Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.91424 * 2 1 4 4 C 1.54901 * 111.00507 * 123.90500 * 2 1 3 5 5 N 1.47426 * 104.83400 * 155.08004 * 4 2 1 6 6 C 1.34773 * 125.64953 * 155.90492 * 5 4 2 7 7 O 1.21688 * 120.00351 * 0.02562 * 6 5 4 8 8 C 1.46686 * 120.00017 * 180.02562 * 6 5 4 9 9 C 1.35664 * 126.12781 * 179.71293 * 8 6 5 10 10 N 1.30946 * 114.18728 * 179.78709 * 9 8 6 11 11 C 1.29431 * 117.36507 * 0.53080 * 10 9 8 12 12 S 1.70952 * 110.38855 * 359.70485 * 11 10 9 13 13 C 1.47019 * 108.70376 * 335.87327 * 5 4 2 14 14 C 1.54330 * 107.26866 * 1.05523 * 13 5 4 15 15 H 1.09002 * 110.71679 * 140.55640 * 14 13 5 16 16 N 1.46496 * 110.72205 * 263.82860 * 14 13 5 17 17 C 1.36939 * 120.00094 * 268.52747 * 16 14 13 18 18 H 1.07996 * 120.00215 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99836 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99881 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47188 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47123 * 119.99917 * 21 19 17 24 24 H 1.48498 * 109.47222 * 239.99969 * 21 19 17 25 25 H 1.08995 * 109.47378 * 183.90265 * 1 2 3 26 26 H 1.08999 * 109.46808 * 303.90329 * 1 2 3 27 27 H 1.09003 * 109.47287 * 63.89770 * 1 2 3 28 28 H 1.09004 * 110.36831 * 273.91814 * 4 2 1 29 29 H 1.08999 * 110.37045 * 36.24225 * 4 2 1 30 30 H 1.07996 * 122.90964 * 359.97088 * 9 8 6 31 31 H 1.07999 * 124.80250 * 179.68739 * 11 10 9 32 32 H 1.09000 * 109.88042 * 241.64152 * 13 5 4 33 33 H 1.08996 * 109.88551 * 120.47294 * 13 5 4 34 34 H 0.96999 * 119.99993 * 88.52149 * 16 14 13 35 35 H 0.97006 * 119.99674 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 1.2002 5 7 3.4271 -1.2431 0.7732 6 6 4.4476 -1.5617 1.5938 7 8 4.3002 -1.5006 2.8002 8 6 5.7362 -1.9820 1.0328 9 6 6.8428 -2.3238 1.7392 10 7 7.8669 -2.6673 0.9990 11 6 7.7114 -2.6312 -0.2854 12 16 6.1264 -2.1261 -0.6795 13 6 3.4674 -1.2742 -0.6961 14 6 2.0860 -0.8079 -1.2023 15 1 2.1921 -0.1699 -2.0797 16 7 1.2267 -1.9573 -1.4963 17 6 1.2057 -2.4918 -2.7569 18 1 1.8223 -2.0657 -3.5345 19 6 0.3910 -3.5807 -3.0356 20 7 -0.3609 -4.0995 -2.0881 21 14 0.3617 -4.3093 -4.7553 22 1 1.2897 -3.5492 -5.6308 23 1 0.7873 -5.7309 -4.6979 24 1 -1.0155 -4.2267 -5.3046 25 1 -0.3634 -1.0252 0.0699 26 1 -0.3633 0.5732 0.8530 27 1 -0.3634 0.4522 -0.9229 28 1 2.1561 -0.1720 2.0836 29 1 1.4519 -1.6704 1.4024 30 1 6.8754 -2.3162 2.8186 31 1 8.4749 -2.8842 -1.0061 32 1 3.6649 -2.2894 -1.0402 33 1 4.2425 -0.5998 -1.0601 34 1 0.6727 -2.3399 -0.7980 35 1 -0.9299 -4.8607 -2.2827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054464840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 31.403022 kcal Electronic energy + Delta-G solvation = -19922.645279 eV Core-core repulsion = 16855.145151 eV Total energy + Delta-G solvation = -3067.500128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15628 -39.35510 -37.53281 -34.06895 -32.59463 -30.79817 -30.36123 -27.93119 -26.82277 -25.43234 -23.94153 -22.45789 -21.12871 -19.60093 -19.30379 -18.22780 -17.50914 -16.30626 -16.14693 -15.69361 -14.92073 -14.54519 -14.31554 -14.05347 -14.00349 -13.72895 -13.27688 -13.03705 -12.72771 -12.25299 -12.05994 -11.73033 -11.47625 -11.20932 -11.02006 -10.89566 -10.59463 -10.31113 -10.12251 -10.01042 -9.75869 -9.59634 -9.50470 -9.13775 -9.09048 -8.37554 -7.16684 -5.91934 -3.22701 0.26007 1.22212 1.62692 2.48538 3.11495 3.29553 3.34162 3.39900 3.42665 4.21971 4.45462 4.60436 5.00808 5.04742 5.10944 5.25525 5.30094 5.39524 5.54369 5.65518 5.80373 5.87126 6.02199 6.06025 6.14709 6.24318 6.26988 6.41012 6.47662 6.62653 6.86446 7.52054 7.56770 7.67495 8.20451 8.25508 9.37716 9.90760 10.25623 11.29952 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.005925 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.286558 B = 4724.826307 C = 5895.751779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.604 3.396 7 O -0.541 6.541 8 C -0.282 4.282 9 C 0.105 3.895 10 N -0.481 5.481 11 C -0.003 4.003 12 S 0.211 5.789 13 C 0.056 3.944 14 C 0.178 3.822 15 H 0.077 0.923 16 N -0.709 5.709 17 C -0.250 4.250 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.927 5.927 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.185 0.815 31 H 0.200 0.800 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.388 0.612 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 7.378 2.151 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.098 0.902 4 C -0.005 4.005 5 N -0.332 5.332 6 C 0.392 3.608 7 O -0.421 6.421 8 C -0.407 4.407 9 C -0.053 4.053 10 N -0.195 5.195 11 C -0.297 4.297 12 S 0.467 5.533 13 C -0.072 4.072 14 C 0.065 3.935 15 H 0.095 0.905 16 N -0.349 5.349 17 C -0.381 4.381 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.737 3.263 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.202 0.798 31 H 0.216 0.784 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.223 0.777 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.305 7.292 1.828 12.756 hybrid contribution 0.039 -0.813 0.085 0.818 sum 10.345 6.479 1.913 12.355 Atomic orbital electron populations 1.21533 0.93064 1.03097 1.01051 1.22675 0.97212 0.98510 0.95157 0.90165 1.22328 0.82012 0.98618 0.97584 1.48279 1.12101 1.65083 1.07727 1.16339 0.81371 0.77648 0.85479 1.90808 1.82661 1.55102 1.13513 1.25828 1.01085 1.16923 0.96848 1.22170 0.85767 0.95541 1.01820 1.66318 1.31242 1.17572 1.04348 1.29031 1.02325 1.02322 0.96037 1.84690 1.06345 1.57654 1.04603 1.23574 1.02317 1.02582 0.78708 1.21155 0.87505 0.89964 0.94904 0.90500 1.42460 1.48607 1.32928 1.10947 1.19276 1.20988 1.10155 0.87669 0.90814 1.24763 0.99150 0.98702 0.97703 1.69665 1.29889 1.26080 1.31783 0.86139 0.77368 0.78901 0.83853 1.20415 1.21816 1.21764 0.91122 0.93621 0.91993 0.90847 0.90818 0.79792 0.78362 0.89705 0.92105 0.77685 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.85 37.16 0.33 -1.60 16 2 C -0.12 -1.70 3.51 -88.48 -0.31 -2.01 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.86 6.33 -2.53 -0.02 1.84 16 5 N -0.60 -10.03 3.33 -172.06 -0.57 -10.60 16 6 C 0.60 10.58 7.82 -12.85 -0.10 10.48 16 7 O -0.54 -10.74 17.12 5.20 0.09 -10.65 16 8 C -0.28 -4.27 6.40 -37.09 -0.24 -4.51 16 9 C 0.11 1.50 11.09 -18.85 -0.21 1.29 16 10 N -0.48 -6.54 10.51 -15.38 -0.16 -6.70 16 11 C 0.00 -0.04 12.22 51.75 0.63 0.59 16 12 S 0.21 2.59 18.69 -107.50 -2.01 0.58 16 13 C 0.06 0.89 4.93 -3.06 -0.02 0.88 16 14 C 0.18 3.06 3.39 -66.09 -0.22 2.84 16 15 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 16 N -0.71 -15.65 4.50 -51.65 -0.23 -15.89 16 17 C -0.25 -6.23 9.96 -15.06 -0.15 -6.38 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 21 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.07 1.23 6.48 -51.93 -0.34 0.90 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 30 H 0.19 2.43 8.06 -52.49 -0.42 2.00 16 31 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.08 1.53 6.93 -51.93 -0.36 1.17 16 33 H 0.06 0.84 6.86 -51.93 -0.36 0.48 16 34 H 0.39 9.30 6.31 -40.82 -0.26 9.04 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -30.18 305.47 -7.20 -37.39 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.22 Total: 7.73 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.40 Total: 3.16 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.24 Total: -58.76 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.01 Total: 0.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.18 -7.20 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054464840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.788 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds