Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34778 * 125.64110 * 204.14502 * 5 4 2 7 7 O 1.21627 * 120.00464 * 0.02562 * 6 5 4 8 8 C 1.47266 * 119.99699 * 180.02562 * 6 5 4 9 9 C 1.35210 * 123.14557 * 180.02562 * 8 6 5 10 10 S 1.70936 * 108.83039 * 179.97438 * 9 8 6 11 11 C 1.70768 * 91.12852 * 359.97438 * 10 9 8 12 12 N 1.28637 * 110.56031 * 359.76540 * 11 10 9 13 13 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 14 14 C 1.54325 * 107.27065 * 358.94051 * 13 5 4 15 15 H 1.08996 * 110.72124 * 219.44887 * 14 13 5 16 16 N 1.46501 * 110.87274 * 96.24166 * 14 13 5 17 17 C 1.36936 * 119.99547 * 91.39334 * 16 14 13 18 18 H 1.07995 * 120.00374 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99522 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47313 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47177 * 120.00201 * 21 19 17 24 24 H 1.48502 * 109.47260 * 239.99726 * 21 19 17 25 25 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 26 26 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 27 27 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 28 28 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 29 29 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 30 30 H 1.08006 * 125.58207 * 359.97438 * 9 8 6 31 31 H 1.08006 * 124.71567 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.88350 * 239.52260 * 13 5 4 33 33 H 1.08997 * 110.01690 * 118.42776 * 13 5 4 34 34 H 0.97003 * 119.99871 * 271.38973 * 16 14 13 35 35 H 0.97008 * 119.99637 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4479 -1.5605 -1.5943 7 8 4.3010 -1.4975 -2.8000 8 6 5.7411 -1.9837 -1.0312 9 6 6.8066 -2.3158 -1.7945 10 16 8.1060 -2.7464 -0.7707 11 6 7.1528 -2.4578 0.6166 12 7 5.9732 -2.0692 0.2814 13 6 3.4675 -1.2742 0.6958 14 6 2.0862 -0.8080 1.2021 15 1 2.1923 -0.1700 2.0795 16 7 1.2246 -1.9551 1.4988 17 6 1.2044 -2.4881 2.7600 18 1 1.8238 -2.0631 3.5358 19 6 0.3876 -3.5747 3.0412 20 7 -0.3678 -4.0923 2.0957 21 14 0.3604 -4.3023 4.7614 22 1 1.2923 -3.5441 5.6343 23 1 -1.0153 -4.2159 5.3138 24 1 0.7822 -5.7250 4.7038 25 1 -0.3633 0.4521 0.9229 26 1 -0.3633 0.5732 -0.8529 27 1 -0.3633 -1.0253 -0.0699 28 1 1.4518 -1.6703 -1.4025 29 1 2.1559 -0.1719 -2.0837 30 1 6.8325 -2.3099 -2.8742 31 1 7.4944 -2.5801 1.6339 32 1 4.2427 -0.5998 1.0597 33 1 3.6662 -2.2884 1.0422 34 1 0.6684 -2.3370 0.8018 35 1 -0.9383 -4.8519 2.2922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054463616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 11.816006 kcal Electronic energy + Delta-G solvation = -19971.038876 eV Core-core repulsion = 16902.689391 eV Total energy + Delta-G solvation = -3068.349485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68017 -40.12598 -38.84286 -35.71996 -33.91211 -32.25446 -31.62478 -29.33449 -28.27466 -26.11118 -25.76247 -24.08874 -22.48026 -20.73338 -20.32648 -19.60185 -19.15829 -17.50708 -17.28563 -16.88748 -16.53277 -16.02824 -15.77970 -15.43544 -15.08548 -14.67337 -14.45468 -14.29325 -14.06291 -13.57951 -13.36882 -13.04162 -12.88916 -12.86211 -12.79301 -12.33925 -12.07815 -11.98026 -11.47379 -11.44596 -11.26741 -11.01455 -10.72888 -10.63545 -10.02924 -9.62214 -8.99171 -7.91192 -5.19196 -0.47266 0.34970 0.63523 0.96122 1.49455 1.49739 1.59652 2.02576 2.27058 2.58526 3.11103 3.40704 3.56280 3.89294 3.91852 3.97732 4.08685 4.15278 4.35281 4.42949 4.58832 4.68935 4.73606 4.82523 4.90348 5.02726 5.05562 5.25959 5.27637 5.37962 5.55127 5.60578 6.30165 6.40504 6.50453 7.00591 7.37357 8.11071 8.35033 9.32562 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.005462 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.483141 B = 5124.849572 C = 6349.907773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 H 0.109 0.891 4 C 0.113 3.887 5 N -0.594 5.594 6 C 0.591 3.409 7 O -0.582 6.582 8 C -0.021 4.021 9 C -0.237 4.237 10 S 0.304 5.696 11 C -0.011 4.011 12 N -0.468 5.468 13 C 0.109 3.891 14 C 0.158 3.842 15 H 0.082 0.918 16 N -0.721 5.721 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.075 4.075 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.300 1.300 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.192 0.808 31 H 0.236 0.764 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.374 0.626 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.445 7.034 -4.144 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.120 4.120 3 H 0.127 0.873 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.378 3.622 7 O -0.464 6.464 8 C -0.156 4.156 9 C -0.380 4.380 10 S 0.559 5.441 11 C -0.310 4.310 12 N -0.182 5.182 13 C -0.016 4.016 14 C 0.048 3.952 15 H 0.100 0.900 16 N -0.360 5.360 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.267 4.267 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.223 1.223 24 H -0.228 1.228 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.210 0.790 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.207 0.793 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.068 6.839 -4.292 19.790 hybrid contribution -1.539 -0.788 0.165 1.737 sum 16.529 6.051 -4.127 18.079 Atomic orbital electron populations 1.21446 0.93135 1.01381 1.02019 1.22616 0.96972 0.99199 0.93167 0.87313 1.22338 0.82085 0.97978 0.98527 1.48346 1.11683 1.63822 1.08560 1.17253 0.82798 0.77155 0.84963 1.90728 1.83730 1.57134 1.14824 1.20245 0.96278 1.09953 0.89081 1.26899 0.98015 1.05138 1.07977 1.82416 1.11438 1.56137 0.94083 1.29165 0.92169 1.02390 1.07281 1.67160 1.20541 1.15669 1.14864 1.22919 0.99721 1.01496 0.77479 1.21567 0.88478 0.88882 0.96310 0.89992 1.42570 1.49230 1.34511 1.09718 1.19687 1.18644 1.09174 0.88809 0.90098 1.25492 1.00126 1.00039 1.01038 1.69835 1.31591 1.27117 1.33692 0.85133 0.77058 0.77599 0.80352 1.18644 1.22347 1.22781 0.92319 0.90909 0.94396 0.93311 0.89948 0.79031 0.74801 0.90485 0.93043 0.79265 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.84 71.98 0.64 -3.26 16 2 C -0.10 -3.17 3.51 -9.40 -0.03 -3.20 16 3 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 4 C 0.11 3.98 6.34 86.86 0.55 4.53 16 5 N -0.59 -22.35 3.33 -815.84 -2.71 -25.07 16 6 C 0.59 22.62 7.83 86.62 0.68 23.30 16 7 O -0.58 -24.50 16.97 -4.12 -0.07 -24.57 16 8 C -0.02 -0.65 6.62 40.56 0.27 -0.38 16 9 C -0.24 -5.63 10.62 67.12 0.71 -4.92 16 10 S 0.30 4.32 22.96 -56.49 -1.30 3.02 16 11 C -0.01 -0.22 12.17 130.71 1.59 1.38 16 12 N -0.47 -13.64 7.66 -193.02 -1.48 -15.11 16 13 C 0.11 4.08 5.20 86.73 0.45 4.53 16 14 C 0.16 6.03 3.38 46.18 0.16 6.18 16 15 H 0.08 2.97 8.09 -2.39 -0.02 2.95 16 16 N -0.72 -35.02 4.51 -317.33 -1.43 -36.46 16 17 C -0.23 -12.38 9.96 84.03 0.84 -11.54 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.45 6.48 -2.39 -0.02 1.44 16 28 H 0.05 1.92 7.98 -2.39 -0.02 1.91 16 29 H 0.08 2.68 8.04 -2.39 -0.02 2.66 16 30 H 0.19 4.19 8.03 -2.91 -0.02 4.17 16 31 H 0.24 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.08 2.62 7.51 -2.39 -0.02 2.60 16 33 H 0.05 2.26 7.55 -2.39 -0.02 2.24 16 34 H 0.37 19.94 6.31 -92.71 -0.58 19.36 16 35 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -71.98 307.95 2.16 -69.81 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.53 Total: 26.87 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.32 Total: 12.85 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -5.34 Total: -135.66 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.57 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.30 Total: 3.02 kcal Total: -71.98 2.16 -69.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054463616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.627 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds