Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34778 * 125.64110 * 204.14502 * 5 4 2 7 7 O 1.21627 * 120.00464 * 0.02562 * 6 5 4 8 8 C 1.47266 * 119.99699 * 180.02562 * 6 5 4 9 9 C 1.35210 * 123.14557 * 180.02562 * 8 6 5 10 10 S 1.70936 * 108.83039 * 179.97438 * 9 8 6 11 11 C 1.70768 * 91.12852 * 359.97438 * 10 9 8 12 12 N 1.28637 * 110.56031 * 359.76540 * 11 10 9 13 13 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 14 14 C 1.54325 * 107.27065 * 358.94051 * 13 5 4 15 15 H 1.08996 * 110.72124 * 219.44887 * 14 13 5 16 16 N 1.46501 * 110.87274 * 96.24166 * 14 13 5 17 17 C 1.36936 * 119.99547 * 91.39334 * 16 14 13 18 18 H 1.07995 * 120.00374 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99522 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47313 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47177 * 120.00201 * 21 19 17 24 24 H 1.48502 * 109.47260 * 239.99726 * 21 19 17 25 25 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 26 26 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 27 27 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 28 28 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 29 29 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 30 30 H 1.08006 * 125.58207 * 359.97438 * 9 8 6 31 31 H 1.08006 * 124.71567 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.88350 * 239.52260 * 13 5 4 33 33 H 1.08997 * 110.01690 * 118.42776 * 13 5 4 34 34 H 0.97003 * 119.99871 * 271.38973 * 16 14 13 35 35 H 0.97008 * 119.99637 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4479 -1.5605 -1.5943 7 8 4.3010 -1.4975 -2.8000 8 6 5.7411 -1.9837 -1.0312 9 6 6.8066 -2.3158 -1.7945 10 16 8.1060 -2.7464 -0.7707 11 6 7.1528 -2.4578 0.6166 12 7 5.9732 -2.0692 0.2814 13 6 3.4675 -1.2742 0.6958 14 6 2.0862 -0.8080 1.2021 15 1 2.1923 -0.1700 2.0795 16 7 1.2246 -1.9551 1.4988 17 6 1.2044 -2.4881 2.7600 18 1 1.8238 -2.0631 3.5358 19 6 0.3876 -3.5747 3.0412 20 7 -0.3678 -4.0923 2.0957 21 14 0.3604 -4.3023 4.7614 22 1 1.2923 -3.5441 5.6343 23 1 -1.0153 -4.2159 5.3138 24 1 0.7822 -5.7250 4.7038 25 1 -0.3633 0.4521 0.9229 26 1 -0.3633 0.5732 -0.8529 27 1 -0.3633 -1.0253 -0.0699 28 1 1.4518 -1.6703 -1.4025 29 1 2.1559 -0.1719 -2.0837 30 1 6.8325 -2.3099 -2.8742 31 1 7.4944 -2.5801 1.6339 32 1 4.2427 -0.5998 1.0597 33 1 3.6662 -2.2884 1.0422 34 1 0.6684 -2.3370 0.8018 35 1 -0.9383 -4.8519 2.2922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054463616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 33.920338 kcal Electronic energy + Delta-G solvation = -19970.080360 eV Core-core repulsion = 16902.689391 eV Total energy + Delta-G solvation = -3067.390969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45988 -38.87066 -37.38205 -33.90013 -32.31711 -30.66965 -30.39858 -27.66303 -27.01426 -25.01815 -23.82758 -22.71422 -21.16979 -19.33103 -19.17576 -18.23100 -17.38877 -16.15823 -15.98109 -15.61906 -15.00433 -14.49826 -14.43603 -13.90811 -13.59081 -13.43930 -13.00331 -12.94944 -12.52350 -12.26569 -11.94392 -11.78623 -11.42697 -11.08722 -10.92094 -10.73635 -10.42463 -10.20896 -9.98479 -9.83337 -9.80607 -9.74772 -9.60307 -9.10514 -8.94934 -8.16618 -7.00736 -5.79866 -3.08927 0.47520 1.17696 1.51781 2.07501 3.35835 3.41428 3.47247 3.49491 3.54072 4.13161 4.56486 4.83131 5.05109 5.14616 5.26406 5.28930 5.40137 5.61220 5.68511 5.80997 5.89167 5.98256 6.08331 6.28573 6.35519 6.40862 6.49656 6.68993 6.70366 6.93185 6.99299 7.40664 7.68899 7.88580 8.37505 8.39837 9.50016 10.05547 10.40585 11.42604 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.005462 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.483141 B = 5124.849572 C = 6349.907773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.599 3.401 7 O -0.553 6.553 8 C 0.018 3.982 9 C -0.226 4.226 10 S 0.189 5.811 11 C 0.000 4.000 12 N -0.426 5.426 13 C 0.088 3.912 14 C 0.167 3.833 15 H 0.072 0.928 16 N -0.711 5.711 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.188 0.812 31 H 0.205 0.795 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.386 0.614 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.891 6.082 -4.915 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.318 5.318 6 C 0.385 3.615 7 O -0.433 6.433 8 C -0.117 4.117 9 C -0.368 4.368 10 S 0.443 5.557 11 C -0.300 4.300 12 N -0.140 5.140 13 C -0.038 4.038 14 C 0.055 3.945 15 H 0.090 0.910 16 N -0.352 5.352 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.205 0.795 31 H 0.221 0.779 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.221 0.779 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.455 5.847 -5.084 17.289 hybrid contribution -0.953 -0.501 0.472 1.175 sum 14.502 5.346 -4.612 16.130 Atomic orbital electron populations 1.21525 0.93306 1.02982 1.00858 1.22661 0.96981 0.98446 0.95525 0.90408 1.22333 0.82505 0.98490 0.97474 1.48244 1.11326 1.63549 1.08637 1.16692 0.81712 0.77937 0.85172 1.90773 1.82886 1.55835 1.13766 1.20517 0.96678 1.06591 0.87870 1.26565 0.96908 1.06438 1.06887 1.82804 1.15528 1.59605 0.97724 1.28593 0.92703 1.03928 1.04749 1.67217 1.18141 1.13511 1.15123 1.23294 1.00090 1.03087 0.77302 1.21313 0.88689 0.89842 0.94637 0.91017 1.42433 1.48638 1.33326 1.10811 1.19290 1.20124 1.09974 0.87742 0.90955 1.24735 0.99463 0.98885 0.97617 1.69673 1.30090 1.26390 1.31748 0.86136 0.77217 0.78848 0.84080 1.20512 1.21899 1.21967 0.92107 0.93804 0.91182 0.91006 0.91154 0.79522 0.77882 0.92099 0.89922 0.77874 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.84 37.16 0.33 -1.77 16 2 C -0.12 -1.90 3.51 -88.47 -0.31 -2.21 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.11 2.00 6.34 -2.52 -0.02 1.98 16 5 N -0.59 -10.92 3.33 -171.84 -0.57 -11.49 16 6 C 0.60 11.28 7.83 -12.59 -0.10 11.19 16 7 O -0.55 -11.38 16.97 5.25 0.09 -11.29 16 8 C 0.02 0.29 6.62 -84.52 -0.56 -0.26 16 9 C -0.23 -2.85 10.62 29.65 0.31 -2.53 16 10 S 0.19 1.68 22.96 -107.50 -2.47 -0.79 16 11 C 0.00 0.00 12.17 51.42 0.63 0.63 16 12 N -0.43 -6.42 7.66 -12.36 -0.09 -6.52 16 13 C 0.09 1.64 5.20 -3.07 -0.02 1.62 16 14 C 0.17 3.23 3.38 -66.09 -0.22 3.00 16 15 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 16 N -0.71 -17.00 4.51 -51.65 -0.23 -17.23 16 17 C -0.24 -6.40 9.96 -15.06 -0.15 -6.55 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 21 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.32 6.48 -51.93 -0.34 0.98 16 28 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 29 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 30 H 0.19 2.14 8.03 -52.48 -0.42 1.72 16 31 H 0.20 1.50 8.06 -52.48 -0.42 1.07 16 32 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 33 H 0.08 1.78 7.55 -51.93 -0.39 1.39 16 34 H 0.39 9.91 6.31 -40.82 -0.26 9.65 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -32.13 307.95 -7.42 -39.56 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.29 Total: 8.33 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.20 Total: 4.69 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.17 Total: -62.10 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.13 -7.42 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054463616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.477 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds