.8993 -7.3195 -2.1099 20 1 0.6349 -6.8498 -3.4937 21 1 2.0203 -8.2934 -2.1230 22 1 -0.3187 -7.9740 -1.5686 23 6 1.8181 -2.1178 -1.2322 24 1 -0.3634 0.1160 -1.0210 25 1 -0.3633 -0.9423 0.4101 26 1 -0.3633 0.8262 0.6111 27 1 3.0038 3.8352 0.3105 28 1 -0.9860 5.0344 -0.0806 29 1 2.3373 -1.9452 2.0805 30 1 0.6850 -2.0446 1.3845 31 1 1.4430 -4.3214 1.1479 32 1 3.1194 -3.8136 0.7826 33 1 1.5998 -6.9372 0.6194 34 1 0.8540 -1.7931 -1.6235 35 1 2.5846 -2.0191 -2.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032943750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = 58.179908 kcal Electronic energy + Delta-G solvation = -19753.562415 eV Core-core repulsion = 16687.223420 eV Total energy + Delta-G solvation = -3066.338995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33634 -39.38165 -37.33761 -34.98588 -32.35687 -30.77534 -29.25370 -27.79833 -27.08517 -25.88543 -24.48974 -22.20709 -20.29380 -19.99248 -19.40357 -18.48237 -17.07356 -16.68861 -16.42448 -15.59558 -15.16288 -14.65275 -14.31056 -14.21884 -14.08962 -13.78281 -13.26550 -13.12207 -12.72202 -12.42423 -11.92726 -11.68424 -11.60843 -11.13880 -10.96288 -10.86566 -10.52906 -10.14237 -10.05081 -9.89217 -9.76389 -9.63323 -9.60428 -9.27830 -8.71696 -8.49245 -6.91100 -5.71302 -3.13863 0.07428 1.00096 1.40596 2.32998 2.93057 3.11940 3.36497 3.42440 3.44726 4.04962 4.43880 4.46536 4.89662 4.93654 5.11937 5.20248 5.35734 5.43745 5.47261 5.57969 5.62717 5.80235 5.87537 6.10658 6.26769 6.44625 6.48679 6.61344 6.84833 7.31128 7.41563 7.45096 7.56798 7.77710 8.06832 8.28565 9.15367 9.75817 10.39368 11.32586 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.039900 B = 0.003868 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.588136 B = 7238.023193 C = 7517.376647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.592 5.592 3 C 0.591 3.409 4 O -0.528 6.528 5 C -0.286 4.286 6 C 0.111 3.889 7 N -0.480 5.480 8 C -0.007 4.007 9 S 0.201 5.799 10 C 0.127 3.873 11 H 0.108 0.892 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.602 5.602 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.130 3.870 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.187 0.813 28 H 0.198 0.802 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.017 0.983 33 H 0.252 0.748 34 H 0.028 0.972 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 17.119 1.553 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.323 5.323 3 C 0.377 3.623 4 O -0.407 6.407 5 C -0.410 4.410 6 C -0.046 4.046 7 N -0.194 5.194 8 C -0.300 4.300 9 S 0.456 5.544 10 C 0.024 3.976 11 H 0.125 0.875 12 C -0.192 4.192 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.003 3.997 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.203 0.797 28 H 0.215 0.785 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.841 16.831 1.440 18.225 hybrid contribution 0.541 -0.441 -0.452 0.831 sum -6.300 16.391 0.988 17.587 Atomic orbital electron populations 1.22046 0.80186 1.03607 1.02427 1.47704 1.06761 1.05999 1.71876 1.16785 0.86639 0.81820 0.77058 1.90832 1.12445 1.86587 1.50813 1.25889 0.96858 0.99683 1.18596 1.22221 1.01190 0.85270 0.95962 1.66362 1.00989 1.35855 1.16171 1.29217 0.97822 1.01553 1.01448 1.84556 1.03912 1.02153 1.63770 1.22363 0.97178 0.80575 0.97439 0.87450 1.23428 1.00682 0.98732 0.96393 1.21954 0.99094 0.91671 0.84499 1.44442 1.81048 1.00692 1.06706 1.19117 1.38894 0.84949 0.92187 0.90365 1.24791 1.01890 0.97407 0.96433 1.69781 1.55394 1.20772 1.11064 0.85986 0.77691 0.82504 0.79228 1.20510 1.21688 1.21704 1.21515 0.98080 0.86295 0.93825 0.91365 0.87961 0.91332 0.79655 0.78489 0.91802 0.91582 0.87164 0.96547 0.93678 0.95431 0.95512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 7.68 59.84 0.46 1.19 16 2 N -0.59 -9.00 2.88 -173.38 -0.50 -9.50 16 3 C 0.59 9.28 7.64 -12.85 -0.10 9.18 16 4 O -0.53 -9.98 16.25 5.21 0.08 -9.90 16 5 C -0.29 -3.61 6.25 -37.10 -0.23 -3.84 16 6 C 0.11 1.36 11.10 -18.85 -0.21 1.15 16 7 N -0.48 -5.53 10.51 -15.38 -0.16 -5.69 16 8 C -0.01 -0.06 12.22 51.75 0.63 0.58 16 9 S 0.20 1.74 18.15 -107.50 -1.95 -0.21 16 10 C 0.13 2.30 3.36 -66.09 -0.22 2.08 16 11 H 0.11 2.10 6.99 -51.93 -0.36 1.74 16 12 C -0.15 -2.81 6.59 -24.58 -0.16 -2.97 16 13 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 14 N -0.60 -15.03 3.39 -170.08 -0.58 -15.61 16 15 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.18 10.09 55.49 0.56 -25.62 16 19 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.13 2.69 6.88 -3.07 -0.02 2.67 16 24 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 25 H 0.10 1.26 6.14 -51.93 -0.32 0.94 16 26 H 0.07 0.66 4.59 -23.58 -0.11 0.56 16 27 H 0.19 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.13 6.15 -51.93 -0.32 0.81 16 31 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.03 0.55 7.09 -51.93 -0.37 0.18 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -31.91 296.82 -7.06 -38.97 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.85 Total: -0.52 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.12 Total: 7.03 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.68 Total: -56.42 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.95 Total: -0.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.91 -7.06 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032943750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.154 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds