Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99648 * 2 1 4 4 O 1.21640 * 119.99435 * 186.02203 * 3 2 1 5 5 C 1.47095 * 120.00419 * 6.02439 * 3 2 1 6 6 C 1.38389 * 127.99871 * 187.07560 * 5 3 2 7 7 C 1.37582 * 111.26379 * 179.88561 * 6 5 3 8 8 N 1.29550 * 117.94624 * 0.43585 * 7 6 5 9 9 S 1.56304 * 110.38357 * 359.74782 * 8 7 6 10 10 C 1.46500 * 119.99793 * 179.97438 * 2 1 3 11 11 H 1.08997 * 110.91245 * 183.90520 * 10 2 1 12 12 C 1.55154 * 111.00597 * 60.00382 * 10 2 1 13 13 C 1.54319 * 102.94128 * 206.42360 * 12 10 2 14 14 N 1.47012 * 107.27417 * 22.19402 * 13 12 10 15 15 C 1.36936 * 125.64946 * 181.02430 * 14 13 12 16 16 H 1.08005 * 120.00317 * 174.79451 * 15 14 13 17 17 C 1.38811 * 120.00108 * 354.79719 * 15 14 13 18 18 N 1.31618 * 119.99696 * 212.95969 * 17 15 14 19 19 Si 1.86799 * 120.00010 * 33.22953 * 17 15 14 20 20 H 1.48493 * 109.47295 * 174.06008 * 19 17 15 21 21 H 1.48500 * 109.47293 * 294.06314 * 19 17 15 22 22 H 1.48505 * 109.46746 * 54.06304 * 19 17 15 23 23 C 1.47431 * 108.70388 * 1.28357 * 14 13 12 24 24 H 1.08997 * 109.47535 * 275.80429 * 1 2 3 25 25 H 1.09000 * 109.46934 * 35.81001 * 1 2 3 26 26 H 1.08999 * 109.46686 * 155.80262 * 1 2 3 27 27 H 1.08002 * 124.36355 * 0.02609 * 6 5 3 28 28 H 1.07998 * 121.02318 * 180.18826 * 7 6 5 29 29 H 1.08998 * 110.71894 * 88.05507 * 12 10 2 30 30 H 1.09006 * 110.87156 * 324.85961 * 12 10 2 31 31 H 1.09001 * 109.88038 * 262.77106 * 13 12 10 32 32 H 1.09005 * 109.87997 * 141.61043 * 13 12 10 33 33 H 0.96994 * 120.00688 * 5.28034 * 18 17 15 34 34 H 1.08997 * 110.36336 * 94.48675 * 23 14 13 35 35 H 1.09000 * 110.36608 * 216.80844 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3502 1.1701 -0.1105 5 6 1.4095 2.4376 0.1337 6 6 1.9095 3.7230 0.0207 7 6 0.9206 4.6612 0.2071 8 7 -0.2779 4.2384 0.4585 9 16 -0.3097 2.6759 0.4839 10 6 2.1975 -1.2688 0.0006 11 1 3.2718 -1.0978 0.0698 12 6 1.8484 -2.1130 -1.2535 13 6 2.1064 -3.5588 -0.7795 14 7 2.0264 -3.5578 0.6884 15 6 2.2160 -4.6452 1.4988 16 1 2.2187 -4.5250 2.5721 17 6 2.4048 -5.9022 0.9408 18 7 1.9598 -6.9725 1.5643 19 14 3.2970 -6.0751 -0.6912 20 1 3.4942 -7.5147 -0.9974 21 1 2.4883 -5.4466 -1.7665 22 1 4.6178 -5.4015 -0.6070 23 6 1.7020 -2.1934 1.1433 24 1 -0.3634 0.1039 1.0223 25 1 -0.3633 0.8334 -0.6013 26 1 -0.3633 -0.9374 -0.4212 27 1 2.9423 3.9592 -0.1891 28 1 1.1376 5.7176 0.1497 29 1 2.5044 -1.8570 -2.0855 30 1 0.8033 -1.9794 -1.5330 31 1 3.0981 -3.8815 -1.0966 32 1 1.3482 -4.2248 -1.1916 33 1 1.4338 -6.8787 2.3738 34 1 0.6263 -2.0857 1.2822 35 1 2.2296 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033120993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = 36.940448 kcal Electronic energy + Delta-G solvation = -19782.065349 eV Core-core repulsion = 16714.805341 eV Total energy + Delta-G solvation = -3067.260008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35963 -40.11374 -39.07524 -36.50715 -34.49027 -32.68459 -31.26079 -29.86269 -28.24973 -27.12123 -25.62764 -23.49924 -22.56740 -21.36392 -20.33195 -19.61550 -19.53877 -17.82260 -17.72844 -17.04396 -16.72536 -16.22145 -15.63338 -15.36723 -15.18699 -15.11877 -14.52813 -14.37494 -14.28919 -14.05303 -13.82768 -13.41712 -13.05981 -12.98366 -12.49739 -12.40305 -12.34711 -11.83777 -11.60537 -11.47284 -11.22404 -10.98394 -10.79253 -10.47913 -9.91101 -9.69473 -9.16160 -8.68038 -5.37258 -0.76686 0.23436 0.92626 1.20422 1.44644 1.55034 1.66521 1.75839 1.93163 2.57636 2.96541 3.27775 3.39023 3.71663 3.76952 3.99155 4.01397 4.03728 4.11214 4.33916 4.35192 4.44220 4.68018 4.71286 4.77977 4.85463 4.89145 4.92389 5.02147 5.16456 5.34891 5.53508 5.59645 6.09275 6.14720 6.81051 6.86153 7.46648 8.11778 8.81263 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041723 B = 0.004062 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.930637 B = 6891.238770 C = 7154.538654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.591 5.591 3 C 0.593 3.407 4 O -0.567 6.567 5 C -0.295 4.295 6 C -0.105 4.105 7 C 0.063 3.937 8 N -0.561 5.561 9 S 0.474 5.526 10 C 0.137 3.863 11 H 0.091 0.909 12 C -0.125 4.125 13 C 0.112 3.888 14 N -0.628 5.628 15 C -0.335 4.335 16 H 0.049 0.951 17 C -0.062 4.062 18 N -0.940 5.940 19 Si 1.075 2.925 20 H -0.309 1.309 21 H -0.234 1.234 22 H -0.292 1.292 23 C 0.133 3.867 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.183 0.817 28 H 0.210 0.790 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.022 0.978 32 H 0.043 0.957 33 H 0.252 0.748 34 H 0.052 0.948 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 23.513 -7.045 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.322 5.322 3 C 0.382 3.618 4 O -0.447 6.447 5 C -0.429 4.429 6 C -0.142 4.142 7 C -0.128 4.128 8 N -0.391 5.391 9 S 0.631 5.369 10 C 0.032 3.968 11 H 0.109 0.891 12 C -0.163 4.163 13 C -0.013 4.013 14 N -0.356 5.356 15 C -0.462 4.462 16 H 0.067 0.933 17 C -0.258 4.258 18 N -0.582 5.582 19 Si 0.902 3.098 20 H -0.237 1.237 21 H -0.159 1.159 22 H -0.220 1.220 23 C 0.006 3.994 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.125 0.875 27 H 0.201 0.799 28 H 0.227 0.773 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.425 22.086 -7.657 24.527 hybrid contribution 1.530 1.216 1.505 2.467 sum -5.895 23.302 -6.152 24.811 Atomic orbital electron populations 1.22357 0.77467 1.05386 1.04182 1.47558 1.08213 1.04484 1.71925 1.17113 0.86050 0.82587 0.76096 1.90802 1.14970 1.87219 1.51718 1.26702 1.03575 0.97377 1.15205 1.22378 1.03241 0.89497 0.99071 1.22573 0.85443 1.04170 1.00579 1.72107 1.27852 1.15864 1.23241 1.81916 1.02105 0.97281 1.55644 1.22167 0.96881 0.81654 0.96069 0.89100 1.22923 1.04077 0.92182 0.97115 1.22032 0.98057 0.97084 0.84127 1.44791 1.83442 1.05579 1.01786 1.19841 1.50113 0.86748 0.89529 0.93298 1.26785 1.00947 0.90577 1.07472 1.71020 1.35619 1.31403 1.20157 0.83938 0.76859 0.74087 0.74945 1.23747 1.15854 1.21999 1.21937 0.98582 0.83597 0.95236 0.89868 0.89119 0.87485 0.79944 0.77348 0.88974 0.87953 0.96017 0.93922 0.93881 0.93041 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 7.50 127.77 0.96 1.78 16 2 N -0.59 -14.78 2.91 -818.65 -2.38 -17.16 16 3 C 0.59 16.16 7.65 86.57 0.66 16.82 16 4 O -0.57 -19.86 16.38 -4.16 -0.07 -19.92 16 5 C -0.30 -6.07 6.41 24.63 0.16 -5.91 16 6 C -0.11 -1.78 10.41 22.15 0.23 -1.55 16 7 C 0.06 0.91 11.15 84.87 0.95 1.85 16 8 N -0.56 -9.94 11.29 -85.49 -0.97 -10.90 16 9 S 0.47 7.38 18.81 -56.49 -1.06 6.32 16 10 C 0.14 4.33 3.44 46.46 0.16 4.49 16 11 H 0.09 3.32 7.05 -2.39 -0.02 3.30 16 12 C -0.12 -3.63 6.49 31.78 0.21 -3.43 16 13 C 0.11 4.48 4.57 86.73 0.40 4.87 16 14 N -0.63 -29.81 3.38 -691.56 -2.34 -32.15 16 15 C -0.33 -19.28 10.40 84.03 0.87 -18.40 16 16 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 17 C -0.06 -3.64 5.44 84.86 0.46 -3.18 16 18 N -0.94 -59.63 13.70 21.65 0.30 -59.33 16 19 Si 1.08 51.93 25.06 68.60 1.72 53.65 16 20 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 21 H -0.23 -9.66 5.08 99.48 0.51 -9.15 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 C 0.13 5.03 6.79 86.93 0.59 5.62 16 24 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 25 H 0.09 1.13 5.26 -15.07 -0.08 1.05 16 26 H 0.11 1.66 6.36 -2.39 -0.02 1.64 16 27 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.39 6.48 -2.38 -0.02 2.38 16 31 H 0.02 0.93 4.75 -2.39 -0.01 0.92 16 32 H 0.04 1.76 6.71 -2.38 -0.02 1.75 16 33 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 34 H 0.05 1.76 6.94 -2.39 -0.02 1.75 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -75.20 291.44 1.66 -73.55 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 0.81 Total: 2.97 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.64 Total: 2.97 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -5.39 Total: -119.54 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.92 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 1.72 Total: 53.65 kcal Atomic # 16 Polarization: 7.38 SS G_CDS: -1.06 Total: 6.32 kcal Total: -75.20 1.66 -73.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033120993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.489 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds