Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99648 * 2 1 4 4 O 1.21640 * 119.99435 * 186.02203 * 3 2 1 5 5 C 1.47095 * 120.00419 * 6.02439 * 3 2 1 6 6 C 1.38389 * 127.99871 * 187.07560 * 5 3 2 7 7 C 1.37582 * 111.26379 * 179.88561 * 6 5 3 8 8 N 1.29550 * 117.94624 * 0.43585 * 7 6 5 9 9 S 1.56304 * 110.38357 * 359.74782 * 8 7 6 10 10 C 1.46500 * 119.99793 * 179.97438 * 2 1 3 11 11 H 1.08997 * 110.91245 * 183.90520 * 10 2 1 12 12 C 1.55154 * 111.00597 * 60.00382 * 10 2 1 13 13 C 1.54319 * 102.94128 * 206.42360 * 12 10 2 14 14 N 1.47012 * 107.27417 * 22.19402 * 13 12 10 15 15 C 1.36936 * 125.64946 * 181.02430 * 14 13 12 16 16 H 1.08005 * 120.00317 * 174.79451 * 15 14 13 17 17 C 1.38811 * 120.00108 * 354.79719 * 15 14 13 18 18 N 1.31618 * 119.99696 * 212.95969 * 17 15 14 19 19 Si 1.86799 * 120.00010 * 33.22953 * 17 15 14 20 20 H 1.48493 * 109.47295 * 174.06008 * 19 17 15 21 21 H 1.48500 * 109.47293 * 294.06314 * 19 17 15 22 22 H 1.48505 * 109.46746 * 54.06304 * 19 17 15 23 23 C 1.47431 * 108.70388 * 1.28357 * 14 13 12 24 24 H 1.08997 * 109.47535 * 275.80429 * 1 2 3 25 25 H 1.09000 * 109.46934 * 35.81001 * 1 2 3 26 26 H 1.08999 * 109.46686 * 155.80262 * 1 2 3 27 27 H 1.08002 * 124.36355 * 0.02609 * 6 5 3 28 28 H 1.07998 * 121.02318 * 180.18826 * 7 6 5 29 29 H 1.08998 * 110.71894 * 88.05507 * 12 10 2 30 30 H 1.09006 * 110.87156 * 324.85961 * 12 10 2 31 31 H 1.09001 * 109.88038 * 262.77106 * 13 12 10 32 32 H 1.09005 * 109.87997 * 141.61043 * 13 12 10 33 33 H 0.96994 * 120.00688 * 5.28034 * 18 17 15 34 34 H 1.08997 * 110.36336 * 94.48675 * 23 14 13 35 35 H 1.09000 * 110.36608 * 216.80844 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3502 1.1701 -0.1105 5 6 1.4095 2.4376 0.1337 6 6 1.9095 3.7230 0.0207 7 6 0.9206 4.6612 0.2071 8 7 -0.2779 4.2384 0.4585 9 16 -0.3097 2.6759 0.4839 10 6 2.1975 -1.2688 0.0006 11 1 3.2718 -1.0978 0.0698 12 6 1.8484 -2.1130 -1.2535 13 6 2.1064 -3.5588 -0.7795 14 7 2.0264 -3.5578 0.6884 15 6 2.2160 -4.6452 1.4988 16 1 2.2187 -4.5250 2.5721 17 6 2.4048 -5.9022 0.9408 18 7 1.9598 -6.9725 1.5643 19 14 3.2970 -6.0751 -0.6912 20 1 3.4942 -7.5147 -0.9974 21 1 2.4883 -5.4466 -1.7665 22 1 4.6178 -5.4015 -0.6070 23 6 1.7020 -2.1934 1.1433 24 1 -0.3634 0.1039 1.0223 25 1 -0.3633 0.8334 -0.6013 26 1 -0.3633 -0.9374 -0.4212 27 1 2.9423 3.9592 -0.1891 28 1 1.1376 5.7176 0.1497 29 1 2.5044 -1.8570 -2.0855 30 1 0.8033 -1.9794 -1.5330 31 1 3.0981 -3.8815 -1.0966 32 1 1.3482 -4.2248 -1.1916 33 1 1.4338 -6.8787 2.3738 34 1 0.6263 -2.0857 1.2822 35 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033120993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = 61.478176 kcal Electronic energy + Delta-G solvation = -19781.001313 eV Core-core repulsion = 16714.805341 eV Total energy + Delta-G solvation = -3066.195972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24871 -39.26541 -37.64252 -35.18736 -32.58456 -31.66731 -29.61870 -28.40466 -27.32296 -26.06345 -23.96019 -22.43240 -20.85295 -20.11799 -19.35547 -18.64156 -17.52002 -16.89167 -16.62372 -15.73671 -15.40456 -15.06799 -14.50115 -14.17135 -13.71972 -13.51293 -13.39859 -13.28005 -13.08326 -12.72262 -12.51053 -12.08648 -11.58579 -11.42067 -11.09723 -11.09411 -10.78113 -10.61983 -10.11640 -10.03492 -9.95148 -9.71123 -9.14699 -9.05183 -8.66623 -8.38166 -7.16018 -6.40755 -3.17834 0.04741 1.00244 1.65109 1.96028 2.74020 2.92435 3.42191 3.55079 3.72085 4.18977 4.63792 4.70549 4.74657 4.83803 4.90947 5.03155 5.16611 5.26504 5.32903 5.37231 5.42423 5.53054 5.54955 5.78205 5.82889 6.13365 6.23164 6.28781 6.39896 6.51323 6.63059 6.74545 7.21221 7.64831 7.94001 8.29838 8.98236 9.54851 10.20509 11.07361 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041723 B = 0.004062 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.930637 B = 6891.238770 C = 7154.538654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.593 5.593 3 C 0.593 3.407 4 O -0.524 6.524 5 C -0.266 4.266 6 C -0.113 4.113 7 C 0.059 3.941 8 N -0.541 5.541 9 S 0.436 5.564 10 C 0.122 3.878 11 H 0.113 0.887 12 C -0.140 4.140 13 C 0.121 3.879 14 N -0.606 5.606 15 C -0.342 4.342 16 H 0.081 0.919 17 C -0.008 4.008 18 N -0.904 5.904 19 Si 1.035 2.965 20 H -0.298 1.298 21 H -0.278 1.278 22 H -0.296 1.296 23 C 0.134 3.866 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.174 0.826 28 H 0.179 0.821 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.032 0.968 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 20.864 -5.103 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.325 5.325 3 C 0.380 3.620 4 O -0.401 6.401 5 C -0.400 4.400 6 C -0.149 4.149 7 C -0.133 4.133 8 N -0.370 5.370 9 S 0.591 5.409 10 C 0.019 3.981 11 H 0.131 0.869 12 C -0.179 4.179 13 C -0.004 4.004 14 N -0.335 5.335 15 C -0.468 4.468 16 H 0.098 0.902 17 C -0.210 4.210 18 N -0.542 5.542 19 Si 0.866 3.134 20 H -0.226 1.226 21 H -0.204 1.204 22 H -0.224 1.224 23 C 0.007 3.993 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.192 0.808 28 H 0.196 0.804 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.242 19.379 -5.707 21.145 hybrid contribution 1.238 1.903 0.763 2.395 sum -5.004 21.283 -4.944 22.415 Atomic orbital electron populations 1.22055 0.79887 1.03951 1.02674 1.47612 1.06864 1.05772 1.72240 1.16773 0.86427 0.81700 0.77146 1.90829 1.13043 1.86500 1.49698 1.26905 1.01933 0.98249 1.12871 1.22122 1.02475 0.89910 1.00399 1.22224 0.86384 1.02868 1.01856 1.72103 1.27048 1.15146 1.22678 1.82157 1.04286 0.97870 1.56560 1.22668 0.97748 0.80623 0.97079 0.86929 1.22976 1.01671 0.96002 0.97215 1.21895 0.98741 0.93749 0.85992 1.44764 1.83322 1.04902 1.00462 1.19964 1.51671 0.84981 0.90198 0.90165 1.25591 1.00336 0.90676 1.04423 1.70921 1.33384 1.30348 1.19574 0.84444 0.77395 0.74496 0.77055 1.22562 1.20447 1.22363 1.21820 0.97747 0.84973 0.94771 0.91185 0.91314 0.88278 0.80834 0.80394 0.90953 0.90946 0.95299 0.93440 0.92513 0.95084 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 7.50 59.85 0.45 1.04 16 2 N -0.59 -8.08 2.91 -172.73 -0.50 -8.58 16 3 C 0.59 8.53 7.65 -12.67 -0.10 8.44 16 4 O -0.52 -9.30 16.38 5.24 0.09 -9.21 16 5 C -0.27 -3.03 6.41 -35.93 -0.23 -3.26 16 6 C -0.11 -1.10 10.41 -39.77 -0.41 -1.51 16 7 C 0.06 0.51 11.15 -18.75 -0.21 0.31 16 8 N -0.54 -5.64 11.29 21.63 0.24 -5.39 16 9 S 0.44 4.05 18.81 -107.50 -2.02 2.02 16 10 C 0.12 2.03 3.44 -65.67 -0.23 1.81 16 11 H 0.11 2.08 7.05 -51.93 -0.37 1.72 16 12 C -0.14 -2.27 6.49 -24.90 -0.16 -2.43 16 13 C 0.12 2.57 4.57 -3.07 -0.01 2.55 16 14 N -0.61 -14.51 3.38 -169.94 -0.57 -15.09 16 15 C -0.34 -9.63 10.40 -15.06 -0.16 -9.79 16 16 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 17 C -0.01 -0.24 5.44 -17.43 -0.09 -0.33 16 18 N -0.90 -27.78 13.70 55.49 0.76 -27.02 16 19 Si 1.03 25.69 25.06 -169.99 -4.26 21.44 16 20 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.28 -6.21 5.08 56.52 0.29 -5.92 16 22 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.13 2.59 6.79 -2.41 -0.02 2.58 16 24 H 0.07 0.62 7.63 -51.93 -0.40 0.22 16 25 H 0.07 0.56 5.26 -31.98 -0.17 0.39 16 26 H 0.10 0.97 6.36 -51.93 -0.33 0.64 16 27 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.01 6.48 -51.93 -0.34 0.68 16 31 H 0.03 0.65 4.75 -51.93 -0.25 0.40 16 32 H 0.05 1.05 6.71 -51.93 -0.35 0.70 16 33 H 0.27 8.03 8.73 -40.82 -0.36 7.68 16 34 H 0.03 0.56 6.94 -51.93 -0.36 0.20 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 291.44 15.07 4.39 4.39 Total: -1.00 -33.64 291.44 -6.98 -40.62 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -3.93 Total: -2.57 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.17 Total: -0.61 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.07 Total: -56.08 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.26 Total: 21.44 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -2.02 Total: 2.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.64 -6.98 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033120993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.096 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds