Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99786 * 2 1 4 4 O 1.21619 * 119.99990 * 176.25084 * 3 2 1 5 5 C 1.47257 * 120.00152 * 356.25388 * 3 2 1 6 6 N 1.30557 * 125.54322 * 5.95662 * 5 3 2 7 7 C 1.30704 * 115.90720 * 179.78353 * 6 5 3 8 8 C 1.34232 * 115.78211 * 0.51852 * 7 6 5 9 9 S 1.71073 * 109.09125 * 359.72393 * 8 7 6 10 10 C 1.46497 * 120.00239 * 180.02562 * 2 1 3 11 11 H 1.08998 * 110.64381 * 176.85322 * 10 2 1 12 12 C 1.55152 * 110.71754 * 299.99668 * 10 2 1 13 13 C 1.54914 * 101.58014 * 153.86291 * 12 10 2 14 14 N 1.47414 * 104.93260 * 322.93477 * 13 12 10 15 15 C 1.36941 * 125.65465 * 204.15693 * 14 13 12 16 16 H 1.07991 * 120.00284 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99454 * 0.02562 * 15 14 13 18 18 N 1.31623 * 120.00279 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47155 * 60.00114 * 19 17 15 21 21 H 1.48503 * 109.47296 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47291 * 299.99704 * 19 17 15 23 23 C 1.47298 * 108.55775 * 24.15437 * 14 13 12 24 24 H 1.09006 * 109.46713 * 275.70749 * 1 2 3 25 25 H 1.08997 * 109.47627 * 35.70607 * 1 2 3 26 26 H 1.09001 * 109.47344 * 155.71470 * 1 2 3 27 27 H 1.08006 * 122.10765 * 180.22200 * 7 6 5 28 28 H 1.07999 * 125.45081 * 179.72855 * 8 7 6 29 29 H 1.08995 * 111.00641 * 35.79374 * 12 10 2 30 30 H 1.08997 * 111.04053 * 271.94740 * 12 10 2 31 31 H 1.08999 * 110.36671 * 81.83250 * 13 12 10 32 32 H 1.09002 * 110.36385 * 204.03705 * 13 12 10 33 33 H 0.96994 * 120.00037 * 179.97438 * 18 17 15 34 34 H 1.09002 * 109.85518 * 239.50362 * 23 14 13 35 35 H 1.08994 * 109.87578 * 118.35935 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3531 1.1684 0.0689 5 6 1.4049 2.4411 -0.0833 6 7 0.1064 2.5724 -0.0508 7 6 -0.3462 3.7957 -0.1348 8 6 0.5844 4.7556 -0.2545 9 16 2.1358 4.0345 -0.2508 10 6 2.1976 -1.2687 -0.0006 11 1 3.2717 -1.0922 -0.0565 12 6 1.8437 -2.1073 1.2559 13 6 2.1172 -3.5477 0.7555 14 7 1.6772 -3.5510 -0.6514 15 6 1.2874 -4.6541 -1.3633 16 1 0.9815 -4.5513 -2.3938 17 6 1.2856 -5.9042 -0.7600 18 7 1.6590 -6.0296 0.4959 19 14 0.7547 -7.4090 -1.7311 20 1 1.6459 -7.5793 -2.9068 21 1 0.8421 -8.6128 -0.8659 22 1 -0.6455 -7.2315 -2.1929 23 6 1.7273 -2.1701 -1.1616 24 1 -0.3633 0.1022 1.0226 25 1 -0.3634 0.8344 -0.5997 26 1 -0.3634 -0.9367 -0.4227 27 1 -1.4026 4.0197 -0.1143 28 1 0.3856 5.8138 -0.3394 29 1 0.7958 -1.9807 1.5278 30 1 2.4955 -1.8539 2.0919 31 1 3.1810 -3.7764 0.8208 32 1 1.5391 -4.2670 1.3356 33 1 1.6573 -6.9031 0.9175 34 1 0.7357 -1.8614 -1.4924 35 1 2.4332 -2.1064 -1.9897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033522979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = 44.595044 kcal Electronic energy + Delta-G solvation = -19742.447636 eV Core-core repulsion = 16675.519556 eV Total energy + Delta-G solvation = -3066.928079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56475 -40.25669 -38.93494 -36.32336 -34.11697 -31.82445 -30.93907 -29.15464 -28.14570 -27.23868 -26.13390 -23.26387 -22.14162 -21.47181 -20.36489 -19.13474 -18.94874 -18.03195 -17.37722 -16.84640 -16.67360 -16.06400 -15.87622 -15.35557 -14.99902 -14.65395 -14.47081 -14.23190 -13.98476 -13.78460 -13.37650 -13.18262 -12.97361 -12.66209 -12.46498 -12.38459 -12.22830 -12.05902 -11.82318 -11.54303 -11.41670 -10.74960 -10.71087 -10.59000 -10.02752 -9.66337 -8.92392 -7.77368 -5.23537 -0.80247 0.09443 0.74571 1.30380 1.48421 1.51916 1.58229 1.88245 2.07899 2.50850 2.96195 3.32772 3.65638 3.78426 3.85200 3.97638 4.19572 4.28742 4.32085 4.42269 4.59558 4.63119 4.72417 4.80641 4.94275 4.97250 5.06045 5.27562 5.44807 5.48968 5.56481 5.76165 6.19073 6.27683 6.45813 6.87638 7.08536 7.73985 8.38397 9.24293 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.042867 B = 0.003698 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.021031 B = 7569.411806 C = 7798.452235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.575 5.575 3 C 0.589 3.411 4 O -0.569 6.569 5 C -0.057 4.057 6 N -0.426 5.426 7 C 0.008 3.992 8 C -0.250 4.250 9 S 0.265 5.735 10 C 0.139 3.861 11 H 0.094 0.906 12 C -0.132 4.132 13 C 0.158 3.842 14 N -0.622 5.622 15 C -0.242 4.242 16 H 0.082 0.918 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.984 3.016 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.129 3.871 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.208 0.792 28 H 0.223 0.777 29 H 0.074 0.926 30 H 0.078 0.922 31 H -0.011 1.011 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.044 0.956 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 23.761 -0.348 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.305 5.305 3 C 0.375 3.625 4 O -0.449 6.449 5 C -0.329 4.329 6 N -0.146 5.146 7 C -0.148 4.148 8 C -0.391 4.391 9 S 0.519 5.481 10 C 0.035 3.965 11 H 0.112 0.888 12 C -0.171 4.171 13 C 0.032 3.968 14 N -0.348 5.348 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.200 1.200 23 C 0.003 3.997 24 H 0.082 0.918 25 H 0.132 0.868 26 H 0.084 0.916 27 H 0.225 0.775 28 H 0.240 0.760 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.007 0.993 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.573 23.409 -0.323 23.682 hybrid contribution -0.970 -0.996 -0.320 1.427 sum -4.543 22.413 -0.643 22.877 Atomic orbital electron populations 1.22359 0.76758 1.04258 1.03454 1.47640 1.08767 1.04215 1.69868 1.17170 0.85940 0.82649 0.76781 1.90806 1.13901 1.87200 1.53015 1.27202 0.93160 0.98708 1.13829 1.67047 1.10159 1.25192 1.12184 1.22347 1.03873 0.85214 1.03353 1.27419 0.96291 1.08106 1.07299 1.84060 1.07305 0.96507 1.60239 1.21960 0.96654 0.81820 0.96068 0.88797 1.23169 1.01856 0.95670 0.96451 1.21709 0.95943 0.93629 0.85503 1.44739 1.77801 1.02224 1.10085 1.19410 1.36855 0.85694 0.95145 0.90008 1.25651 1.02082 1.00322 0.97572 1.70018 1.54680 1.22720 1.12341 0.85079 0.78334 0.78212 0.77222 1.20615 1.21866 1.20000 1.21660 0.98560 0.84891 0.94564 0.91796 0.86818 0.91604 0.77541 0.75993 0.90714 0.90355 0.99258 0.90020 0.94158 0.93816 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 8.38 127.77 1.07 3.14 16 2 N -0.57 -19.13 2.89 -820.03 -2.37 -21.49 16 3 C 0.59 19.41 7.66 86.61 0.66 20.07 16 4 O -0.57 -21.86 16.33 -4.09 -0.07 -21.92 16 5 C -0.06 -1.46 7.20 87.26 0.63 -0.83 16 6 N -0.43 -9.31 7.00 -190.31 -1.33 -10.65 16 7 C 0.01 0.11 11.24 83.95 0.94 1.06 16 8 C -0.25 -2.69 11.09 66.90 0.74 -1.94 16 9 S 0.27 4.63 23.04 -56.49 -1.30 3.33 16 10 C 0.14 5.41 3.35 46.18 0.15 5.57 16 11 H 0.09 3.89 7.01 -2.39 -0.02 3.87 16 12 C -0.13 -5.27 6.66 31.99 0.21 -5.06 16 13 C 0.16 8.01 5.88 86.86 0.51 8.52 16 14 N -0.62 -32.88 3.40 -691.30 -2.35 -35.23 16 15 C -0.24 -13.75 10.28 84.03 0.86 -12.88 16 16 H 0.08 4.43 7.83 -2.92 -0.02 4.40 16 17 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 18 N -0.95 -56.66 10.09 21.65 0.22 -56.44 16 19 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 C 0.13 5.65 6.78 86.68 0.59 6.24 16 24 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.11 2.90 5.28 -2.39 -0.01 2.89 16 26 H 0.07 2.01 6.17 -2.39 -0.01 1.99 16 27 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 29 H 0.07 2.85 7.34 -2.39 -0.02 2.83 16 30 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.08 4.64 5.87 -2.39 -0.01 4.63 16 33 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.04 1.82 6.01 -2.39 -0.01 1.81 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.10 300.13 2.78 -67.32 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.11 Total: 6.65 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.85 Total: 20.73 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -5.83 Total: -123.81 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.07 Total: -21.92 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.30 Total: 3.33 kcal Total: -70.10 2.78 -67.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033522979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.914 kcal (2) G-P(sol) polarization free energy of solvation -70.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds