Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00035 * 2 1 4 4 C 1.52997 * 109.47131 * 264.25281 * 3 2 1 5 5 H 1.08992 * 112.96750 * 310.69747 * 4 3 2 6 6 C 1.53951 * 113.76492 * 179.02157 * 4 3 2 7 7 C 1.53946 * 86.28821 * 222.09235 * 6 4 3 8 8 N 1.47582 * 113.76902 * 82.37765 * 4 3 2 9 9 C 1.36934 * 134.49337 * 318.93248 * 8 4 3 10 10 H 1.08000 * 120.00023 * 2.69299 * 9 8 4 11 11 C 1.38812 * 120.00085 * 182.69272 * 9 8 4 12 12 N 1.31624 * 119.99982 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00047 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47038 * 59.99970 * 13 11 9 15 15 H 1.48498 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47265 * 299.99816 * 13 11 9 17 17 C 1.34774 * 120.00196 * 180.02562 * 2 1 3 18 18 O 1.21631 * 120.00480 * 185.29195 * 17 2 1 19 19 C 1.47266 * 119.99807 * 5.29133 * 17 2 1 20 20 C 1.35211 * 123.14501 * 174.97459 * 19 17 2 21 21 S 1.70940 * 108.83042 * 179.81110 * 20 19 17 22 22 C 1.70773 * 91.12764 * 0.29291 * 21 20 19 23 23 N 1.28646 * 110.56013 * 359.70246 * 22 21 20 24 24 H 1.09003 * 109.46862 * 236.89767 * 1 2 3 25 25 H 1.09002 * 109.47088 * 356.89559 * 1 2 3 26 26 H 1.08998 * 109.47142 * 116.89058 * 1 2 3 27 27 H 1.08999 * 109.46900 * 24.25739 * 3 2 1 28 28 H 1.08997 * 109.46667 * 144.25128 * 3 2 1 29 29 H 1.08995 * 113.74153 * 336.42917 * 6 4 3 30 30 H 1.08999 * 113.74333 * 107.64008 * 6 4 3 31 31 H 1.08996 * 113.77484 * 137.91056 * 7 6 4 32 32 H 1.09001 * 113.77167 * 269.19669 * 7 6 4 33 33 H 0.96997 * 120.00000 * 179.97438 * 12 11 9 34 34 H 1.07997 * 125.58103 * 0.03973 * 20 19 17 35 35 H 1.08003 * 124.71693 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5776 1.6382 -1.4352 5 1 3.0493 0.8172 -1.9750 6 6 3.3344 2.9737 -1.5524 7 6 2.4531 3.2502 -2.7840 8 7 1.4926 2.2986 -2.1867 9 6 0.1406 2.1065 -2.2880 10 1 -0.3424 1.3436 -1.6955 11 6 -0.6092 2.8924 -3.1524 12 7 -0.0205 3.8218 -3.8749 13 14 -2.4534 2.6299 -3.2912 14 1 -3.0859 2.8504 -1.9658 15 1 -3.0172 3.5887 -4.2750 16 1 -2.7232 1.2414 -3.7435 17 6 2.1389 -1.1672 -0.0005 18 8 3.3513 -1.1695 0.0966 19 6 1.4073 -2.4397 -0.1187 20 6 2.0225 -3.6391 -0.2250 21 16 0.8328 -4.8616 -0.3351 22 6 -0.4166 -3.7012 -0.2416 23 7 0.0739 -2.5170 -0.1317 24 1 -0.3633 -0.5613 0.8609 25 1 -0.3633 1.0262 0.0557 26 1 -0.3633 -0.4648 -0.9165 27 1 1.5678 2.0518 0.4222 28 1 3.1014 1.1663 0.6004 29 1 3.1531 3.6552 -0.7213 30 1 4.3931 2.8593 -1.7850 31 1 2.0829 4.2739 -2.8385 32 1 2.8880 2.9048 -3.7219 33 1 -0.5444 4.3707 -4.4792 34 1 3.0906 -3.7988 -0.2348 35 1 -1.4718 -3.9301 -0.2664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085507885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = 87.935646 kcal Electronic energy + Delta-G solvation = -20197.655689 eV Core-core repulsion = 17132.607000 eV Total energy + Delta-G solvation = -3065.048690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48732 -38.68114 -37.53488 -34.94957 -32.17539 -30.70849 -28.75260 -27.77068 -26.26377 -25.44845 -23.25405 -22.97778 -21.24822 -19.34057 -19.03278 -18.12289 -16.80409 -16.31911 -15.92218 -15.37831 -15.09589 -14.85547 -14.24268 -13.88341 -13.51314 -13.43559 -13.10196 -12.83073 -12.45593 -12.16337 -11.84773 -11.38744 -11.28961 -11.05034 -10.90439 -10.66283 -10.48949 -10.05212 -9.87151 -9.81470 -9.63861 -9.49571 -9.21186 -9.09753 -8.72220 -8.09432 -6.78424 -5.69429 -2.99822 0.47002 1.16664 1.51001 2.06715 3.38305 3.41316 3.44688 3.46416 3.57922 4.10636 4.49589 4.87918 5.10043 5.21195 5.23882 5.49723 5.69243 5.71826 5.83893 5.93853 6.01893 6.16256 6.17078 6.31219 6.52795 6.55119 6.69689 6.78346 7.03301 7.33882 7.38725 7.50362 7.65963 7.78890 8.06361 8.44153 9.12090 9.79391 10.71521 11.48464 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.005948 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.118869 B = 4706.259912 C = 5882.933093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.581 5.581 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.044 0.956 6 C -0.159 4.159 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.224 4.224 10 H 0.090 0.910 11 C -0.011 4.011 12 N -0.922 5.922 13 Si 0.903 3.097 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.586 3.414 18 O -0.546 6.546 19 C 0.016 3.984 20 C -0.224 4.224 21 S 0.190 5.810 22 C -0.004 4.004 23 N -0.429 5.429 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.252 0.748 34 H 0.188 0.812 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -14.775 8.864 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.310 5.310 3 C -0.006 4.006 4 C 0.020 3.980 5 H 0.062 0.938 6 C -0.198 4.198 7 C 0.036 3.964 8 N -0.328 5.328 9 C -0.352 4.352 10 H 0.108 0.892 11 C -0.207 4.207 12 N -0.569 5.569 13 Si 0.733 3.267 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.370 3.630 18 O -0.425 6.425 19 C -0.119 4.119 20 C -0.366 4.366 21 S 0.444 5.556 22 C -0.304 4.304 23 N -0.144 5.144 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.205 0.795 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.054 -15.247 8.739 17.605 hybrid contribution -0.779 0.592 -0.419 1.064 sum 0.275 -14.655 8.321 16.854 Atomic orbital electron populations 1.22082 0.78013 1.02515 1.02048 1.47614 1.08092 1.05394 1.69946 1.22029 0.96497 0.83446 0.98602 1.22594 0.89587 0.94384 0.91419 0.93820 1.23769 0.97439 0.97449 1.01123 1.22162 0.86400 0.96160 0.91641 1.46207 1.01150 1.34499 1.50980 1.19359 0.80763 1.15506 1.19579 0.89208 1.24787 0.97718 0.99165 0.99028 1.69822 1.34180 1.23641 1.29297 0.86338 0.85593 0.77273 0.77460 1.21069 1.21679 1.21326 1.17070 0.86126 0.82276 0.77500 1.90768 1.12939 1.86946 1.51839 1.20633 0.88512 0.95348 1.07371 1.26573 1.06850 0.95914 1.07280 1.82804 0.96400 1.12152 1.64229 1.28613 1.05465 0.90982 1.05308 1.67399 1.10326 1.23275 1.13396 0.92362 0.90105 0.91223 0.89610 0.90596 0.90701 0.92946 0.91234 0.95791 0.93815 0.79498 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 7.22 59.85 0.43 2.13 16 2 N -0.58 -10.97 2.89 -182.91 -0.53 -11.49 16 3 C 0.12 2.24 5.26 -4.04 -0.02 2.22 16 4 C 0.13 2.77 4.49 -66.86 -0.30 2.47 16 5 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.16 -3.14 7.86 -25.79 -0.20 -3.34 16 7 C 0.16 3.93 7.45 -2.84 -0.02 3.90 16 8 N -0.60 -15.43 3.59 -169.69 -0.61 -16.04 16 9 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 10 H 0.09 2.29 3.75 -52.49 -0.20 2.09 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.92 -27.59 11.47 55.49 0.64 -26.95 16 13 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 C 0.59 11.02 7.60 -12.59 -0.10 10.92 16 18 O -0.55 -11.25 16.37 5.25 0.09 -11.16 16 19 C 0.02 0.25 6.56 -84.52 -0.55 -0.30 16 20 C -0.22 -2.83 10.62 29.65 0.31 -2.51 16 21 S 0.19 1.66 22.97 -107.50 -2.47 -0.81 16 22 C 0.00 -0.04 12.17 51.43 0.63 0.58 16 23 N -0.43 -6.18 6.79 -12.36 -0.08 -6.27 16 24 H 0.06 0.91 7.16 -51.93 -0.37 0.54 16 25 H 0.08 1.49 6.44 -51.93 -0.33 1.16 16 26 H 0.07 1.33 6.64 -51.93 -0.34 0.99 16 27 H 0.09 1.62 7.78 -51.93 -0.40 1.21 16 28 H 0.08 1.37 7.53 -51.93 -0.39 0.97 16 29 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.83 7.30 -51.93 -0.38 1.45 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.19 2.17 8.03 -52.49 -0.42 1.75 16 35 H 0.20 1.34 8.06 -52.48 -0.42 0.91 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -33.44 303.48 -7.58 -41.02 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.09 Total: 0.68 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -0.07 Total: 9.40 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.58 Total: -60.75 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.47 Total: -0.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.44 -7.58 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085507885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.957 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds