Wall clock time and date at job start Tue Mar 31 2020 05:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00035 * 2 1 4 4 C 1.52997 * 109.47131 * 264.25281 * 3 2 1 5 5 H 1.08992 * 112.96750 * 310.69747 * 4 3 2 6 6 C 1.53951 * 113.76492 * 179.02157 * 4 3 2 7 7 C 1.53946 * 86.28821 * 222.09235 * 6 4 3 8 8 N 1.47582 * 113.76902 * 82.37765 * 4 3 2 9 9 C 1.36934 * 134.49337 * 318.93248 * 8 4 3 10 10 H 1.08000 * 120.00023 * 2.69299 * 9 8 4 11 11 C 1.38812 * 120.00085 * 182.69272 * 9 8 4 12 12 N 1.31624 * 119.99982 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00047 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47038 * 59.99970 * 13 11 9 15 15 H 1.48498 * 109.47079 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47265 * 299.99816 * 13 11 9 17 17 C 1.34774 * 120.00196 * 180.02562 * 2 1 3 18 18 O 1.21631 * 120.00480 * 185.29195 * 17 2 1 19 19 C 1.47266 * 119.99807 * 5.29133 * 17 2 1 20 20 C 1.35211 * 123.14501 * 174.97459 * 19 17 2 21 21 S 1.70940 * 108.83042 * 179.81110 * 20 19 17 22 22 C 1.70773 * 91.12764 * 0.29291 * 21 20 19 23 23 N 1.28646 * 110.56013 * 359.70246 * 22 21 20 24 24 H 1.09003 * 109.46862 * 236.89767 * 1 2 3 25 25 H 1.09002 * 109.47088 * 356.89559 * 1 2 3 26 26 H 1.08998 * 109.47142 * 116.89058 * 1 2 3 27 27 H 1.08999 * 109.46900 * 24.25739 * 3 2 1 28 28 H 1.08997 * 109.46667 * 144.25128 * 3 2 1 29 29 H 1.08995 * 113.74153 * 336.42917 * 6 4 3 30 30 H 1.08999 * 113.74333 * 107.64008 * 6 4 3 31 31 H 1.08996 * 113.77484 * 137.91056 * 7 6 4 32 32 H 1.09001 * 113.77167 * 269.19669 * 7 6 4 33 33 H 0.96997 * 120.00000 * 179.97438 * 12 11 9 34 34 H 1.07997 * 125.58103 * 0.03973 * 20 19 17 35 35 H 1.08003 * 124.71693 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5776 1.6382 -1.4352 5 1 3.0493 0.8172 -1.9750 6 6 3.3344 2.9737 -1.5524 7 6 2.4531 3.2502 -2.7840 8 7 1.4926 2.2986 -2.1867 9 6 0.1406 2.1065 -2.2880 10 1 -0.3424 1.3436 -1.6955 11 6 -0.6092 2.8924 -3.1524 12 7 -0.0205 3.8218 -3.8749 13 14 -2.4534 2.6299 -3.2912 14 1 -3.0859 2.8504 -1.9658 15 1 -3.0172 3.5887 -4.2750 16 1 -2.7232 1.2414 -3.7435 17 6 2.1389 -1.1672 -0.0005 18 8 3.3513 -1.1695 0.0966 19 6 1.4073 -2.4397 -0.1187 20 6 2.0225 -3.6391 -0.2250 21 16 0.8328 -4.8616 -0.3351 22 6 -0.4166 -3.7012 -0.2416 23 7 0.0739 -2.5170 -0.1317 24 1 -0.3633 -0.5613 0.8609 25 1 -0.3633 1.0262 0.0557 26 1 -0.3633 -0.4648 -0.9165 27 1 1.5678 2.0518 0.4222 28 1 3.1014 1.1663 0.6004 29 1 3.1531 3.6552 -0.7213 30 1 4.3931 2.8593 -1.7850 31 1 2.0829 4.2739 -2.8385 32 1 2.8880 2.9048 -3.7219 33 1 -0.5444 4.3707 -4.4792 34 1 3.0906 -3.7988 -0.2348 35 1 -1.4718 -3.9301 -0.2664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085507885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:16 Heat of formation + Delta-G solvation = 65.348913 kcal Electronic energy + Delta-G solvation = -20198.635124 eV Core-core repulsion = 17132.607000 eV Total energy + Delta-G solvation = -3066.028124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66991 -40.07902 -39.14823 -36.44281 -34.24956 -31.71733 -30.37732 -29.66611 -27.63807 -26.61315 -25.24328 -24.41742 -22.58213 -20.91329 -20.34758 -19.35590 -18.67894 -17.63734 -17.17495 -16.78040 -16.73175 -16.29651 -15.75641 -15.59415 -14.85794 -14.72048 -14.52834 -14.29230 -13.91573 -13.60996 -13.19853 -13.08651 -12.90888 -12.83958 -12.68149 -12.48043 -12.29354 -11.82445 -11.49059 -11.19828 -11.16124 -10.79533 -10.70426 -10.56149 -9.98750 -9.58415 -8.85258 -7.83100 -5.14846 -0.44999 0.36362 0.65791 0.99061 1.45179 1.48619 1.53891 2.05514 2.31112 2.50567 3.13071 3.33511 3.44115 3.84420 3.95839 4.14917 4.25532 4.30928 4.36830 4.43175 4.56482 4.67140 4.76118 4.84877 4.89359 4.99019 5.03701 5.11923 5.34940 5.51714 5.63157 5.71526 5.98485 6.32259 6.50488 6.98711 7.05378 7.69385 8.65616 9.35084 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.005948 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.118869 B = 4706.259912 C = 5882.933093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.591 5.591 3 C 0.125 3.875 4 C 0.129 3.871 5 H 0.024 0.976 6 C -0.130 4.130 7 C 0.153 3.847 8 N -0.624 5.624 9 C -0.225 4.225 10 H 0.105 0.895 11 C -0.075 4.075 12 N -0.959 5.959 13 Si 0.966 3.034 14 H -0.269 1.269 15 H -0.300 1.300 16 H -0.280 1.280 17 C 0.579 3.421 18 O -0.575 6.575 19 C -0.021 4.021 20 C -0.239 4.239 21 S 0.298 5.702 22 C -0.011 4.011 23 N -0.466 5.466 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.008 0.992 33 H 0.244 0.756 34 H 0.190 0.810 35 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -17.299 10.192 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.320 5.320 3 C 0.002 3.998 4 C 0.022 3.978 5 H 0.042 0.958 6 C -0.168 4.168 7 C 0.028 3.972 8 N -0.350 5.350 9 C -0.353 4.353 10 H 0.122 0.878 11 C -0.267 4.267 12 N -0.609 5.609 13 Si 0.795 3.205 14 H -0.194 1.194 15 H -0.227 1.227 16 H -0.207 1.207 17 C 0.365 3.635 18 O -0.456 6.456 19 C -0.156 4.156 20 C -0.382 4.382 21 S 0.553 5.447 22 C -0.309 4.309 23 N -0.181 5.181 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.207 0.793 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.187 -17.817 10.098 20.481 hybrid contribution -0.464 1.165 -0.835 1.506 sum -0.277 -16.652 9.263 19.058 Atomic orbital electron populations 1.21937 0.77431 1.01698 1.02177 1.47719 1.08506 1.05474 1.70265 1.21849 0.97244 0.84031 0.96689 1.22649 0.88426 0.94519 0.92196 0.95836 1.23566 0.98183 0.96077 0.99011 1.22118 0.87518 0.94557 0.93006 1.46591 1.01471 1.35408 1.51541 1.19889 0.81952 1.14803 1.18637 0.87783 1.25615 1.02046 0.99550 0.99512 1.70030 1.35404 1.24989 1.30487 0.85321 0.80619 0.76918 0.77669 1.19433 1.22673 1.20680 1.17594 0.86114 0.83302 0.76441 1.90724 1.14144 1.87605 1.53156 1.20325 0.89569 0.94670 1.11031 1.26880 1.08394 0.96888 1.06004 1.82457 0.92816 1.08391 1.61022 1.29236 1.07711 0.90664 1.03338 1.67327 1.09702 1.25660 1.15395 0.90334 0.91304 0.92751 0.89360 0.89302 0.88877 0.90021 0.93783 0.97456 0.94750 0.79285 0.74519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.83 7.22 127.77 0.92 4.75 16 2 N -0.59 -22.18 2.89 -850.84 -2.46 -24.63 16 3 C 0.13 4.72 5.26 86.38 0.45 5.17 16 4 C 0.13 5.59 4.49 45.09 0.20 5.80 16 5 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 6 C -0.13 -5.01 7.86 31.25 0.25 -4.76 16 7 C 0.15 7.64 7.45 86.43 0.64 8.28 16 8 N -0.62 -32.45 3.59 -690.77 -2.48 -34.92 16 9 C -0.22 -12.38 10.27 84.03 0.86 -11.52 16 10 H 0.10 5.30 3.75 -2.91 -0.01 5.29 16 11 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 12 N -0.96 -59.14 11.47 21.65 0.25 -58.89 16 13 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C 0.58 21.78 7.60 86.62 0.66 22.43 16 18 O -0.58 -23.86 16.37 -4.13 -0.07 -23.92 16 19 C -0.02 -0.65 6.56 40.56 0.27 -0.38 16 20 C -0.24 -5.60 10.62 67.12 0.71 -4.89 16 21 S 0.30 4.06 22.97 -56.49 -1.30 2.76 16 22 C -0.01 -0.19 12.17 130.71 1.59 1.40 16 23 N -0.47 -12.60 6.79 -193.02 -1.31 -13.92 16 24 H 0.08 2.39 7.16 -2.39 -0.02 2.37 16 25 H 0.07 2.52 6.44 -2.39 -0.02 2.50 16 26 H 0.05 2.06 6.64 -2.39 -0.02 2.04 16 27 H 0.09 3.26 7.78 -2.39 -0.02 3.25 16 28 H 0.09 3.12 7.53 -2.39 -0.02 3.10 16 29 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 30 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.04 2.40 7.30 -2.39 -0.02 2.38 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.19 4.18 8.03 -2.91 -0.02 4.16 16 35 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -74.77 303.48 2.81 -71.96 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.11 Total: 11.29 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 7.03 Total: 22.44 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.99 Total: -132.36 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.30 Total: 2.76 kcal Total: -74.77 2.81 -71.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085507885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.305 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds