Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.77719 * 2 1 4 4 C 1.54326 * 110.71698 * 236.76075 * 2 1 3 5 5 N 1.47016 * 107.40147 * 219.51752 * 4 2 1 6 6 C 1.34777 * 125.65018 * 178.82897 * 5 4 2 7 7 O 1.21688 * 120.00048 * 175.19780 * 6 5 4 8 8 C 1.46680 * 120.00077 * 355.20406 * 6 5 4 9 9 C 1.35656 * 126.13315 * 185.42491 * 8 6 5 10 10 N 1.30943 * 114.19046 * 179.78202 * 9 8 6 11 11 C 1.29424 * 117.36870 * 0.51973 * 10 9 8 12 12 S 1.70957 * 110.38818 * 359.71125 * 11 10 9 13 13 C 1.47428 * 108.70485 * 358.86619 * 5 4 2 14 14 C 1.54907 * 104.83091 * 24.12394 * 13 5 4 15 15 H 1.08993 * 111.00856 * 204.87941 * 14 13 5 16 16 N 1.46503 * 111.00103 * 81.06593 * 14 13 5 17 17 C 1.36937 * 120.00092 * 86.45205 * 16 14 13 18 18 H 1.08003 * 119.99680 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00146 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00212 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00069 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47391 * 59.99779 * 21 19 17 23 23 H 1.48498 * 109.47313 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47240 * 299.99928 * 21 19 17 25 25 H 1.09003 * 109.47276 * 181.78912 * 1 2 3 26 26 H 1.09006 * 109.47131 * 301.78025 * 1 2 3 27 27 H 1.08996 * 109.47388 * 61.78520 * 1 2 3 28 28 H 1.09003 * 109.87891 * 100.02557 * 4 2 1 29 29 H 1.08998 * 109.88553 * 339.01457 * 4 2 1 30 30 H 1.07996 * 122.90718 * 359.95873 * 9 8 6 31 31 H 1.08004 * 124.81343 * 179.68217 * 11 10 9 32 32 H 1.08997 * 110.36748 * 142.96326 * 13 5 4 33 33 H 1.09000 * 110.36578 * 265.28729 * 13 5 4 34 34 H 0.96998 * 120.00264 * 266.45467 * 16 14 13 35 35 H 0.96994 * 119.99899 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2437 -1.5534 -0.7418 6 6 3.9877 -2.3883 -1.4941 7 8 4.9870 -2.9015 -1.0264 8 6 3.5929 -2.6781 -2.8767 9 6 4.1856 -3.5721 -3.7072 10 7 3.6382 -3.6465 -4.8943 11 6 2.6294 -2.8719 -5.1340 12 16 2.2680 -1.9221 -3.7592 13 6 3.4657 -1.2540 0.6846 14 6 2.0833 -0.7972 1.2137 15 1 2.1921 -0.1551 2.0876 16 7 1.2296 -1.9491 1.5150 17 6 1.3018 -2.5524 2.7422 18 1 1.9877 -2.1788 3.4881 19 6 0.4926 -3.6435 3.0279 20 7 -0.3437 -4.0986 2.1191 21 14 0.5905 -4.4660 4.7022 22 1 0.2494 -3.4799 5.7589 23 1 -0.3679 -5.5992 4.7539 24 1 1.9683 -4.9732 4.9247 25 1 -0.3634 -1.0272 0.0321 26 1 -0.3634 0.5413 0.8736 27 1 -0.3634 0.4858 -0.9055 28 1 2.3739 -0.1024 -1.9978 29 1 1.3119 -1.4739 -1.5793 30 1 5.0338 -4.1727 -3.4136 31 1 2.0922 -2.8309 -6.0700 32 1 3.7975 -2.1479 1.2127 33 1 4.1974 -0.4537 0.7948 34 1 0.6134 -2.2845 0.8453 35 1 -0.9094 -4.8607 2.3189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054464838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = 33.656252 kcal Electronic energy + Delta-G solvation = -20040.561467 eV Core-core repulsion = 16973.159046 eV Total energy + Delta-G solvation = -3067.402421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12413 -39.35310 -37.48129 -34.03271 -32.37909 -30.97270 -30.33737 -28.02622 -26.41502 -25.71101 -23.93161 -22.47715 -20.98610 -19.61336 -19.24425 -18.32646 -17.42839 -16.37774 -16.10182 -15.72215 -14.90431 -14.47803 -14.27106 -14.08317 -14.00097 -13.65031 -13.15742 -13.05983 -12.73417 -12.23285 -12.14824 -11.63637 -11.52677 -11.21577 -10.95773 -10.80311 -10.67112 -10.35852 -10.07471 -9.93704 -9.70641 -9.59004 -9.52046 -9.15455 -9.04153 -8.32097 -7.06149 -5.84875 -3.14499 0.25548 1.17632 1.56768 2.50505 3.15172 3.37476 3.41128 3.46471 3.46682 4.20276 4.52137 4.66458 4.74325 5.06640 5.08665 5.21869 5.32602 5.47860 5.57671 5.61481 5.66163 5.83997 6.02411 6.08836 6.13481 6.24208 6.27422 6.43421 6.58039 6.70631 6.84363 7.51594 7.63529 7.73234 8.30057 8.33059 9.45150 9.98410 10.32920 11.37297 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.005350 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.511665 B = 5232.576846 C = 5553.958184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.094 3.906 5 N -0.595 5.595 6 C 0.605 3.395 7 O -0.532 6.532 8 C -0.274 4.274 9 C 0.105 3.895 10 N -0.478 5.478 11 C 0.003 3.997 12 S 0.188 5.812 13 C 0.080 3.920 14 C 0.170 3.830 15 H 0.075 0.925 16 N -0.709 5.709 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.007 4.007 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.187 0.813 31 H 0.200 0.800 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.386 0.614 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 9.564 -12.611 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.102 0.898 4 C -0.030 4.030 5 N -0.327 5.327 6 C 0.392 3.608 7 O -0.411 6.411 8 C -0.398 4.398 9 C -0.052 4.052 10 N -0.191 5.191 11 C -0.291 4.291 12 S 0.443 5.557 13 C -0.045 4.045 14 C 0.058 3.942 15 H 0.093 0.907 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.203 0.797 31 H 0.217 0.783 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.450 9.570 -12.487 15.922 hybrid contribution 0.484 -1.287 0.712 1.548 sum 2.934 8.284 -11.776 14.693 Atomic orbital electron populations 1.21651 0.93190 1.03543 1.00937 1.22488 0.97194 0.98527 0.94438 0.89793 1.22251 0.88307 0.94884 0.97579 1.48149 1.29182 1.43057 1.12328 1.16273 0.82939 0.78858 0.82751 1.90824 1.25705 1.52114 1.72476 1.25882 1.04335 1.08359 1.01226 1.22192 0.99909 0.96443 0.86672 1.66291 1.09665 1.22913 1.20249 1.28949 0.98082 0.97486 1.04615 1.84276 1.28693 1.38230 1.04544 1.23395 1.00612 1.01280 0.79207 1.21456 0.88565 0.89973 0.94247 0.90740 1.42375 1.44753 1.32561 1.15292 1.19177 1.18253 1.09424 0.90890 0.91006 1.24735 0.98873 0.98733 0.98050 1.69637 1.26996 1.27524 1.33645 0.86262 0.77292 0.78922 0.83659 1.21154 1.21701 1.21177 0.90893 0.91946 0.93470 0.91678 0.90792 0.79651 0.78296 0.89642 0.92450 0.77816 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.81 37.16 0.33 -1.57 16 2 C -0.11 -1.49 3.43 -88.65 -0.30 -1.79 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.09 1.32 4.78 -3.07 -0.01 1.31 16 5 N -0.60 -10.32 3.33 -172.06 -0.57 -10.89 16 6 C 0.61 11.24 7.81 -12.85 -0.10 11.14 16 7 O -0.53 -11.54 17.17 5.20 0.09 -11.45 16 8 C -0.27 -4.23 6.40 -37.10 -0.24 -4.47 16 9 C 0.11 1.56 11.09 -18.85 -0.21 1.35 16 10 N -0.48 -6.54 10.51 -15.38 -0.16 -6.70 16 11 C 0.00 0.03 12.22 51.75 0.63 0.66 16 12 S 0.19 2.12 18.73 -107.50 -2.01 0.10 16 13 C 0.08 1.45 6.59 -2.53 -0.02 1.43 16 14 C 0.17 3.06 3.45 -65.65 -0.23 2.83 16 15 H 0.07 1.30 8.13 -51.93 -0.42 0.87 16 16 N -0.71 -16.41 4.72 -51.23 -0.24 -16.65 16 17 C -0.25 -6.51 9.98 -15.06 -0.15 -6.67 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H 0.07 1.25 6.21 -51.93 -0.32 0.93 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.75 7.19 -51.93 -0.37 0.38 16 29 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 30 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.09 1.84 8.08 -51.93 -0.42 1.42 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.39 9.52 6.01 -40.82 -0.25 9.28 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -32.24 305.29 -7.19 -39.44 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.20 Total: 7.10 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.40 Total: 3.93 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.25 Total: -60.75 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.01 Total: 0.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.24 -7.19 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054464838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.092 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds