Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99737 * 2 1 4 4 O 1.21626 * 120.00004 * 177.62241 * 3 2 1 5 5 C 1.47103 * 119.99837 * 357.62369 * 3 2 1 6 6 C 1.38378 * 127.99516 * 187.85879 * 5 3 2 7 7 C 1.37579 * 111.26378 * 179.89103 * 6 5 3 8 8 N 1.29556 * 117.94708 * 0.43078 * 7 6 5 9 9 S 1.56311 * 110.38106 * 359.75953 * 8 7 6 10 10 C 1.46499 * 120.00224 * 180.02562 * 2 1 3 11 11 H 1.08999 * 110.64055 * 181.68524 * 10 2 1 12 12 C 1.55161 * 110.87072 * 304.92909 * 10 2 1 13 13 C 1.55127 * 101.48371 * 82.76909 * 12 10 2 14 14 N 1.47425 * 104.72149 * 37.29464 * 13 12 10 15 15 C 1.36936 * 125.64479 * 155.81257 * 14 13 12 16 16 H 1.08002 * 119.99901 * 186.27161 * 15 14 13 17 17 C 1.38820 * 120.00342 * 6.27717 * 15 14 13 18 18 N 1.31616 * 119.99694 * 34.74597 * 17 15 14 19 19 Si 1.86796 * 119.99981 * 214.75264 * 17 15 14 20 20 H 1.48503 * 109.46776 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47208 * 299.99511 * 19 17 15 22 22 H 1.48497 * 109.47452 * 59.99659 * 19 17 15 23 23 C 1.47011 * 108.70432 * 335.55266 * 14 13 12 24 24 H 1.09003 * 109.47059 * 276.07076 * 1 2 3 25 25 H 1.08996 * 109.47779 * 36.07570 * 1 2 3 26 26 H 1.09003 * 109.46981 * 156.07737 * 1 2 3 27 27 H 1.08008 * 124.37133 * 0.03684 * 6 5 3 28 28 H 1.08000 * 121.02715 * 180.19395 * 7 6 5 29 29 H 1.09001 * 111.00629 * 201.01222 * 12 10 2 30 30 H 1.09001 * 111.00400 * 324.82478 * 12 10 2 31 31 H 1.09000 * 110.49647 * 278.45124 * 13 12 10 32 32 H 1.09006 * 110.34142 * 156.06070 * 13 12 10 33 33 H 0.97001 * 120.00215 * 356.01681 * 18 17 15 34 34 H 1.09002 * 109.88210 * 120.70194 * 23 14 13 35 35 H 1.09001 * 109.88567 * 241.86431 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3543 1.1678 0.0437 5 6 1.4042 2.4406 -0.0528 6 6 1.9192 3.7153 -0.2100 7 6 0.9194 4.6604 -0.2138 8 7 -0.3018 4.2530 -0.0686 9 16 -0.3429 2.6973 0.0779 10 6 2.1975 -1.2687 -0.0006 11 1 3.2726 -1.0916 0.0295 12 6 1.7551 -2.1630 1.1877 13 6 0.4730 -2.8236 0.6164 14 7 0.7776 -3.0647 -0.8058 15 6 0.1853 -4.0102 -1.5996 16 1 0.5484 -4.1773 -2.6030 17 6 -0.8820 -4.7539 -1.1149 18 7 -1.7496 -4.2017 -0.2936 19 14 -1.0864 -6.5383 -1.6280 20 1 -2.2947 -7.1052 -0.9769 21 1 -1.2366 -6.6151 -3.1035 22 1 0.1097 -7.3135 -1.2113 23 6 1.8182 -2.1177 -1.2321 24 1 -0.3633 0.1087 1.0219 25 1 -0.3634 0.8305 -0.6051 26 1 -0.3633 -0.9394 -0.4167 27 1 2.9702 3.9393 -0.3183 28 1 1.1460 5.7100 -0.3302 29 1 2.5143 -2.9104 1.4181 30 1 1.5243 -1.5599 2.0658 31 1 -0.3788 -2.1504 0.7131 32 1 0.2727 -3.7659 1.1265 33 1 -1.6120 -3.2937 0.0185 34 1 2.6917 -2.6630 -1.5897 35 1 1.4320 -1.4734 -2.0219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033120996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = 57.271308 kcal Electronic energy + Delta-G solvation = -20123.150412 eV Core-core repulsion = 17056.772016 eV Total energy + Delta-G solvation = -3066.378395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21741 -39.17699 -37.62568 -34.77160 -32.60569 -31.40174 -29.29862 -28.41532 -26.85200 -25.72781 -24.21335 -22.59179 -20.32166 -20.07642 -19.25187 -18.45359 -17.69847 -16.73575 -16.48979 -15.65997 -15.13907 -14.57830 -14.35199 -14.11146 -13.74266 -13.61892 -13.27713 -13.04311 -12.80084 -12.45854 -12.13790 -11.90997 -11.47169 -11.17338 -10.90802 -10.74453 -10.51417 -10.43465 -10.33320 -10.03926 -9.84502 -9.79332 -9.72457 -8.95346 -8.55375 -8.31845 -7.05075 -6.28126 -3.12267 0.19072 1.15225 1.79984 2.09556 2.89991 3.05418 3.46503 3.52341 3.69085 4.32987 4.51572 4.83910 4.89126 5.05731 5.12698 5.16425 5.23884 5.44564 5.49311 5.51701 5.61827 5.68259 5.88132 5.93928 6.01240 6.26793 6.29300 6.38530 6.51231 6.74908 6.86470 6.89510 7.35268 7.69975 8.05508 8.42657 8.91157 9.76095 10.29005 11.13094 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.004611 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.085141 B = 6070.427467 C = 6597.476513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.585 5.585 3 C 0.593 3.407 4 O -0.532 6.532 5 C -0.268 4.268 6 C -0.115 4.115 7 C 0.057 3.943 8 N -0.548 5.548 9 S 0.446 5.554 10 C 0.127 3.873 11 H 0.108 0.892 12 C -0.145 4.145 13 C 0.132 3.868 14 N -0.603 5.603 15 C -0.350 4.350 16 H 0.070 0.930 17 C -0.021 4.021 18 N -0.911 5.911 19 Si 1.065 2.935 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.128 3.872 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.040 0.960 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 13.350 2.607 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.317 5.317 3 C 0.379 3.621 4 O -0.411 6.411 5 C -0.402 4.402 6 C -0.151 4.151 7 C -0.135 4.135 8 N -0.377 5.377 9 S 0.603 5.397 10 C 0.024 3.976 11 H 0.126 0.874 12 C -0.185 4.185 13 C 0.007 3.993 14 N -0.331 5.331 15 C -0.477 4.477 16 H 0.088 0.912 17 C -0.224 4.224 18 N -0.552 5.552 19 Si 0.895 3.105 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.222 1.222 23 C 0.002 3.998 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.190 0.810 28 H 0.194 0.806 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.032 11.692 2.899 12.216 hybrid contribution 2.681 2.099 -0.482 3.439 sum 4.713 13.791 2.417 14.773 Atomic orbital electron populations 1.22444 0.79441 1.04988 1.02189 1.47658 1.07142 1.05507 1.71388 1.16802 0.86454 0.81784 0.77036 1.90786 1.12673 1.86729 1.50883 1.26893 1.01626 0.98354 1.13330 1.22079 1.02492 0.89972 1.00533 1.22186 0.85938 1.02674 1.02702 1.72077 1.26964 1.16449 1.22161 1.82451 1.02453 0.97035 1.57800 1.22229 0.96819 0.81448 0.97102 0.87416 1.23218 1.00278 0.98507 0.96453 1.21854 0.93104 0.98486 0.85849 1.44629 1.43571 1.38849 1.06050 1.19693 1.16657 1.12944 0.98389 0.91199 1.25665 0.91822 1.04601 1.00265 1.70901 1.29674 1.16999 1.37634 0.83471 0.75822 0.75753 0.75427 1.21184 1.22042 1.22186 1.21634 0.93235 0.91130 0.93822 0.91401 0.92173 0.86024 0.80966 0.80618 0.90127 0.91331 0.95054 0.92572 0.92064 0.94260 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 7.35 59.85 0.44 1.24 16 2 N -0.59 -9.28 2.83 -173.23 -0.49 -9.77 16 3 C 0.59 9.41 7.66 -12.66 -0.10 9.32 16 4 O -0.53 -9.74 16.34 5.25 0.09 -9.66 16 5 C -0.27 -3.57 6.47 -35.94 -0.23 -3.80 16 6 C -0.12 -1.29 10.41 -39.77 -0.41 -1.70 16 7 C 0.06 0.59 11.15 -18.75 -0.21 0.38 16 8 N -0.55 -6.79 11.29 21.64 0.24 -6.54 16 9 S 0.45 5.29 18.80 -107.50 -2.02 3.26 16 10 C 0.13 2.17 3.57 -66.10 -0.24 1.94 16 11 H 0.11 1.82 6.99 -51.93 -0.36 1.46 16 12 C -0.15 -2.47 6.55 -24.46 -0.16 -2.63 16 13 C 0.13 2.79 4.30 -2.41 -0.01 2.78 16 14 N -0.60 -14.21 2.95 -169.94 -0.50 -14.71 16 15 C -0.35 -9.42 10.01 -15.06 -0.15 -9.57 16 16 H 0.07 1.91 8.02 -52.49 -0.42 1.49 16 17 C -0.02 -0.58 4.96 -17.43 -0.09 -0.67 16 18 N -0.91 -25.91 12.96 55.49 0.72 -25.19 16 19 Si 1.07 24.59 30.03 -169.99 -5.11 19.48 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.13 2.57 6.29 -3.07 -0.02 2.55 16 24 H 0.07 0.86 8.01 -51.93 -0.42 0.45 16 25 H 0.06 0.79 4.46 -24.10 -0.11 0.68 16 26 H 0.12 2.18 4.75 -51.93 -0.25 1.93 16 27 H 0.17 1.65 8.06 -52.48 -0.42 1.22 16 28 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.67 4.43 -51.93 -0.23 0.44 16 32 H 0.06 1.34 7.52 -51.93 -0.39 0.95 16 33 H 0.27 7.40 5.79 -40.82 -0.24 7.17 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -31.29 293.81 -7.55 -38.84 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.74 Total: 0.03 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.18 Total: -0.16 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.03 Total: -56.22 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.11 Total: 19.48 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -2.02 Total: 3.26 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.29 -7.55 -38.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033120996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.112 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds