Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21572 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47685 * 120.00180 * 180.02562 * 6 5 4 9 9 C 1.39484 * 122.10634 * 180.02562 * 8 6 5 10 10 C 1.34999 * 111.68893 * 180.02562 * 9 8 6 11 11 S 1.71766 * 105.44754 * 0.02562 * 10 9 8 12 12 N 1.30614 * 122.10295 * 359.71401 * 8 6 5 13 13 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 14 14 C 1.54320 * 107.27576 * 1.05739 * 13 5 4 15 15 H 1.08990 * 110.72081 * 263.83328 * 14 13 5 16 16 N 1.46496 * 110.72131 * 140.55218 * 14 13 5 17 17 C 1.36937 * 120.00105 * 91.48188 * 16 14 13 18 18 H 1.08011 * 119.99816 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00719 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99432 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00509 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46634 * 60.00336 * 21 19 17 23 23 H 1.48505 * 109.47496 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47334 * 300.00675 * 21 19 17 25 25 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 26 26 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 27 27 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 28 28 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 29 29 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 30 30 H 1.08003 * 124.15674 * 359.95868 * 9 8 6 31 31 H 1.08001 * 127.27658 * 180.02562 * 10 9 8 32 32 H 1.09006 * 109.88301 * 120.47721 * 13 5 4 33 33 H 1.09003 * 109.88253 * 241.48112 * 13 5 4 34 34 H 0.97005 * 120.00849 * 271.48063 * 16 14 13 35 35 H 0.97002 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3004 -1.4996 2.7996 8 6 5.7451 -1.9843 1.0298 9 6 6.8300 -2.3239 1.8380 10 6 7.9069 -2.6777 1.1048 11 16 7.4115 -2.5357 -0.5337 12 7 5.9469 -2.0700 -0.2578 13 6 3.4674 -1.2743 -0.6957 14 6 2.0861 -0.8083 -1.2020 15 1 1.4468 -1.6636 -1.4204 16 7 2.2286 0.0488 -2.3815 17 6 2.1999 -0.5013 -3.6352 18 1 2.0726 -1.5672 -3.7544 19 6 2.3344 0.3108 -4.7529 20 7 2.4900 1.6097 -4.6076 21 14 2.2959 -0.4398 -6.4630 22 1 0.9961 -1.1266 -6.6729 23 1 2.4584 0.6321 -7.4779 24 1 3.4019 -1.4215 -6.5977 25 1 -0.3633 0.4756 0.9110 26 1 -0.3633 -1.0268 -0.0436 27 1 -0.3634 0.5511 -0.8674 28 1 2.1560 -0.1713 2.0837 29 1 1.4509 -1.6689 1.4042 30 1 6.8112 -2.3050 2.9177 31 1 8.8753 -2.9851 1.4711 32 1 4.2426 -0.6000 -1.0599 33 1 3.6678 -2.2892 -1.0393 34 1 2.3433 1.0061 -2.2746 35 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054786745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = 29.272701 kcal Electronic energy + Delta-G solvation = -19792.942249 eV Core-core repulsion = 16725.349743 eV Total energy + Delta-G solvation = -3067.592506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43477 -38.67364 -37.27351 -34.08101 -32.61853 -31.41462 -30.67072 -27.61504 -27.22382 -25.35528 -23.88968 -21.90635 -20.90818 -19.93032 -19.18472 -18.37658 -17.13643 -17.01764 -15.96049 -15.57345 -15.10287 -14.38547 -14.10911 -13.74059 -13.53480 -13.33823 -13.10753 -13.02725 -12.59818 -12.34873 -12.13862 -11.50333 -11.24711 -11.23104 -11.09784 -10.90101 -10.60481 -10.54086 -10.25884 -9.98863 -9.91826 -9.84621 -9.68737 -8.95465 -8.88417 -8.27984 -7.05947 -5.82622 -3.12775 0.60252 1.43050 1.77917 1.82520 3.20390 3.36640 3.40924 3.45801 3.46403 4.51225 4.60193 4.80249 5.04356 5.20417 5.24316 5.25631 5.49154 5.59601 5.66460 5.71355 5.80809 5.90104 5.95654 6.02348 6.24589 6.27682 6.30440 6.49372 6.61784 6.64860 6.66789 6.95375 7.64556 7.75024 8.26396 8.35041 9.46633 10.00761 10.35980 11.39415 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.005778 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.338493 B = 4845.190746 C = 6432.425410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.593 5.593 6 C 0.599 3.401 7 O -0.548 6.548 8 C 0.050 3.950 9 C -0.135 4.135 10 C -0.291 4.291 11 S 0.460 5.540 12 N -0.494 5.494 13 C 0.086 3.914 14 C 0.174 3.826 15 H 0.068 0.932 16 N -0.709 5.709 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.169 0.831 31 H 0.184 0.816 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.387 0.613 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.370 -7.760 11.074 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.383 3.617 7 O -0.426 6.426 8 C -0.125 4.125 9 C -0.168 4.168 10 C -0.440 4.440 11 S 0.614 5.386 12 N -0.329 5.329 13 C -0.039 4.039 14 C 0.062 3.938 15 H 0.086 0.914 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.186 0.814 31 H 0.201 0.799 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.221 0.779 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.296 -7.842 9.409 14.257 hybrid contribution 0.050 0.009 0.946 0.947 sum 7.347 -7.834 10.355 14.919 Atomic orbital electron populations 1.21593 0.93782 1.01818 1.01747 1.22676 0.96379 0.99819 0.94679 0.89836 1.22328 0.82263 0.98305 0.97999 1.48364 1.11497 1.63703 1.08882 1.16897 0.81646 0.77970 0.85202 1.90760 1.82551 1.55565 1.13722 1.21144 0.97760 1.06142 0.87413 1.21359 0.90732 1.01634 1.03042 1.27195 1.04734 1.09356 1.02733 1.80732 1.00374 1.51094 1.06369 1.72750 1.18290 1.21052 1.20778 1.23408 1.02205 1.02022 0.76314 1.21332 0.91908 0.93720 0.86874 0.91433 1.42325 1.86278 1.06174 1.00101 1.19203 1.42648 0.92519 0.83226 0.91089 1.24742 1.02423 0.95425 0.97894 1.69653 1.56145 1.02844 1.29183 0.86274 0.77887 0.77820 0.84230 1.21186 1.21676 1.21198 0.93212 0.92805 0.91373 0.90736 0.91332 0.81351 0.79881 0.90214 0.91808 0.77911 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.29 37.16 0.35 -1.54 16 2 C -0.12 -1.88 3.27 -88.47 -0.29 -2.17 16 3 H 0.08 1.44 8.01 -51.93 -0.42 1.03 16 4 C 0.11 1.76 6.38 -2.53 -0.02 1.75 16 5 N -0.59 -10.37 3.33 -171.69 -0.57 -10.94 16 6 C 0.60 10.65 7.84 -12.40 -0.10 10.56 16 7 O -0.55 -10.54 16.91 5.30 0.09 -10.45 16 8 C 0.05 0.78 6.61 -84.06 -0.56 0.23 16 9 C -0.13 -1.69 9.98 -40.27 -0.40 -2.09 16 10 C -0.29 -2.84 11.41 29.58 0.34 -2.50 16 11 S 0.46 5.18 23.20 -107.50 -2.49 2.68 16 12 N -0.49 -7.76 8.20 24.85 0.20 -7.55 16 13 C 0.09 1.63 5.21 -3.07 -0.02 1.61 16 14 C 0.17 3.38 3.08 -66.10 -0.20 3.17 16 15 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 16 N -0.71 -17.04 5.15 -51.65 -0.27 -17.30 16 17 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 29 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 30 H 0.17 1.92 7.99 -52.48 -0.42 1.50 16 31 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.08 1.69 7.40 -51.93 -0.38 1.30 16 33 H 0.06 1.22 7.61 -51.93 -0.40 0.82 16 34 H 0.39 9.95 7.76 -40.82 -0.32 9.64 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -31.16 310.63 -8.21 -39.37 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.41 Total: 7.33 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.14 Total: 2.00 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.09 Total: -62.44 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -2.49 Total: 2.68 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.16 -8.21 -39.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054786745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.641 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds