Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99703 * 2 1 4 4 O 1.21576 * 119.99769 * 185.76058 * 3 2 1 5 5 C 1.47690 * 119.99970 * 5.75564 * 3 2 1 6 6 C 1.39493 * 122.10136 * 186.72721 * 5 3 2 7 7 C 1.34994 * 111.68031 * 179.78518 * 6 5 3 8 8 S 1.71759 * 105.45479 * 0.43716 * 7 6 5 9 9 N 1.30608 * 122.10453 * 7.02133 * 5 3 2 10 10 C 1.46493 * 120.00287 * 179.97438 * 2 1 3 11 11 H 1.08994 * 110.88950 * 183.88737 * 10 2 1 12 12 C 1.55154 * 111.00354 * 59.99933 * 10 2 1 13 13 C 1.54332 * 102.94316 * 206.42457 * 12 10 2 14 14 N 1.47023 * 107.27004 * 22.19406 * 13 12 10 15 15 C 1.36936 * 125.64966 * 181.01960 * 14 13 12 16 16 H 1.07992 * 120.00187 * 174.74624 * 15 14 13 17 17 C 1.38814 * 119.99513 * 354.75213 * 15 14 13 18 18 N 1.31619 * 119.99553 * 212.03401 * 17 15 14 19 19 Si 1.86797 * 120.00459 * 32.30672 * 17 15 14 20 20 H 1.48499 * 109.47115 * 174.08565 * 19 17 15 21 21 H 1.48503 * 109.46686 * 294.08516 * 19 17 15 22 22 H 1.48495 * 109.46929 * 54.08152 * 19 17 15 23 23 C 1.47430 * 108.70085 * 1.28926 * 14 13 12 24 24 H 1.08997 * 109.47701 * 275.63618 * 1 2 3 25 25 H 1.09007 * 109.47115 * 35.63556 * 1 2 3 26 26 H 1.09003 * 109.46913 * 155.62855 * 1 2 3 27 27 H 1.07998 * 124.15543 * 359.97438 * 6 5 3 28 28 H 1.08003 * 127.27449 * 180.16839 * 7 6 5 29 29 H 1.09003 * 110.72120 * 88.06908 * 12 10 2 30 30 H 1.08993 * 110.87627 * 324.85976 * 12 10 2 31 31 H 1.08997 * 109.88442 * 262.77588 * 13 12 10 32 32 H 1.08994 * 110.00949 * 141.68538 * 13 12 10 33 33 H 0.96997 * 120.00070 * 5.28165 * 18 17 15 34 34 H 1.09001 * 110.36694 * 94.48237 * 23 14 13 35 35 H 1.09002 * 110.36130 * 216.80272 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3500 1.1700 -0.1057 5 6 1.4059 2.4431 0.1283 6 6 2.0397 3.6786 -0.0039 7 6 1.1729 4.7024 0.1474 8 16 -0.3506 3.9709 0.4537 9 7 0.1246 2.4854 0.3782 10 6 2.1975 -1.2686 0.0006 11 1 3.2716 -1.0971 0.0695 12 6 1.8484 -2.1129 -1.2534 13 6 2.1064 -3.5588 -0.7795 14 7 2.0265 -3.5578 0.6886 15 6 2.2161 -4.6452 1.4990 16 1 2.2197 -4.5247 2.5722 17 6 2.4039 -5.9022 0.9409 18 7 1.9749 -6.9738 1.5735 19 14 3.2720 -6.0738 -0.7042 20 1 3.4725 -7.5130 -1.0103 21 1 2.4435 -5.4520 -1.7682 22 1 4.5900 -5.3926 -0.6416 23 6 1.7020 -2.1934 1.1433 24 1 -0.3634 0.1009 1.0226 25 1 -0.3634 0.8353 -0.5988 26 1 -0.3633 -0.9361 -0.4241 27 1 3.0936 3.8010 -0.2057 28 1 1.3921 5.7586 0.0923 29 1 2.5044 -1.8571 -2.0855 30 1 0.8034 -1.9795 -1.5329 31 1 3.0981 -3.8815 -1.0965 32 1 1.3502 -4.2269 -1.1914 33 1 1.4608 -6.8812 2.3908 34 1 0.6262 -2.0857 1.2822 35 1 2.2296 -1.9669 2.0698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033182728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = 43.204602 kcal Electronic energy + Delta-G solvation = -19870.124950 eV Core-core repulsion = 16803.136577 eV Total energy + Delta-G solvation = -3066.988373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79938 -40.00456 -38.83601 -36.50500 -34.46054 -32.58018 -31.35692 -29.95116 -28.17599 -27.40356 -25.64330 -23.20930 -22.56449 -21.37842 -20.39056 -19.56907 -19.49712 -18.35000 -17.67605 -17.08473 -16.85679 -15.93155 -15.61368 -15.32577 -15.13384 -14.98356 -14.38299 -14.25602 -14.21839 -14.00511 -13.83771 -13.47577 -13.07038 -13.01219 -12.48531 -12.41805 -12.19998 -11.95813 -11.85668 -11.54078 -11.06529 -10.95603 -10.78728 -10.52949 -9.94238 -9.65619 -9.19315 -8.71221 -5.41360 -0.43691 0.55837 0.70990 0.81536 1.42748 1.52758 1.72462 1.80910 2.05541 2.55313 2.93972 3.33885 3.41667 3.69694 3.75339 3.81899 3.99169 4.19939 4.28314 4.39810 4.42197 4.56235 4.65130 4.67105 4.80360 4.83725 4.86716 4.93741 5.07706 5.12791 5.19739 5.44715 5.56907 6.05572 6.21510 6.77850 6.89519 7.42220 8.08265 8.78034 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042780 B = 0.003935 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.357819 B = 7114.478718 C = 7358.525099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.584 5.584 3 C 0.581 3.419 4 O -0.570 6.570 5 C 0.028 3.972 6 C -0.155 4.155 7 C -0.263 4.263 8 S 0.528 5.472 9 N -0.537 5.537 10 C 0.134 3.866 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.112 3.888 14 N -0.628 5.628 15 C -0.336 4.336 16 H 0.048 0.952 17 C -0.062 4.062 18 N -0.940 5.940 19 Si 1.078 2.922 20 H -0.306 1.306 21 H -0.236 1.236 22 H -0.290 1.290 23 C 0.136 3.864 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.168 0.832 28 H 0.222 0.778 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.252 0.748 34 H 0.043 0.957 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 28.320 -7.090 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.314 5.314 3 C 0.366 3.634 4 O -0.449 6.449 5 C -0.144 4.144 6 C -0.187 4.187 7 C -0.411 4.411 8 S 0.683 5.317 9 N -0.375 5.375 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.162 4.162 13 C -0.012 4.012 14 N -0.356 5.356 15 C -0.464 4.464 16 H 0.066 0.934 17 C -0.258 4.258 18 N -0.582 5.582 19 Si 0.905 3.095 20 H -0.235 1.235 21 H -0.160 1.160 22 H -0.218 1.218 23 C 0.009 3.991 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.185 0.815 28 H 0.239 0.761 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.314 26.858 -7.747 29.163 hybrid contribution 1.703 0.430 1.578 2.361 sum -6.611 27.289 -6.168 28.748 Atomic orbital electron populations 1.22080 0.76736 1.03355 1.03017 1.47630 1.08677 1.04334 1.70802 1.17837 0.86111 0.83148 0.76278 1.90765 1.14719 1.87193 1.52206 1.20842 0.89111 0.95452 1.08983 1.21436 1.03724 0.89394 1.04181 1.27586 1.00582 1.06656 1.06293 1.80381 1.10254 0.89151 1.51900 1.72538 1.16369 1.25313 1.23259 1.22180 0.96898 0.82021 0.95979 0.89017 1.22898 1.03769 0.92338 0.97168 1.22046 0.98140 0.96964 0.84075 1.44791 1.83462 1.05506 1.01843 1.19861 1.50252 0.86783 0.89489 0.93425 1.26860 1.00754 0.90434 1.07766 1.71023 1.36507 1.31147 1.19474 0.83894 0.76890 0.74171 0.74592 1.23480 1.16004 1.21802 1.21872 0.98092 0.83843 0.95287 0.92211 0.88377 0.90619 0.81496 0.76085 0.88779 0.88556 0.95717 0.93891 0.93950 0.93903 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.20 7.74 127.77 0.99 3.19 16 2 N -0.58 -17.78 2.91 -817.99 -2.38 -20.16 16 3 C 0.58 18.24 7.65 86.74 0.66 18.90 16 4 O -0.57 -21.46 16.08 -3.96 -0.06 -21.52 16 5 C 0.03 0.67 6.42 42.13 0.27 0.94 16 6 C -0.16 -2.86 9.98 21.83 0.22 -2.64 16 7 C -0.26 -2.66 11.40 67.07 0.76 -1.89 16 8 S 0.53 5.59 23.20 -56.49 -1.31 4.28 16 9 N -0.54 -10.63 7.53 -75.31 -0.57 -11.20 16 10 C 0.13 4.80 3.45 46.46 0.16 4.96 16 11 H 0.09 3.66 7.05 -2.39 -0.02 3.64 16 12 C -0.12 -4.05 6.49 31.78 0.21 -3.84 16 13 C 0.11 4.82 4.58 86.73 0.40 5.21 16 14 N -0.63 -31.75 3.38 -691.52 -2.34 -34.09 16 15 C -0.34 -20.18 10.42 84.03 0.88 -19.31 16 16 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 17 C -0.06 -3.78 5.44 84.86 0.46 -3.32 16 18 N -0.94 -61.00 13.70 21.65 0.30 -60.71 16 19 Si 1.08 53.47 24.97 68.60 1.71 55.18 16 20 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 21 H -0.24 -10.08 5.08 99.48 0.51 -9.57 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 C 0.14 5.72 6.79 86.93 0.59 6.31 16 24 H 0.06 1.46 8.03 -2.39 -0.02 1.44 16 25 H 0.10 2.08 5.92 -2.38 -0.01 2.07 16 26 H 0.08 1.78 6.36 -2.39 -0.02 1.76 16 27 H 0.17 3.10 8.00 -2.91 -0.02 3.08 16 28 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 29 H 0.09 2.72 8.14 -2.39 -0.02 2.71 16 30 H 0.10 2.72 6.48 -2.39 -0.02 2.70 16 31 H 0.03 1.11 4.78 -2.39 -0.01 1.09 16 32 H 0.04 1.89 6.61 -2.39 -0.02 1.88 16 33 H 0.25 16.37 8.73 -92.71 -0.81 15.56 16 34 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 35 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.80 292.74 1.82 -74.97 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.88 Total: 4.73 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.60 Total: 8.51 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -4.99 Total: -126.14 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.71 Total: 55.18 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.31 Total: 4.28 kcal Total: -76.80 1.82 -74.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033182728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.176 kcal (2) G-P(sol) polarization free energy of solvation -76.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds