Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34778 * 125.64110 * 204.14502 * 5 4 2 7 7 O 1.21569 * 120.00387 * 0.02562 * 6 5 4 8 8 C 1.47701 * 119.99722 * 180.02562 * 6 5 4 9 9 C 1.39482 * 122.10214 * 179.74441 * 8 6 5 10 10 C 1.34996 * 111.68023 * 179.78267 * 9 8 6 11 11 S 1.71755 * 105.45417 * 0.42674 * 10 9 8 12 12 N 1.30600 * 122.09929 * 0.02562 * 8 6 5 13 13 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 14 14 C 1.54325 * 107.27065 * 358.94051 * 13 5 4 15 15 H 1.08996 * 110.72124 * 219.44887 * 14 13 5 16 16 N 1.46501 * 110.87274 * 96.24166 * 14 13 5 17 17 C 1.36936 * 119.99547 * 91.39334 * 16 14 13 18 18 H 1.07995 * 120.00374 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99522 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47168 * 89.99932 * 21 19 17 23 23 H 1.48506 * 109.47237 * 210.00135 * 21 19 17 24 24 H 1.48494 * 109.47198 * 330.00014 * 21 19 17 25 25 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 26 26 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 27 27 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 28 28 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 29 29 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 30 30 H 1.07998 * 124.15608 * 359.97016 * 9 8 6 31 31 H 1.08011 * 127.27263 * 180.16466 * 10 9 8 32 32 H 1.09000 * 109.88350 * 239.52260 * 13 5 4 33 33 H 1.08997 * 110.01690 * 118.42776 * 13 5 4 34 34 H 0.97003 * 119.99871 * 271.38973 * 16 14 13 35 35 H 0.97008 * 119.99637 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4479 -1.5605 -1.5943 7 8 4.3010 -1.4975 -2.7994 8 6 5.7450 -1.9849 -1.0295 9 6 6.8286 -2.3283 -1.8378 10 6 7.9066 -2.6784 -1.1045 11 16 7.4098 -2.5409 0.5339 12 7 5.9476 -2.0675 0.2580 13 6 3.4675 -1.2742 0.6958 14 6 2.0862 -0.8080 1.2021 15 1 2.1923 -0.1700 2.0795 16 7 1.2246 -1.9551 1.4988 17 6 1.2044 -2.4881 2.7600 18 1 1.8238 -2.0631 3.5358 19 6 0.3876 -3.5747 3.0412 20 7 -0.3678 -4.0923 2.0957 21 14 0.3604 -4.3023 4.7614 22 1 -0.6846 -3.6238 5.5694 23 1 0.0585 -5.7541 4.6801 24 1 1.6858 -4.1075 5.4022 25 1 -0.3633 0.4521 0.9229 26 1 -0.3633 0.5732 -0.8529 27 1 -0.3633 -1.0253 -0.0699 28 1 1.4518 -1.6703 -1.4025 29 1 2.1559 -0.1719 -2.0837 30 1 6.8086 -2.3129 -2.9175 31 1 8.8754 -2.9847 -1.4708 32 1 4.2427 -0.5998 1.0597 33 1 3.6662 -2.2884 1.0422 34 1 0.6684 -2.3370 0.8018 35 1 -0.9383 -4.8519 2.2922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054786743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = 32.388944 kcal Electronic energy + Delta-G solvation = -19973.816428 eV Core-core repulsion = 16906.359052 eV Total energy + Delta-G solvation = -3067.457376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40560 -38.69895 -37.27224 -33.96056 -32.49902 -31.40188 -30.44037 -27.75594 -27.21029 -25.28024 -23.78290 -22.27218 -21.03558 -19.31228 -19.07988 -18.38900 -17.54978 -16.77671 -15.84164 -15.49828 -14.91390 -14.50038 -14.09121 -13.86360 -13.61088 -13.34358 -13.02839 -12.95393 -12.53536 -12.17445 -11.92242 -11.48167 -11.25144 -11.17358 -11.07802 -10.89929 -10.66021 -10.36800 -10.23799 -9.91892 -9.91442 -9.78459 -9.61420 -8.97193 -8.87373 -8.20306 -7.03200 -5.81514 -3.10860 0.59901 1.42101 1.80477 1.81727 3.28096 3.40735 3.42975 3.46367 3.47861 4.55006 4.60203 4.81984 5.08926 5.23366 5.26494 5.37543 5.50090 5.58825 5.70168 5.72674 5.85429 5.93972 6.04969 6.24134 6.28627 6.33444 6.38720 6.46283 6.65299 6.70437 6.88061 6.97000 7.66612 7.83283 8.33465 8.36845 9.48267 10.03281 10.38413 11.40766 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.005732 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.021525 B = 4883.752538 C = 6120.387950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.586 5.586 6 C 0.598 3.402 7 O -0.548 6.548 8 C 0.055 3.945 9 C -0.134 4.134 10 C -0.289 4.289 11 S 0.450 5.550 12 N -0.497 5.497 13 C 0.086 3.914 14 C 0.169 3.831 15 H 0.072 0.928 16 N -0.711 5.711 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.170 0.830 31 H 0.184 0.816 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.386 0.614 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 6.182 -4.978 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.317 5.317 6 C 0.381 3.619 7 O -0.426 6.426 8 C -0.120 4.120 9 C -0.167 4.167 10 C -0.437 4.437 11 S 0.605 5.395 12 N -0.331 5.331 13 C -0.040 4.040 14 C 0.056 3.944 15 H 0.090 0.910 16 N -0.351 5.351 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.187 0.813 31 H 0.201 0.799 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.222 0.778 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.267 6.101 -3.318 15.868 hybrid contribution -0.285 -0.673 -1.216 1.419 sum 13.982 5.428 -4.535 15.669 Atomic orbital electron populations 1.21525 0.93248 1.03005 1.00896 1.22665 0.97033 0.98455 0.95446 0.90362 1.22347 0.82352 0.98550 0.97520 1.48270 1.11416 1.63439 1.08593 1.16864 0.81657 0.78123 0.85244 1.90762 1.82613 1.55507 1.13711 1.21171 0.97744 1.05681 0.87367 1.21374 0.90664 1.01571 1.03111 1.27158 1.04713 1.09343 1.02532 1.80622 1.00526 1.51616 1.06718 1.72722 1.18029 1.21455 1.20908 1.23323 1.00284 1.02994 0.77421 1.21297 0.88532 0.89875 0.94683 0.90970 1.42426 1.48590 1.33315 1.10814 1.19240 1.20319 1.10091 0.87728 0.91024 1.24738 0.99403 0.98825 0.97638 1.69662 1.29979 1.26394 1.31798 0.86204 0.77608 0.78330 0.84107 1.21673 1.21833 1.20740 0.92092 0.93756 0.91169 0.90911 0.91023 0.81299 0.79881 0.92171 0.89940 0.77836 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.84 37.16 0.33 -1.74 16 2 C -0.12 -1.88 3.51 -88.47 -0.31 -2.19 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.11 1.97 6.34 -2.52 -0.02 1.95 16 5 N -0.59 -10.77 3.33 -171.69 -0.57 -11.34 16 6 C 0.60 11.09 7.84 -12.39 -0.10 10.99 16 7 O -0.55 -11.07 16.91 5.31 0.09 -10.98 16 8 C 0.06 0.88 6.61 -84.06 -0.56 0.32 16 9 C -0.13 -1.72 9.98 -40.27 -0.40 -2.12 16 10 C -0.29 -2.81 11.40 29.58 0.34 -2.47 16 11 S 0.45 4.86 23.20 -107.50 -2.49 2.36 16 12 N -0.50 -7.62 8.21 24.84 0.20 -7.42 16 13 C 0.09 1.60 5.19 -3.07 -0.02 1.58 16 14 C 0.17 3.24 3.38 -66.09 -0.22 3.01 16 15 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 16 N -0.71 -16.92 4.51 -51.65 -0.23 -17.15 16 17 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.31 6.48 -51.93 -0.34 0.97 16 28 H 0.07 1.35 7.98 -51.93 -0.41 0.94 16 29 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 30 H 0.17 2.00 7.99 -52.49 -0.42 1.58 16 31 H 0.18 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 33 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 34 H 0.39 9.86 6.31 -40.82 -0.26 9.60 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -31.41 307.19 -8.16 -39.57 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.28 Total: 7.79 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.20 Total: 2.37 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.12 Total: -62.67 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -2.49 Total: 2.36 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.41 -8.16 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054786743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.961 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds