Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99786 * 2 1 4 4 O 1.21619 * 119.99990 * 176.25084 * 3 2 1 5 5 C 1.47257 * 120.00152 * 356.25388 * 3 2 1 6 6 N 1.30557 * 125.54322 * 5.95662 * 5 3 2 7 7 C 1.30704 * 115.90720 * 179.78353 * 6 5 3 8 8 C 1.34232 * 115.78211 * 0.51852 * 7 6 5 9 9 S 1.71073 * 109.09125 * 359.72393 * 8 7 6 10 10 C 1.46497 * 120.00239 * 180.02562 * 2 1 3 11 11 H 1.08998 * 110.64381 * 176.85322 * 10 2 1 12 12 C 1.55152 * 110.71754 * 299.99668 * 10 2 1 13 13 C 1.54914 * 101.58014 * 153.86291 * 12 10 2 14 14 N 1.47414 * 104.93260 * 322.93477 * 13 12 10 15 15 C 1.36941 * 125.65465 * 204.15693 * 14 13 12 16 16 H 1.07991 * 120.00284 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99454 * 0.02562 * 15 14 13 18 18 N 1.31623 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47155 * 60.00114 * 19 17 15 21 21 H 1.48503 * 109.47296 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47291 * 299.99704 * 19 17 15 23 23 C 1.47298 * 108.55775 * 24.15437 * 14 13 12 24 24 H 1.09006 * 109.46713 * 275.70749 * 1 2 3 25 25 H 1.08997 * 109.47627 * 35.70607 * 1 2 3 26 26 H 1.09001 * 109.47344 * 155.71470 * 1 2 3 27 27 H 1.08006 * 122.10765 * 180.22200 * 7 6 5 28 28 H 1.07999 * 125.45081 * 179.72855 * 8 7 6 29 29 H 1.08995 * 111.00641 * 35.79374 * 12 10 2 30 30 H 1.08997 * 111.04053 * 271.94740 * 12 10 2 31 31 H 1.08999 * 110.36671 * 81.83250 * 13 12 10 32 32 H 1.09002 * 110.36385 * 204.03705 * 13 12 10 33 33 H 0.96994 * 120.00037 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.85518 * 239.50362 * 23 14 13 35 35 H 1.08994 * 109.87578 * 118.35935 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3531 1.1684 0.0689 5 6 1.4049 2.4411 -0.0833 6 7 0.1064 2.5724 -0.0508 7 6 -0.3462 3.7957 -0.1348 8 6 0.5844 4.7556 -0.2545 9 16 2.1358 4.0345 -0.2508 10 6 2.1976 -1.2687 -0.0006 11 1 3.2717 -1.0922 -0.0565 12 6 1.8437 -2.1073 1.2559 13 6 2.1172 -3.5477 0.7555 14 7 1.6772 -3.5510 -0.6514 15 6 1.2874 -4.6541 -1.3633 16 1 0.9815 -4.5513 -2.3938 17 6 1.2856 -5.9042 -0.7600 18 7 1.6590 -6.0296 0.4959 19 14 0.7547 -7.4090 -1.7311 20 1 1.6459 -7.5793 -2.9068 21 1 0.8421 -8.6128 -0.8659 22 1 -0.6455 -7.2315 -2.1929 23 6 1.7273 -2.1701 -1.1616 24 1 -0.3633 0.1022 1.0226 25 1 -0.3634 0.8344 -0.5997 26 1 -0.3634 -0.9367 -0.4227 27 1 -1.4026 4.0197 -0.1143 28 1 0.3856 5.8138 -0.3394 29 1 0.7958 -1.9807 1.5278 30 1 2.4955 -1.8539 2.0919 31 1 3.1810 -3.7764 0.8208 32 1 1.5391 -4.2670 1.3356 33 1 1.6573 -6.9031 0.9175 34 1 0.7357 -1.8614 -1.4924 35 1 2.4332 -2.1064 -1.9897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033522979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = 64.979072 kcal Electronic energy + Delta-G solvation = -19741.563718 eV Core-core repulsion = 16675.519556 eV Total energy + Delta-G solvation = -3066.044162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46426 -39.18593 -37.30407 -34.77956 -32.24482 -30.76642 -29.17848 -27.53610 -27.00568 -25.94899 -24.35236 -22.15530 -20.33617 -20.20044 -19.05682 -18.16478 -16.97111 -16.86030 -16.14167 -15.63227 -15.15829 -14.68237 -14.21397 -14.03700 -13.77344 -13.63758 -13.01000 -12.88966 -12.42150 -12.18844 -11.83439 -11.60109 -11.52521 -11.03621 -10.88226 -10.78731 -10.54974 -10.21860 -10.13374 -9.93423 -9.80744 -9.66532 -9.51495 -9.19100 -8.65505 -8.34323 -6.84877 -5.65162 -3.07783 0.03665 0.91601 1.46697 2.19159 3.11164 3.12868 3.41344 3.45484 3.46881 3.93544 4.49783 4.72005 4.80225 5.06887 5.40376 5.42441 5.50041 5.58099 5.63380 5.75245 5.84637 5.91141 6.24783 6.28469 6.37301 6.54411 6.59644 6.70503 6.93333 7.24353 7.46706 7.53196 7.61493 7.84441 8.11057 8.34949 9.20981 9.81290 10.45857 11.38410 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.003698 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.021031 B = 7569.411806 C = 7798.452235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.570 5.570 3 C 0.589 3.411 4 O -0.535 6.535 5 C -0.006 4.006 6 N -0.421 5.421 7 C 0.025 3.975 8 C -0.286 4.286 9 S 0.243 5.757 10 C 0.124 3.876 11 H 0.106 0.894 12 C -0.150 4.150 13 C 0.153 3.847 14 N -0.602 5.602 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.110 0.890 33 H 0.253 0.747 34 H 0.032 0.968 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 21.111 0.214 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.300 5.300 3 C 0.372 3.628 4 O -0.413 6.413 5 C -0.280 4.280 6 N -0.139 5.139 7 C -0.131 4.131 8 C -0.427 4.427 9 S 0.498 5.502 10 C 0.021 3.979 11 H 0.124 0.876 12 C -0.190 4.190 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.747 3.253 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.001 3.999 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.194 0.806 28 H 0.200 0.800 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.029 20.733 0.250 20.833 hybrid contribution -1.427 -0.382 -0.473 1.551 sum -3.456 20.351 -0.223 20.643 Atomic orbital electron populations 1.22319 0.78160 1.04436 1.02776 1.47683 1.08099 1.04926 1.69285 1.16788 0.86137 0.81775 0.78101 1.90841 1.12383 1.86472 1.51584 1.27862 0.92363 0.98779 1.09014 1.67157 1.10613 1.23143 1.13025 1.21869 1.02170 0.86100 1.03007 1.26884 0.98084 1.06433 1.11306 1.84087 1.06137 0.98544 1.61475 1.22397 0.97015 0.80832 0.97643 0.87633 1.23384 1.00994 0.98813 0.95806 1.21948 0.98161 0.91287 0.85810 1.44480 1.77894 1.01003 1.09501 1.19022 1.36909 0.84621 0.94602 0.90479 1.24790 1.01706 0.97525 0.96524 1.69772 1.53755 1.22558 1.10961 0.86131 0.78376 0.82155 0.78677 1.21200 1.21556 1.21149 1.21591 0.98113 0.86282 0.93879 0.92572 0.88223 0.90336 0.80567 0.80034 0.91607 0.91941 0.96655 0.87215 0.93616 0.94989 0.95493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 8.38 59.85 0.50 1.46 16 2 N -0.57 -9.54 2.89 -173.17 -0.50 -10.04 16 3 C 0.59 9.76 7.66 -12.60 -0.10 9.66 16 4 O -0.54 -10.14 16.33 5.26 0.09 -10.05 16 5 C -0.01 -0.07 7.20 -14.43 -0.10 -0.18 16 6 N -0.42 -5.10 7.00 -11.50 -0.08 -5.18 16 7 C 0.03 0.23 11.24 -19.44 -0.22 0.01 16 8 C -0.29 -2.19 11.09 29.32 0.33 -1.86 16 9 S 0.24 2.42 23.04 -107.50 -2.48 -0.05 16 10 C 0.12 2.38 3.35 -66.10 -0.22 2.16 16 11 H 0.11 2.12 7.01 -51.93 -0.36 1.76 16 12 C -0.15 -2.97 6.66 -24.58 -0.16 -3.13 16 13 C 0.15 3.75 5.88 -2.53 -0.01 3.73 16 14 N -0.60 -15.52 3.40 -169.86 -0.58 -16.10 16 15 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 19 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.13 2.75 6.78 -2.91 -0.02 2.73 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.34 5.28 -51.93 -0.27 1.07 16 26 H 0.08 1.22 6.17 -51.93 -0.32 0.90 16 27 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 29 H 0.07 1.26 7.34 -51.93 -0.38 0.88 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.03 0.67 6.01 -51.93 -0.31 0.36 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -31.46 300.13 -7.79 -39.25 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.04 Total: -0.94 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.26 Total: 7.82 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.60 Total: -57.53 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.48 Total: -0.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.46 -7.79 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033522979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.228 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds