Wall clock time and date at job start Tue Mar 31 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.78223 * 2 1 4 4 C 1.54376 * 110.75209 * 123.24271 * 2 1 3 5 5 N 1.47026 * 107.28420 * 140.50645 * 4 2 1 6 6 C 1.34779 * 125.64431 * 181.05133 * 5 4 2 7 7 O 1.21688 * 119.99732 * 174.88035 * 6 5 4 8 8 C 1.46681 * 120.00160 * 354.88934 * 6 5 4 9 9 C 1.35661 * 126.12854 * 185.35478 * 8 6 5 10 10 N 1.30952 * 114.18853 * 179.78238 * 9 8 6 11 11 C 1.29423 * 117.36462 * 0.52518 * 10 9 8 12 12 S 1.70960 * 110.38977 * 359.70707 * 11 10 9 13 13 C 1.47422 * 108.70568 * 1.08967 * 5 4 2 14 14 C 1.54906 * 104.83337 * 335.87118 * 13 5 4 15 15 H 1.08996 * 111.00767 * 278.90099 * 14 13 5 16 16 N 1.46504 * 111.00531 * 155.08206 * 14 13 5 17 17 C 1.36931 * 119.99733 * 89.58182 * 16 14 13 18 18 H 1.07996 * 120.00275 * 0.02562 * 17 16 14 19 19 C 1.38820 * 119.99643 * 179.97438 * 17 16 14 20 20 N 1.31609 * 120.00236 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99631 * 180.27582 * 19 17 16 22 22 H 1.48501 * 109.47120 * 179.72746 * 21 19 17 23 23 H 1.48500 * 109.47183 * 299.72353 * 21 19 17 24 24 H 1.48497 * 109.47417 * 59.72588 * 21 19 17 25 25 H 1.08998 * 109.46817 * 183.23738 * 1 2 3 26 26 H 1.08995 * 109.46808 * 303.24325 * 1 2 3 27 27 H 1.08998 * 109.46725 * 63.24458 * 1 2 3 28 28 H 1.08989 * 109.84701 * 21.10117 * 4 2 1 29 29 H 1.09000 * 110.03127 * 260.01294 * 4 2 1 30 30 H 1.07999 * 122.90863 * 359.95953 * 9 8 6 31 31 H 1.08001 * 124.80874 * 179.68956 * 11 10 9 32 32 H 1.08997 * 110.36748 * 217.02879 * 13 5 4 33 33 H 1.09004 * 110.36667 * 94.71219 * 13 5 4 34 34 H 0.97004 * 119.99799 * 269.58034 * 16 14 13 35 35 H 0.97001 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0770 -0.7914 1.2074 5 7 3.2449 -1.5516 0.7385 6 6 3.9925 -2.3849 1.4890 7 8 4.8823 -3.0352 0.9731 8 6 3.7335 -2.5081 2.9275 9 6 4.4684 -3.2254 3.8140 10 7 4.0281 -3.1686 5.0460 11 6 2.9660 -2.4626 5.2662 12 16 2.4078 -1.7569 3.8125 13 6 3.4632 -1.2508 -0.6881 14 6 2.0790 -0.7956 -1.2137 15 1 1.4448 -1.6533 -1.4378 16 7 2.2215 0.0694 -2.3875 17 6 2.2522 -0.4785 -3.6421 18 1 2.1710 -1.5482 -3.7663 19 6 2.3867 0.3413 -4.7543 20 7 2.4853 1.6449 -4.6029 21 14 2.4209 -0.4055 -6.4662 22 1 2.5651 0.6749 -7.4747 23 1 3.5690 -1.3410 -6.5753 24 1 1.1557 -1.1440 -6.7094 25 1 -0.3633 -1.0260 0.0580 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4626 -0.9176 28 1 1.3138 -1.4755 1.5779 29 1 2.3754 -0.1048 1.9996 30 1 5.3426 -3.7918 3.5289 31 1 2.4983 -2.3372 6.2316 32 1 3.7953 -2.1437 -1.2176 33 1 4.1936 -0.4493 -0.7993 34 1 2.2941 1.0303 -2.2759 35 1 2.5796 2.2177 -5.3801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054464841.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:26 Heat of formation + Delta-G solvation = 29.321370 kcal Electronic energy + Delta-G solvation = -19561.901608 eV Core-core repulsion = 16494.311212 eV Total energy + Delta-G solvation = -3067.590396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27345 -39.46264 -37.54030 -34.26429 -32.51617 -31.12420 -30.56913 -27.90449 -26.56657 -25.82823 -24.04940 -22.09674 -21.08669 -20.05561 -19.64263 -18.40538 -17.27082 -16.48082 -16.39145 -15.81699 -15.01926 -14.52126 -14.30424 -14.18667 -14.03829 -13.71768 -13.24878 -13.08460 -12.84050 -12.79750 -12.02523 -11.81919 -11.71702 -11.19308 -11.11656 -10.85874 -10.73485 -10.34161 -10.09393 -10.08311 -9.88361 -9.72752 -9.66956 -9.31445 -9.05247 -8.47374 -7.13289 -5.88038 -3.19060 0.07588 0.99909 1.39489 2.32929 2.99227 3.16138 3.39936 3.44863 3.45587 4.03898 4.48558 4.51296 4.69205 4.91516 4.97628 5.08565 5.19476 5.38837 5.45131 5.58564 5.72676 5.77378 5.86153 5.91541 6.09230 6.16987 6.29535 6.36739 6.49955 6.50798 6.80601 7.34848 7.56807 7.61769 8.11922 8.29209 9.41555 9.93230 10.28410 11.33708 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033399 B = 0.004047 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.155851 B = 6917.519502 C = 7530.046250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 H 0.088 0.912 4 C 0.095 3.905 5 N -0.606 5.606 6 C 0.602 3.398 7 O -0.530 6.530 8 C -0.278 4.278 9 C 0.107 3.893 10 N -0.478 5.478 11 C 0.006 3.994 12 S 0.186 5.814 13 C 0.082 3.918 14 C 0.177 3.823 15 H 0.068 0.932 16 N -0.708 5.708 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.187 0.813 31 H 0.201 0.799 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.387 0.613 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -3.973 18.903 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 H 0.107 0.893 4 C -0.030 4.030 5 N -0.339 5.339 6 C 0.388 3.612 7 O -0.408 6.408 8 C -0.402 4.402 9 C -0.050 4.050 10 N -0.191 5.191 11 C -0.289 4.289 12 S 0.441 5.559 13 C -0.043 4.043 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.348 5.348 17 C -0.381 4.381 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.204 0.796 31 H 0.218 0.782 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.047 -4.038 18.724 19.577 hybrid contribution 0.883 -0.480 -0.928 1.368 sum -3.164 -4.518 17.796 18.631 Atomic orbital electron populations 1.21689 0.93597 1.01674 1.02366 1.22474 0.96623 0.99835 0.93859 0.89350 1.22294 0.87786 0.95012 0.97899 1.48374 1.29386 1.43270 1.12890 1.16364 0.81848 0.79650 0.83307 1.90847 1.32440 1.45157 1.72383 1.25908 1.03771 1.10653 0.99876 1.22231 1.00199 0.97004 0.85592 1.66312 1.12276 1.19147 1.21385 1.28988 0.96573 0.98482 1.04820 1.84330 1.26220 1.45369 0.99977 1.23551 1.02154 1.01297 0.77324 1.21391 0.91833 0.93686 0.86632 0.91363 1.42266 1.86707 1.05486 1.00296 1.19205 1.43454 0.92244 0.83238 0.90961 1.24755 1.02107 0.95364 0.98039 1.69640 1.56146 1.02319 1.29563 0.86253 0.77994 0.77847 0.84001 1.21623 1.21066 1.21108 0.92791 0.93030 0.91013 0.91033 0.91302 0.79569 0.78221 0.90561 0.91026 0.77804 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.16 37.16 0.34 -1.34 16 2 C -0.11 -1.53 3.19 -88.75 -0.28 -1.81 16 3 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 4 C 0.09 1.18 4.80 -3.03 -0.01 1.17 16 5 N -0.61 -9.54 3.33 -172.03 -0.57 -10.11 16 6 C 0.60 9.88 7.81 -12.85 -0.10 9.78 16 7 O -0.53 -10.48 17.10 5.20 0.09 -10.39 16 8 C -0.28 -3.63 6.40 -37.10 -0.24 -3.87 16 9 C 0.11 1.34 11.10 -18.85 -0.21 1.14 16 10 N -0.48 -5.54 10.51 -15.38 -0.16 -5.71 16 11 C 0.01 0.05 12.22 51.75 0.63 0.68 16 12 S 0.19 1.68 18.73 -107.50 -2.01 -0.33 16 13 C 0.08 1.50 6.63 -2.53 -0.02 1.48 16 14 C 0.18 3.25 3.14 -65.78 -0.21 3.04 16 15 H 0.07 1.29 8.02 -51.93 -0.42 0.87 16 16 N -0.71 -16.40 5.26 -51.35 -0.27 -16.67 16 17 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -26.83 13.06 55.49 0.72 -26.11 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.78 6.69 -51.94 -0.35 0.43 16 29 H 0.07 0.75 6.85 -51.93 -0.36 0.39 16 30 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.08 1.52 7.99 -51.93 -0.41 1.11 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.39 9.48 7.73 -40.82 -0.32 9.17 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -31.29 308.79 -7.26 -38.55 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.34 Total: 6.14 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.34 Total: 3.25 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.28 Total: -58.59 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.01 Total: -0.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.29 -7.26 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054464841.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.872 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds