Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34769 * 119.99786 * 2 1 4 4 O 1.21630 * 119.99503 * 174.06891 * 3 2 1 5 5 C 1.47248 * 120.00819 * 354.07584 * 3 2 1 6 6 N 1.30552 * 125.54808 * 173.04481 * 5 3 2 7 7 C 1.30703 * 115.90812 * 180.02562 * 6 5 3 8 8 C 1.34227 * 115.78565 * 359.97438 * 7 6 5 9 9 S 1.71076 * 109.09107 * 359.73160 * 8 7 6 10 10 C 1.46501 * 119.99379 * 180.27861 * 2 1 3 11 11 H 1.09002 * 110.63497 * 178.03740 * 10 2 1 12 12 C 1.55152 * 110.72267 * 54.70318 * 10 2 1 13 13 C 1.54908 * 101.57967 * 277.13343 * 12 10 2 14 14 N 1.47426 * 104.83205 * 322.99064 * 13 12 10 15 15 C 1.36939 * 125.64564 * 204.09244 * 14 13 12 16 16 H 1.07999 * 119.99491 * 163.97373 * 15 14 13 17 17 C 1.38810 * 120.00127 * 343.97012 * 15 14 13 18 18 N 1.31619 * 120.00249 * 351.26795 * 17 15 14 19 19 Si 1.86804 * 119.99817 * 171.26916 * 17 15 14 20 20 H 1.48502 * 109.46882 * 94.95943 * 19 17 15 21 21 H 1.48500 * 109.47124 * 214.95929 * 19 17 15 22 22 H 1.48499 * 109.47070 * 334.96110 * 19 17 15 23 23 C 1.47017 * 108.70447 * 24.13022 * 14 13 12 24 24 H 1.08999 * 109.46960 * 85.02347 * 1 2 3 25 25 H 1.09001 * 109.47143 * 205.03002 * 1 2 3 26 26 H 1.09003 * 109.46550 * 325.02522 * 1 2 3 27 27 H 1.08006 * 122.10810 * 180.02562 * 7 6 5 28 28 H 1.08002 * 125.45745 * 180.02562 * 8 7 6 29 29 H 1.09001 * 111.00657 * 35.20484 * 12 10 2 30 30 H 1.09002 * 111.00380 * 159.06411 * 12 10 2 31 31 H 1.09003 * 110.36981 * 204.14898 * 13 12 10 32 32 H 1.09005 * 110.46025 * 81.87666 * 13 12 10 33 33 H 0.96993 * 120.00210 * 179.97438 * 18 17 15 34 34 H 1.08999 * 109.87987 * 239.52237 * 23 14 13 35 35 H 1.08999 * 109.88316 * 118.35544 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3503 1.1699 0.1088 5 6 1.4087 2.4390 -0.1316 6 7 1.9315 3.6298 -0.0171 7 6 1.1071 4.6325 -0.1693 8 6 -0.1695 4.3054 -0.4241 9 16 -0.3105 2.6013 -0.4769 10 6 2.1975 -1.2688 -0.0062 11 1 3.2725 -1.0917 -0.0402 12 6 1.7457 -2.1577 -1.1949 13 6 0.4693 -2.8208 -0.6198 14 7 0.7778 -3.0641 0.8011 15 6 0.1877 -4.0109 1.5951 16 1 0.6458 -4.2916 2.5320 17 6 -0.9991 -4.6099 1.1958 18 7 -1.6472 -4.1512 0.1461 19 14 -1.6766 -6.0670 2.1484 20 1 -2.6661 -5.5885 3.1471 21 1 -2.3371 -7.0086 1.2091 22 1 -0.5653 -6.7620 2.8464 23 6 1.8233 -2.1212 1.2247 24 1 -0.3633 0.0891 -1.0238 25 1 -0.3633 -0.9312 0.4348 26 1 -0.3632 0.8421 0.5891 27 1 1.4328 5.6597 -0.0956 28 1 -0.9773 5.0058 -0.5765 29 1 1.5106 -1.5508 -2.0693 30 1 2.5017 -2.9062 -1.4324 31 1 0.2677 -3.7622 -1.1309 32 1 -0.3841 -2.1490 -0.7131 33 1 -2.4763 -4.5699 -0.1332 34 1 2.6975 -2.6700 1.5751 35 1 1.4434 -1.4787 2.0190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033522977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = 40.215846 kcal Electronic energy + Delta-G solvation = -20112.991931 eV Core-core repulsion = 17045.873956 eV Total energy + Delta-G solvation = -3067.117976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55075 -40.43103 -38.89788 -36.12395 -34.10778 -31.75796 -30.89567 -29.74576 -28.13928 -27.25251 -25.96945 -23.57408 -22.09854 -21.00905 -20.33591 -19.49559 -18.84506 -17.90132 -17.49793 -16.91587 -16.69347 -16.28234 -15.71907 -15.51218 -15.16865 -14.58691 -14.37690 -14.25447 -13.99000 -13.88820 -13.54688 -13.34683 -12.93959 -12.73606 -12.46804 -12.27413 -11.99869 -11.88129 -11.84593 -11.63821 -11.30217 -10.73508 -10.67142 -10.61010 -9.89807 -9.80489 -8.77029 -7.86301 -5.21730 -0.79375 0.15337 0.73185 1.27768 1.49879 1.51744 1.59180 1.60375 2.11595 2.52402 3.08404 3.35121 3.69142 3.81129 3.83692 3.96442 4.01015 4.27763 4.32643 4.41501 4.42671 4.60085 4.67936 4.77452 4.92076 5.01393 5.06214 5.08933 5.41881 5.47561 5.63968 5.77809 6.08805 6.24209 6.57940 6.86410 7.12705 7.77085 8.45308 9.25714 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028957 B = 0.004697 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.705758 B = 5959.465711 C = 6480.291418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.582 5.582 3 C 0.591 3.409 4 O -0.553 6.553 5 C -0.057 4.057 6 N -0.436 5.436 7 C 0.005 3.995 8 C -0.269 4.269 9 S 0.269 5.731 10 C 0.139 3.861 11 H 0.109 0.891 12 C -0.140 4.140 13 C 0.171 3.829 14 N -0.616 5.616 15 C -0.247 4.247 16 H 0.071 0.929 17 C -0.047 4.047 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.126 3.874 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.200 0.800 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.250 0.750 34 H 0.039 0.961 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 14.958 -4.018 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.314 5.314 3 C 0.376 3.624 4 O -0.432 6.432 5 C -0.330 4.330 6 N -0.153 5.153 7 C -0.151 4.151 8 C -0.409 4.409 9 S 0.524 5.476 10 C 0.036 3.964 11 H 0.127 0.873 12 C -0.179 4.179 13 C 0.046 3.954 14 N -0.343 5.343 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.242 4.242 18 N -0.584 5.584 19 Si 0.798 3.202 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.201 1.201 23 C 0.000 4.000 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.217 0.783 28 H 0.237 0.763 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.736 14.156 -4.025 14.735 hybrid contribution -0.177 0.095 0.677 0.706 sum -0.913 14.251 -3.347 14.667 Atomic orbital electron populations 1.22406 0.78211 1.04648 1.03665 1.47582 1.07765 1.04716 1.71363 1.17071 0.86145 0.82230 0.76926 1.90772 1.14499 1.86803 1.51090 1.27083 0.96387 0.95674 1.13814 1.66586 1.38126 0.98334 1.12293 1.22208 0.88938 0.99972 1.04009 1.27798 1.03042 1.04010 1.06087 1.84451 1.05997 0.98528 1.58647 1.22034 0.96841 0.81409 0.96111 0.87301 1.23242 0.99439 0.98524 0.96678 1.21459 0.93138 0.97341 0.83444 1.44667 1.43715 1.37966 1.07921 1.19250 1.02583 1.13348 1.02447 0.91164 1.25514 0.96610 1.02475 0.99568 1.70053 1.17314 1.42769 1.28270 0.85223 0.78039 0.79354 0.77596 1.21356 1.21933 1.20056 1.21714 0.92249 0.91090 0.94935 0.89563 0.88240 0.90087 0.78284 0.76286 0.89425 0.89712 0.95558 0.94511 0.94041 0.94287 0.95991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.60 7.06 127.77 0.90 2.50 16 2 N -0.58 -19.14 2.82 -820.01 -2.32 -21.46 16 3 C 0.59 20.65 7.65 86.61 0.66 21.32 16 4 O -0.55 -23.10 16.46 -4.13 -0.07 -23.17 16 5 C -0.06 -1.68 7.19 87.25 0.63 -1.05 16 6 N -0.44 -12.98 10.60 -190.32 -2.02 -15.00 16 7 C 0.00 0.10 11.24 83.94 0.94 1.04 16 8 C -0.27 -4.07 11.09 66.90 0.74 -3.33 16 9 S 0.27 5.21 18.09 -56.49 -1.02 4.19 16 10 C 0.14 4.90 3.58 46.18 0.17 5.07 16 11 H 0.11 3.81 7.01 -2.39 -0.02 3.79 16 12 C -0.14 -4.78 6.52 31.98 0.21 -4.57 16 13 C 0.17 7.46 4.47 86.85 0.39 7.85 16 14 N -0.62 -29.46 2.97 -691.99 -2.06 -31.52 16 15 C -0.25 -13.17 10.21 84.03 0.86 -12.31 16 16 H 0.07 3.70 7.84 -2.91 -0.02 3.67 16 17 C -0.05 -2.49 5.39 84.86 0.46 -2.03 16 18 N -0.94 -51.58 10.91 21.65 0.24 -51.35 16 19 Si 0.97 43.56 29.56 68.60 2.03 45.59 16 20 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.13 5.15 6.30 86.73 0.55 5.70 16 24 H 0.09 2.16 7.55 -2.39 -0.02 2.14 16 25 H 0.10 3.71 4.83 -2.39 -0.01 3.70 16 26 H 0.08 2.06 5.05 -18.07 -0.09 1.96 16 27 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.22 1.47 8.06 -2.91 -0.02 1.44 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.03 1.31 7.33 -2.39 -0.02 1.29 16 32 H 0.04 1.65 5.34 -2.38 -0.01 1.64 16 33 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 Total: -1.00 -67.86 295.30 2.32 -65.54 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.04 Total: 7.01 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.50 Total: 20.16 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -6.15 Total: -119.32 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.02 Total: 4.19 kcal Total: -67.86 2.32 -65.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033522977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.759 kcal (2) G-P(sol) polarization free energy of solvation -67.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds