Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.88378 * 2 1 4 4 C 1.54907 * 111.00021 * 236.12489 * 2 1 3 5 5 N 1.47424 * 104.82801 * 204.87653 * 4 2 1 6 6 C 1.34787 * 125.64556 * 204.08929 * 5 4 2 7 7 O 1.21686 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.46687 * 119.99572 * 179.97438 * 6 5 4 9 9 C 1.35657 * 126.12511 * 180.02562 * 8 6 5 10 10 N 1.30950 * 114.19004 * 179.97438 * 9 8 6 11 11 C 1.29426 * 117.36226 * 359.97438 * 10 9 8 12 12 S 1.70958 * 110.39207 * 0.02562 * 11 10 9 13 13 C 1.47022 * 108.70454 * 24.35794 * 5 4 2 14 14 C 1.54334 * 107.26215 * 358.58515 * 13 5 4 15 15 H 1.08998 * 110.66801 * 96.52703 * 14 13 5 16 16 N 1.46498 * 110.84674 * 219.67151 * 14 13 5 17 17 C 1.36937 * 120.00451 * 268.69570 * 16 14 13 18 18 H 1.07998 * 119.99678 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00448 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99912 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00179 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46993 * 89.99582 * 21 19 17 23 23 H 1.48494 * 109.47204 * 209.99807 * 21 19 17 24 24 H 1.48501 * 109.46879 * 330.00121 * 21 19 17 25 25 H 1.09000 * 109.46957 * 182.42346 * 1 2 3 26 26 H 1.08997 * 109.47274 * 302.42232 * 1 2 3 27 27 H 1.09003 * 109.47629 * 62.42516 * 1 2 3 28 28 H 1.08997 * 110.36950 * 86.04168 * 4 2 1 29 29 H 1.09000 * 110.46641 * 323.76152 * 4 2 1 30 30 H 1.07998 * 122.90917 * 359.96425 * 9 8 6 31 31 H 1.07996 * 124.80534 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.88248 * 118.12850 * 13 5 4 33 33 H 1.09003 * 109.87914 * 239.29373 * 13 5 4 34 34 H 0.97007 * 120.00306 * 88.69494 * 16 14 13 35 35 H 0.96994 * 120.00449 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4274 -1.2419 -0.7743 6 6 4.4478 -1.5598 -1.5955 7 8 4.3001 -1.4977 -2.8018 8 6 5.7368 -1.9795 -1.0351 9 6 6.8418 -2.3253 -1.7420 10 7 7.8684 -2.6624 -1.0023 11 6 7.7133 -2.6268 0.2822 12 16 6.1278 -2.1238 0.6770 13 6 3.4666 -1.2785 0.6950 14 6 2.0869 -0.8079 1.2018 15 1 1.4464 -1.6617 1.4226 16 7 2.2294 0.0494 2.3812 17 6 2.2015 -0.5007 3.6349 18 1 2.0749 -1.5665 3.7542 19 6 2.3360 0.3117 4.7525 20 7 2.4909 1.6106 4.6070 21 14 2.2973 -0.4386 6.4627 22 1 3.6760 -0.8079 6.8726 23 1 1.7428 0.5483 7.4238 24 1 1.4423 -1.6528 6.4513 25 1 -0.3633 -1.0268 0.0435 26 1 -0.3634 0.5510 0.8674 27 1 -0.3634 0.4757 -0.9109 28 1 2.1553 -0.1713 -2.0839 29 1 1.4528 -1.6701 -1.4047 30 1 6.8722 -2.3229 -2.8216 31 1 8.4770 -2.8799 1.0025 32 1 3.6616 -2.2955 1.0353 33 1 4.2431 -0.6073 1.0619 34 1 2.3436 1.0067 2.2741 35 1 2.5845 2.1784 5.3879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054464843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = 27.946914 kcal Electronic energy + Delta-G solvation = -19745.600534 eV Core-core repulsion = 16677.950537 eV Total energy + Delta-G solvation = -3067.649996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17933 -39.34419 -37.50785 -34.19864 -32.72588 -30.94484 -30.46048 -27.74433 -26.88991 -25.47335 -24.06585 -22.04702 -21.05771 -20.09249 -19.48462 -18.20751 -17.26516 -16.48007 -16.19944 -15.79781 -14.98478 -14.58181 -14.24650 -13.99556 -13.92857 -13.66514 -13.29465 -13.21197 -12.72320 -12.48693 -12.25614 -11.71437 -11.45736 -11.22371 -11.11951 -10.88339 -10.69845 -10.35841 -10.18405 -10.09358 -9.82208 -9.59733 -9.50936 -9.13813 -9.08441 -8.45184 -7.20283 -5.93844 -3.25485 0.25655 1.24311 1.64893 2.46744 3.03370 3.24227 3.33008 3.39319 3.40805 4.22215 4.43089 4.58141 4.95447 5.01796 5.11730 5.12914 5.28898 5.46190 5.51834 5.61025 5.74058 5.78263 5.90011 6.01642 6.07663 6.11648 6.23071 6.35660 6.39700 6.52939 6.73520 7.49521 7.54929 7.61341 8.13316 8.23012 9.35339 9.87362 10.22493 11.27734 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.005940 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.715221 B = 4712.305532 C = 6215.830354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.606 3.394 7 O -0.541 6.541 8 C -0.291 4.291 9 C 0.107 3.893 10 N -0.483 5.483 11 C -0.004 4.004 12 S 0.224 5.776 13 C 0.057 3.943 14 C 0.183 3.817 15 H 0.073 0.927 16 N -0.708 5.708 17 C -0.252 4.252 18 H 0.073 0.927 19 C -0.005 4.005 20 N -0.927 5.927 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.185 0.815 31 H 0.200 0.800 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.388 0.612 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -6.498 -8.228 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.339 5.339 6 C 0.393 3.607 7 O -0.421 6.421 8 C -0.415 4.415 9 C -0.052 4.052 10 N -0.196 5.196 11 C -0.297 4.297 12 S 0.480 5.520 13 C -0.071 4.071 14 C 0.070 3.930 15 H 0.090 0.910 16 N -0.348 5.348 17 C -0.383 4.383 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.201 0.799 31 H 0.217 0.783 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.222 0.778 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.383 -6.580 -7.891 10.817 hybrid contribution 0.395 -0.089 0.213 0.457 sum 3.778 -6.669 -7.678 10.849 Atomic orbital electron populations 1.21594 0.93575 1.01927 1.01903 1.22678 0.96567 0.99858 0.94372 0.89675 1.22314 0.81895 0.98387 0.98058 1.48365 1.12189 1.65378 1.07978 1.16375 0.81374 0.77480 0.85426 1.90804 1.82629 1.55120 1.13541 1.25835 1.01153 1.17336 0.97201 1.22165 0.85718 0.95529 1.01781 1.66334 1.31096 1.17846 1.04367 1.29071 1.02693 1.01949 0.96017 1.84999 1.06264 1.56924 1.03840 1.23627 1.04197 1.01596 0.77634 1.21206 0.90795 0.94013 0.87026 0.90954 1.42376 1.86063 1.06232 1.00084 1.19239 1.43338 0.92630 0.83089 0.90876 1.24765 1.02025 0.95399 0.97997 1.69653 1.55590 1.02864 1.29301 0.86211 0.77712 0.78037 0.84324 1.21542 1.21677 1.20587 0.92722 0.91289 0.93077 0.90559 0.91222 0.79851 0.78326 0.91599 0.90110 0.77772 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.30 37.16 0.35 -1.39 16 2 C -0.11 -1.70 3.27 -88.47 -0.29 -1.99 16 3 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16 4 C 0.12 1.65 6.37 -2.53 -0.02 1.63 16 5 N -0.61 -9.59 3.33 -172.05 -0.57 -10.16 16 6 C 0.61 10.12 7.82 -12.84 -0.10 10.02 16 7 O -0.54 -10.20 17.12 5.20 0.09 -10.11 16 8 C -0.29 -4.32 6.40 -37.10 -0.24 -4.56 16 9 C 0.11 1.50 11.09 -18.85 -0.21 1.29 16 10 N -0.48 -6.58 10.51 -15.38 -0.16 -6.74 16 11 C 0.00 -0.04 12.22 51.75 0.63 0.59 16 12 S 0.22 2.88 18.70 -107.50 -2.01 0.87 16 13 C 0.06 0.92 4.95 -3.06 -0.02 0.91 16 14 C 0.18 3.18 3.08 -66.10 -0.20 2.97 16 15 H 0.07 1.26 7.96 -51.93 -0.41 0.84 16 16 N -0.71 -15.64 5.15 -51.65 -0.27 -15.90 16 17 C -0.25 -6.26 9.96 -15.06 -0.15 -6.41 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 21 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 30 H 0.18 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.07 1.02 7.05 -51.93 -0.37 0.65 16 33 H 0.08 1.42 6.73 -51.93 -0.35 1.07 16 34 H 0.39 9.27 7.76 -40.82 -0.32 8.95 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -29.50 308.93 -7.26 -36.76 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.35 Total: 7.29 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.34 Total: 2.85 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.28 Total: -58.04 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.01 Total: 0.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.50 -7.26 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054464843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.705 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds