Wall clock time and date at job start Tue Mar 31 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99748 * 2 1 4 4 O 1.21575 * 120.00204 * 176.84092 * 3 2 1 5 5 C 1.47695 * 120.00201 * 356.83900 * 3 2 1 6 6 C 1.39487 * 122.10670 * 186.47032 * 5 3 2 7 7 C 1.35001 * 111.68480 * 179.97438 * 6 5 3 8 8 S 1.71762 * 105.45220 * 359.97438 * 7 6 5 9 9 N 1.30608 * 122.09973 * 6.18216 * 5 3 2 10 10 C 1.46495 * 119.99965 * 179.97438 * 2 1 3 11 11 H 1.09003 * 110.63873 * 181.68698 * 10 2 1 12 12 C 1.55155 * 110.72180 * 305.02255 * 10 2 1 13 13 C 1.55130 * 101.48207 * 82.69901 * 12 10 2 14 14 N 1.47421 * 104.72303 * 37.29533 * 13 12 10 15 15 C 1.36945 * 125.64767 * 155.81906 * 14 13 12 16 16 H 1.07995 * 119.99733 * 185.40390 * 15 14 13 17 17 C 1.38813 * 119.99854 * 5.40476 * 15 14 13 18 18 N 1.31609 * 120.00227 * 34.90942 * 17 15 14 19 19 Si 1.86799 * 119.99575 * 214.90691 * 17 15 14 20 20 H 1.48498 * 109.46918 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47420 * 299.99856 * 19 17 15 22 22 H 1.48503 * 109.47081 * 60.00449 * 19 17 15 23 23 C 1.47018 * 108.70266 * 335.55135 * 14 13 12 24 24 H 1.09004 * 109.47195 * 275.65133 * 1 2 3 25 25 H 1.09004 * 109.47373 * 35.65645 * 1 2 3 26 26 H 1.08997 * 109.46870 * 155.65170 * 1 2 3 27 27 H 1.07997 * 124.15360 * 0.02562 * 6 5 3 28 28 H 1.07998 * 127.27098 * 180.02562 * 7 6 5 29 29 H 1.09002 * 111.00234 * 200.93569 * 12 10 2 30 30 H 1.08995 * 111.00730 * 324.75022 * 12 10 2 31 31 H 1.08999 * 110.49609 * 278.45175 * 13 12 10 32 32 H 1.08999 * 110.34208 * 156.05860 * 13 12 10 33 33 H 0.97007 * 119.99982 * 355.44555 * 18 17 15 34 34 H 1.09005 * 109.88395 * 120.70680 * 23 14 13 35 35 H 1.09006 * 109.88167 * 241.87003 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3532 1.1681 0.0580 5 6 1.4020 2.4453 -0.0705 6 6 2.0545 3.6707 -0.2065 7 6 1.1808 4.6989 -0.2497 8 16 -0.3748 3.9838 -0.1124 9 7 0.0982 2.4988 -0.0150 10 6 2.1975 -1.2687 0.0006 11 1 3.2726 -1.0916 0.0305 12 6 1.7507 -2.1600 1.1894 13 6 0.4680 -2.8183 0.6168 14 7 0.7746 -3.0624 -0.8044 15 6 0.1812 -4.0077 -1.5980 16 1 0.5366 -4.1674 -2.6052 17 6 -0.8771 -4.7604 -1.1077 18 7 -1.7428 -4.2169 -0.2787 19 14 -1.0724 -6.5447 -1.6247 20 1 -2.2718 -7.1223 -0.9666 21 1 -1.2327 -6.6182 -3.0992 22 1 0.1322 -7.3124 -1.2188 23 6 1.8183 -2.1186 -1.2304 24 1 -0.3634 0.1012 1.0227 25 1 -0.3634 0.8350 -0.5991 26 1 -0.3633 -0.9362 -0.4237 27 1 3.1267 3.7828 -0.2703 28 1 1.4113 5.7492 -0.3502 29 1 2.5077 -2.9089 1.4222 30 1 1.5200 -1.5551 2.0662 31 1 -0.3822 -2.1429 0.7109 32 1 0.2645 -3.7592 1.1280 33 1 -1.6051 -3.3116 0.0416 34 1 2.6910 -2.6666 -1.5856 35 1 1.4350 -1.4745 -2.0218 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033182729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:10 Heat of formation + Delta-G solvation = 44.187161 kcal Electronic energy + Delta-G solvation = -20208.046471 eV Core-core repulsion = 17141.100704 eV Total energy + Delta-G solvation = -3066.945767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.90104 -40.12652 -38.83855 -36.26066 -34.22239 -32.51087 -31.07033 -29.91139 -28.15728 -27.19554 -25.95828 -23.35043 -22.11160 -21.38247 -20.33660 -19.68242 -19.56413 -18.29182 -17.67439 -16.95027 -16.38982 -15.97953 -15.61714 -15.33066 -15.12109 -14.92463 -14.50172 -14.27469 -14.14281 -13.69829 -13.64851 -13.47511 -12.77448 -12.62872 -12.44926 -12.32643 -12.14707 -11.99795 -11.85578 -11.78028 -11.67123 -10.90509 -10.74697 -10.36351 -9.96142 -9.66829 -9.03379 -8.45628 -5.23859 -0.46250 0.53377 0.70119 0.79966 1.57300 1.65904 1.82899 1.85046 2.04352 2.60682 3.16863 3.33271 3.50042 3.65912 3.77941 3.82887 4.10686 4.25217 4.38760 4.40545 4.44365 4.54903 4.58283 4.74188 4.83297 4.85075 4.90400 4.94668 5.09319 5.16560 5.24346 5.49648 5.64576 6.19833 6.31691 6.85391 6.87465 7.71588 8.28410 8.97551 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030824 B = 0.004450 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.168774 B = 6291.263655 C = 6818.538394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.580 5.580 3 C 0.582 3.418 4 O -0.565 6.565 5 C 0.027 3.973 6 C -0.152 4.152 7 C -0.256 4.256 8 S 0.511 5.489 9 N -0.543 5.543 10 C 0.135 3.865 11 H 0.115 0.885 12 C -0.128 4.128 13 C 0.140 3.860 14 N -0.619 5.619 15 C -0.361 4.361 16 H 0.061 0.939 17 C -0.071 4.071 18 N -0.938 5.938 19 Si 1.117 2.883 20 H -0.290 1.290 21 H -0.276 1.276 22 H -0.283 1.283 23 C 0.131 3.869 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.174 0.826 28 H 0.226 0.774 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.042 0.958 35 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 19.674 2.191 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.310 5.310 3 C 0.367 3.633 4 O -0.444 6.444 5 C -0.144 4.144 6 C -0.184 4.184 7 C -0.405 4.405 8 S 0.667 5.333 9 N -0.380 5.380 10 C 0.031 3.969 11 H 0.133 0.867 12 C -0.167 4.167 13 C 0.015 3.985 14 N -0.347 5.347 15 C -0.488 4.488 16 H 0.079 0.921 17 C -0.268 4.268 18 N -0.581 5.581 19 Si 0.942 3.058 20 H -0.217 1.217 21 H -0.202 1.202 22 H -0.210 1.210 23 C 0.005 3.995 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.191 0.809 28 H 0.243 0.757 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 1.689 17.994 2.388 18.230 hybrid contribution 2.710 1.017 -0.362 2.917 sum 4.399 19.010 2.026 19.618 Atomic orbital electron populations 1.22379 0.77903 1.03449 1.02472 1.47718 1.08103 1.04969 1.70235 1.17788 0.86244 0.82936 0.76332 1.90728 1.13744 1.87196 1.52769 1.21004 0.88280 0.95988 1.09169 1.21444 1.03878 0.89115 1.03992 1.27603 1.00056 1.06626 1.06227 1.80454 1.09248 0.90163 1.53405 1.72672 1.16684 1.24415 1.24255 1.22038 0.97317 0.82172 0.95349 0.86678 1.23087 0.98164 0.98570 0.96853 1.21751 0.95132 0.96876 0.84735 1.44805 1.43601 1.39309 1.07030 1.19915 1.17300 1.13428 0.98197 0.92096 1.26991 0.91803 1.07664 1.00300 1.70977 1.30786 1.17436 1.38900 0.82790 0.75779 0.71265 0.75960 1.21655 1.20232 1.20980 1.21665 0.92068 0.90790 0.94946 0.92426 0.87718 0.92154 0.80892 0.75732 0.89088 0.89636 0.95645 0.95874 0.92999 0.94013 0.96793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.95 7.72 127.77 0.99 3.93 16 2 N -0.58 -20.94 2.82 -819.54 -2.31 -23.25 16 3 C 0.58 20.11 7.66 86.74 0.66 20.77 16 4 O -0.56 -21.49 16.05 -3.95 -0.06 -21.56 16 5 C 0.03 0.76 6.51 42.13 0.27 1.04 16 6 C -0.15 -3.17 9.98 21.83 0.22 -2.95 16 7 C -0.26 -3.30 11.41 67.07 0.77 -2.54 16 8 S 0.51 7.79 23.20 -56.49 -1.31 6.48 16 9 N -0.54 -13.90 7.29 -75.28 -0.55 -14.44 16 10 C 0.14 5.09 3.58 46.18 0.17 5.26 16 11 H 0.12 4.16 6.99 -2.39 -0.02 4.14 16 12 C -0.13 -4.75 6.54 32.06 0.21 -4.54 16 13 C 0.14 6.60 4.28 86.93 0.37 6.97 16 14 N -0.62 -32.03 2.96 -691.56 -2.04 -34.07 16 15 C -0.36 -20.82 10.01 84.03 0.84 -19.98 16 16 H 0.06 3.54 8.02 -2.91 -0.02 3.51 16 17 C -0.07 -4.08 4.96 84.86 0.42 -3.66 16 18 N -0.94 -57.30 12.95 21.65 0.28 -57.02 16 19 Si 1.12 51.79 30.03 68.60 2.06 53.85 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.13 5.80 6.29 86.73 0.55 6.34 16 24 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.11 3.55 5.20 -2.39 -0.01 3.54 16 26 H 0.06 2.63 4.76 -2.39 -0.01 2.61 16 27 H 0.17 3.41 8.00 -2.91 -0.02 3.39 16 28 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 29 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.03 1.26 4.44 -2.39 -0.01 1.25 16 32 H 0.02 1.21 7.48 -2.39 -0.02 1.19 16 33 H 0.26 15.81 5.75 -92.70 -0.53 15.28 16 34 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.01 0.65 8.04 -2.38 -0.02 0.64 16 Total: -1.00 -71.95 294.87 2.88 -69.07 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.35 Total: 10.31 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.46 Total: 10.63 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -4.63 Total: -128.79 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.85 kcal Atomic # 16 Polarization: 7.79 SS G_CDS: -1.31 Total: 6.48 kcal Total: -71.95 2.88 -69.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033182729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.261 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds