Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34769 * 119.99786 * 2 1 4 4 O 1.21630 * 119.99503 * 174.06891 * 3 2 1 5 5 C 1.47248 * 120.00819 * 354.07584 * 3 2 1 6 6 N 1.30552 * 125.54808 * 173.04481 * 5 3 2 7 7 C 1.30703 * 115.90812 * 180.02562 * 6 5 3 8 8 C 1.34227 * 115.78565 * 359.97438 * 7 6 5 9 9 S 1.71076 * 109.09107 * 359.73160 * 8 7 6 10 10 C 1.46501 * 119.99379 * 180.27861 * 2 1 3 11 11 H 1.09002 * 110.63497 * 178.03740 * 10 2 1 12 12 C 1.55152 * 110.72267 * 54.70318 * 10 2 1 13 13 C 1.54908 * 101.57967 * 277.13343 * 12 10 2 14 14 N 1.47426 * 104.83205 * 322.99064 * 13 12 10 15 15 C 1.36939 * 125.64564 * 204.09244 * 14 13 12 16 16 H 1.07999 * 119.99491 * 163.97373 * 15 14 13 17 17 C 1.38810 * 120.00127 * 343.97012 * 15 14 13 18 18 N 1.31619 * 120.00249 * 351.26795 * 17 15 14 19 19 Si 1.86804 * 119.99817 * 171.26916 * 17 15 14 20 20 H 1.48502 * 109.46882 * 94.95943 * 19 17 15 21 21 H 1.48500 * 109.47124 * 214.95929 * 19 17 15 22 22 H 1.48499 * 109.47070 * 334.96110 * 19 17 15 23 23 C 1.47017 * 108.70447 * 24.13022 * 14 13 12 24 24 H 1.08999 * 109.46960 * 85.02347 * 1 2 3 25 25 H 1.09001 * 109.47143 * 205.03002 * 1 2 3 26 26 H 1.09003 * 109.46550 * 325.02522 * 1 2 3 27 27 H 1.08006 * 122.10810 * 180.02562 * 7 6 5 28 28 H 1.08002 * 125.45745 * 180.02562 * 8 7 6 29 29 H 1.09001 * 111.00657 * 35.20484 * 12 10 2 30 30 H 1.09002 * 111.00380 * 159.06411 * 12 10 2 31 31 H 1.09003 * 110.36981 * 204.14898 * 13 12 10 32 32 H 1.09005 * 110.46025 * 81.87666 * 13 12 10 33 33 H 0.96993 * 120.00210 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.87987 * 239.52237 * 23 14 13 35 35 H 1.08999 * 109.88316 * 118.35544 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3503 1.1699 0.1088 5 6 1.4087 2.4390 -0.1316 6 7 1.9315 3.6298 -0.0171 7 6 1.1071 4.6325 -0.1693 8 6 -0.1695 4.3054 -0.4241 9 16 -0.3105 2.6013 -0.4769 10 6 2.1975 -1.2688 -0.0062 11 1 3.2725 -1.0917 -0.0402 12 6 1.7457 -2.1577 -1.1949 13 6 0.4693 -2.8208 -0.6198 14 7 0.7778 -3.0641 0.8011 15 6 0.1877 -4.0109 1.5951 16 1 0.6458 -4.2916 2.5320 17 6 -0.9991 -4.6099 1.1958 18 7 -1.6472 -4.1512 0.1461 19 14 -1.6766 -6.0670 2.1484 20 1 -2.6661 -5.5885 3.1471 21 1 -2.3371 -7.0086 1.2091 22 1 -0.5653 -6.7620 2.8464 23 6 1.8233 -2.1212 1.2247 24 1 -0.3633 0.0891 -1.0238 25 1 -0.3633 -0.9312 0.4348 26 1 -0.3632 0.8421 0.5891 27 1 1.4328 5.6597 -0.0956 28 1 -0.9773 5.0058 -0.5765 29 1 1.5106 -1.5508 -2.0693 30 1 2.5017 -2.9062 -1.4324 31 1 0.2677 -3.7622 -1.1309 32 1 -0.3841 -2.1490 -0.7131 33 1 -2.4763 -4.5699 -0.1332 34 1 2.6975 -2.6700 1.5751 35 1 1.4434 -1.4787 2.0190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033522977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 60.769437 kcal Electronic energy + Delta-G solvation = -20112.100661 eV Core-core repulsion = 17045.873956 eV Total energy + Delta-G solvation = -3066.226705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29148 -39.30816 -37.38158 -34.58722 -32.31754 -30.61100 -29.28668 -28.23705 -26.90054 -25.85390 -24.28355 -22.39800 -20.33799 -19.68029 -19.29855 -18.26382 -17.00791 -16.66955 -16.23526 -15.66839 -15.19886 -14.76594 -14.30355 -14.00223 -13.89675 -13.50693 -13.06953 -12.89303 -12.60095 -12.41122 -11.89432 -11.69382 -11.22065 -11.06734 -10.95173 -10.87750 -10.55753 -10.17028 -10.07931 -10.00551 -9.79052 -9.72625 -9.54899 -8.96457 -8.67243 -8.42925 -6.85462 -5.85555 -3.20109 0.18891 1.12211 1.61910 2.33157 2.84128 3.25638 3.34526 3.41546 3.43138 4.19413 4.43172 4.79103 4.96243 5.17053 5.24248 5.29071 5.34920 5.40553 5.58532 5.65199 5.76168 5.88988 6.05713 6.19303 6.21904 6.45130 6.49077 6.64095 6.87294 7.31579 7.34233 7.46417 7.57796 7.69440 8.14652 8.17107 9.09862 9.70966 10.39231 11.28172 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.004697 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.705758 B = 5959.465711 C = 6480.291418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.583 5.583 3 C 0.590 3.410 4 O -0.511 6.511 5 C -0.005 4.005 6 N -0.405 5.405 7 C 0.023 3.977 8 C -0.299 4.299 9 S 0.220 5.780 10 C 0.130 3.870 11 H 0.105 0.895 12 C -0.157 4.157 13 C 0.164 3.836 14 N -0.601 5.601 15 C -0.232 4.232 16 H 0.074 0.926 17 C -0.001 4.001 18 N -0.917 5.917 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.125 3.875 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.064 0.936 27 H 0.174 0.826 28 H 0.179 0.821 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.254 0.746 34 H 0.037 0.963 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 13.238 -3.560 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.316 5.316 3 C 0.373 3.627 4 O -0.386 6.386 5 C -0.281 4.281 6 N -0.121 5.121 7 C -0.133 4.133 8 C -0.439 4.439 9 S 0.475 5.525 10 C 0.027 3.973 11 H 0.123 0.877 12 C -0.196 4.196 13 C 0.039 3.961 14 N -0.328 5.328 15 C -0.360 4.360 16 H 0.092 0.908 17 C -0.199 4.199 18 N -0.563 5.563 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.002 4.002 24 H 0.084 0.916 25 H 0.151 0.849 26 H 0.082 0.918 27 H 0.191 0.809 28 H 0.196 0.804 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.394 12.441 -3.571 12.949 hybrid contribution -0.443 0.493 0.525 0.846 sum -0.049 12.934 -3.046 13.288 Atomic orbital electron populations 1.22460 0.79169 1.05566 1.02390 1.47609 1.07286 1.05156 1.71512 1.16762 0.86453 0.81392 0.78066 1.90816 1.12703 1.86023 1.49082 1.27584 0.93906 0.96714 1.09898 1.66615 1.35967 0.97482 1.12054 1.21763 0.88497 0.99549 1.03504 1.27303 1.02687 1.04309 1.09645 1.84748 1.09828 0.97442 1.60451 1.22237 0.96489 0.81130 0.97445 0.87669 1.23373 1.01458 0.98513 0.96280 1.21597 0.91250 0.98886 0.84378 1.44493 1.43378 1.37751 1.07160 1.18989 1.02273 1.12614 1.02158 0.90780 1.24855 0.96217 1.00260 0.98526 1.69914 1.17249 1.41927 1.27221 0.86147 0.78795 0.82185 0.78886 1.21564 1.21620 1.20549 1.21681 0.93215 0.91363 0.93938 0.91556 0.84926 0.91822 0.80946 0.80398 0.91642 0.90565 0.92131 0.93996 0.93613 0.94478 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 7.06 59.85 0.42 1.15 16 2 N -0.58 -9.69 2.82 -173.16 -0.49 -10.18 16 3 C 0.59 10.33 7.65 -12.60 -0.10 10.24 16 4 O -0.51 -10.47 16.46 5.25 0.09 -10.39 16 5 C -0.01 -0.08 7.19 -14.44 -0.10 -0.19 16 6 N -0.41 -6.28 10.60 -11.51 -0.12 -6.40 16 7 C 0.02 0.27 11.24 -19.45 -0.22 0.05 16 8 C -0.30 -2.91 11.09 29.32 0.33 -2.59 16 9 S 0.22 2.46 18.09 -107.50 -1.94 0.51 16 10 C 0.13 2.29 3.58 -66.10 -0.24 2.05 16 11 H 0.11 1.85 7.01 -51.93 -0.36 1.48 16 12 C -0.16 -2.74 6.52 -24.59 -0.16 -2.90 16 13 C 0.16 3.53 4.47 -2.53 -0.01 3.52 16 14 N -0.60 -14.14 2.97 -170.07 -0.51 -14.64 16 15 C -0.23 -6.09 10.21 -15.06 -0.15 -6.24 16 16 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 17 C 0.00 -0.03 5.39 -17.43 -0.09 -0.13 16 18 N -0.92 -24.90 10.91 55.49 0.61 -24.30 16 19 Si 0.91 21.05 29.56 -169.99 -5.03 16.02 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.12 2.51 6.30 -3.07 -0.02 2.49 16 24 H 0.07 0.89 7.55 -51.93 -0.39 0.50 16 25 H 0.13 2.47 4.83 -51.93 -0.25 2.21 16 26 H 0.06 0.86 5.05 -27.27 -0.14 0.72 16 27 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 28 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.49 7.33 -51.93 -0.38 1.10 16 32 H 0.04 0.93 5.34 -51.93 -0.28 0.65 16 33 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.64 8.04 -51.93 -0.42 0.22 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -30.58 295.30 -7.17 -37.75 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.88 Total: -0.30 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.35 Total: 7.47 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.51 Total: -55.52 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.94 Total: 0.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.58 -7.17 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033522977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.523 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds