Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99703 * 2 1 4 4 O 1.21576 * 119.99769 * 185.76058 * 3 2 1 5 5 C 1.47690 * 119.99970 * 5.75564 * 3 2 1 6 6 C 1.39493 * 122.10136 * 186.72721 * 5 3 2 7 7 C 1.34994 * 111.68031 * 179.78518 * 6 5 3 8 8 S 1.71759 * 105.45479 * 0.43716 * 7 6 5 9 9 N 1.30608 * 122.10453 * 7.02133 * 5 3 2 10 10 C 1.46493 * 120.00287 * 179.97438 * 2 1 3 11 11 H 1.08994 * 110.88950 * 183.88737 * 10 2 1 12 12 C 1.55154 * 111.00354 * 59.99933 * 10 2 1 13 13 C 1.54332 * 102.94316 * 206.42457 * 12 10 2 14 14 N 1.47023 * 107.27004 * 22.19406 * 13 12 10 15 15 C 1.36936 * 125.64966 * 181.01960 * 14 13 12 16 16 H 1.07992 * 120.00187 * 174.74624 * 15 14 13 17 17 C 1.38814 * 119.99513 * 354.75213 * 15 14 13 18 18 N 1.31619 * 119.99553 * 212.03401 * 17 15 14 19 19 Si 1.86797 * 120.00459 * 32.30672 * 17 15 14 20 20 H 1.48499 * 109.47115 * 174.08565 * 19 17 15 21 21 H 1.48503 * 109.46686 * 294.08516 * 19 17 15 22 22 H 1.48495 * 109.46929 * 54.08152 * 19 17 15 23 23 C 1.47430 * 108.70085 * 1.28926 * 14 13 12 24 24 H 1.08997 * 109.47701 * 275.63618 * 1 2 3 25 25 H 1.09007 * 109.47115 * 35.63556 * 1 2 3 26 26 H 1.09003 * 109.46913 * 155.62855 * 1 2 3 27 27 H 1.07998 * 124.15543 * 359.97438 * 6 5 3 28 28 H 1.08003 * 127.27449 * 180.16839 * 7 6 5 29 29 H 1.09003 * 110.72120 * 88.06908 * 12 10 2 30 30 H 1.08993 * 110.87627 * 324.85976 * 12 10 2 31 31 H 1.08997 * 109.88442 * 262.77588 * 13 12 10 32 32 H 1.08994 * 110.00949 * 141.68538 * 13 12 10 33 33 H 0.96997 * 120.00070 * 5.28165 * 18 17 15 34 34 H 1.09001 * 110.36694 * 94.48237 * 23 14 13 35 35 H 1.09002 * 110.36130 * 216.80272 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3500 1.1700 -0.1057 5 6 1.4059 2.4431 0.1283 6 6 2.0397 3.6786 -0.0039 7 6 1.1729 4.7024 0.1474 8 16 -0.3506 3.9709 0.4537 9 7 0.1246 2.4854 0.3782 10 6 2.1975 -1.2686 0.0006 11 1 3.2716 -1.0971 0.0695 12 6 1.8484 -2.1129 -1.2534 13 6 2.1064 -3.5588 -0.7795 14 7 2.0265 -3.5578 0.6886 15 6 2.2161 -4.6452 1.4990 16 1 2.2197 -4.5247 2.5722 17 6 2.4039 -5.9022 0.9409 18 7 1.9749 -6.9738 1.5735 19 14 3.2720 -6.0738 -0.7042 20 1 3.4725 -7.5130 -1.0103 21 1 2.4435 -5.4520 -1.7682 22 1 4.5900 -5.3926 -0.6416 23 6 1.7020 -2.1934 1.1433 24 1 -0.3634 0.1009 1.0226 25 1 -0.3634 0.8353 -0.5988 26 1 -0.3633 -0.9361 -0.4241 27 1 3.0936 3.8010 -0.2057 28 1 1.3921 5.7586 0.0923 29 1 2.5044 -1.8571 -2.0855 30 1 0.8034 -1.9795 -1.5329 31 1 3.0981 -3.8815 -1.0965 32 1 1.3502 -4.2269 -1.1914 33 1 1.4608 -6.8812 2.3908 34 1 0.6262 -2.0857 1.2822 35 1 2.2296 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033182728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = 67.636640 kcal Electronic energy + Delta-G solvation = -19869.065498 eV Core-core repulsion = 16803.136577 eV Total energy + Delta-G solvation = -3065.928921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75341 -38.81083 -37.42539 -35.05957 -32.46290 -31.71810 -29.57944 -28.35908 -27.12462 -26.20242 -23.84227 -22.11279 -20.79420 -20.14499 -19.16314 -18.74332 -17.46829 -17.29800 -16.36291 -15.81838 -15.26287 -14.65638 -14.28917 -14.09108 -13.56990 -13.43020 -13.30621 -12.98182 -12.89947 -12.62983 -12.44493 -11.99543 -11.51919 -11.33078 -11.06837 -11.00859 -10.96660 -10.55080 -10.14602 -9.96233 -9.87844 -9.65009 -9.12675 -9.05006 -8.48510 -8.35158 -7.09760 -6.35989 -3.13317 0.30933 1.16493 1.53277 1.56474 2.97377 3.12884 3.45969 3.58016 3.75448 4.33353 4.57943 4.67680 4.99863 5.00746 5.13376 5.23285 5.29886 5.34440 5.42466 5.51042 5.51571 5.69806 5.85443 5.90317 5.97908 6.04556 6.21988 6.44692 6.49843 6.56534 6.76664 6.81131 7.40202 7.70000 8.08214 8.34254 9.03243 9.59615 10.25850 11.12299 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042780 B = 0.003935 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.357819 B = 7114.478718 C = 7358.525099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.582 5.582 3 C 0.586 3.414 4 O -0.532 6.532 5 C 0.054 3.946 6 C -0.133 4.133 7 C -0.282 4.282 8 S 0.445 5.555 9 N -0.506 5.506 10 C 0.120 3.880 11 H 0.111 0.889 12 C -0.139 4.139 13 C 0.121 3.879 14 N -0.607 5.607 15 C -0.339 4.339 16 H 0.080 0.920 17 C -0.010 4.010 18 N -0.906 5.906 19 Si 1.037 2.963 20 H -0.299 1.299 21 H -0.278 1.278 22 H -0.296 1.296 23 C 0.136 3.864 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.172 0.828 28 H 0.185 0.815 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.032 0.968 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 24.995 -5.104 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.313 5.313 3 C 0.369 3.631 4 O -0.408 6.408 5 C -0.120 4.120 6 C -0.166 4.166 7 C -0.430 4.430 8 S 0.600 5.400 9 N -0.341 5.341 10 C 0.016 3.984 11 H 0.129 0.871 12 C -0.178 4.178 13 C -0.004 4.004 14 N -0.336 5.336 15 C -0.465 4.465 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.545 5.545 19 Si 0.869 3.131 20 H -0.226 1.226 21 H -0.205 1.205 22 H -0.224 1.224 23 C 0.008 3.992 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.203 0.797 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.977 23.472 -5.750 25.154 hybrid contribution 1.429 1.256 0.799 2.064 sum -5.548 24.729 -4.951 25.823 Atomic orbital electron populations 1.21981 0.78493 1.02522 1.02677 1.47635 1.07775 1.05253 1.70623 1.17308 0.86292 0.82094 0.77448 1.90801 1.13008 1.86424 1.50591 1.21221 0.88495 0.96499 1.05787 1.21421 1.03254 0.89350 1.02564 1.27160 1.01343 1.05466 1.09070 1.80657 1.11862 0.92102 1.55354 1.72926 1.16855 1.21579 1.22694 1.22645 0.97686 0.81048 0.96975 0.87138 1.22958 1.01670 0.95927 0.97208 1.21902 0.98632 0.93860 0.86011 1.44765 1.83335 1.04979 1.00472 1.19984 1.51311 0.85022 0.90208 0.90201 1.25602 1.00372 0.90645 1.04566 1.70922 1.34454 1.30140 1.19019 0.84405 0.77307 0.74368 0.77049 1.22619 1.20470 1.22402 1.21803 0.97751 0.84884 0.94739 0.92075 0.90030 0.90874 0.81100 0.79734 0.91050 0.90969 0.95372 0.93444 0.92588 0.95084 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 7.74 59.84 0.46 1.60 16 2 N -0.58 -9.16 2.91 -172.52 -0.50 -9.66 16 3 C 0.59 9.33 7.65 -12.40 -0.09 9.23 16 4 O -0.53 -9.89 16.08 5.30 0.09 -9.81 16 5 C 0.05 0.69 6.42 -84.06 -0.54 0.15 16 6 C -0.13 -1.36 9.98 -40.27 -0.40 -1.76 16 7 C -0.28 -1.99 11.40 29.58 0.34 -1.65 16 8 S 0.44 3.24 23.20 -107.50 -2.49 0.75 16 9 N -0.51 -5.65 7.53 24.84 0.19 -5.46 16 10 C 0.12 2.20 3.45 -65.67 -0.23 1.97 16 11 H 0.11 2.19 7.05 -51.93 -0.37 1.83 16 12 C -0.14 -2.46 6.49 -24.89 -0.16 -2.62 16 13 C 0.12 2.70 4.58 -3.06 -0.01 2.69 16 14 N -0.61 -15.29 3.38 -169.92 -0.57 -15.86 16 15 C -0.34 -9.88 10.42 -15.06 -0.16 -10.04 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 17 C -0.01 -0.30 5.44 -17.43 -0.09 -0.40 16 18 N -0.91 -28.52 13.70 55.49 0.76 -27.76 16 19 Si 1.04 26.46 24.97 -169.99 -4.25 22.22 16 20 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 21 H -0.28 -6.42 5.08 56.52 0.29 -6.14 16 22 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 23 C 0.14 2.84 6.79 -2.40 -0.02 2.83 16 24 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 25 H 0.08 0.97 5.92 -51.93 -0.31 0.66 16 26 H 0.07 0.95 6.36 -51.93 -0.33 0.62 16 27 H 0.17 1.66 8.00 -52.49 -0.42 1.24 16 28 H 0.19 0.71 8.06 -52.48 -0.42 0.29 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.15 6.48 -51.93 -0.34 0.81 16 31 H 0.03 0.66 4.78 -51.93 -0.25 0.41 16 32 H 0.05 1.10 6.61 -51.93 -0.34 0.76 16 33 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 34 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -33.91 292.74 -7.36 -41.27 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.09 Total: -2.09 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.91 Total: 2.00 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.13 Total: -58.74 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -4.25 Total: 22.22 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.49 Total: 0.75 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.91 -7.36 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033182728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.906 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds