Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47054 * 2 1 4 4 C 1.50702 * 109.47165 * 239.99882 * 2 1 3 5 5 H 1.08000 * 119.99945 * 240.00189 * 4 2 1 6 6 C 1.37873 * 119.99836 * 60.00407 * 4 2 1 7 7 N 1.31507 * 120.00401 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99665 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46790 * 269.99664 * 8 6 4 10 10 H 1.48500 * 109.47263 * 29.99549 * 8 6 4 11 11 H 1.48501 * 109.46947 * 149.99965 * 8 6 4 12 12 N 1.46502 * 109.47057 * 119.99746 * 2 1 3 13 13 C 1.34773 * 120.00177 * 274.99999 * 12 2 1 14 14 O 1.21359 * 120.00072 * 359.97438 * 13 12 2 15 15 C 1.49363 * 120.00353 * 179.97438 * 13 12 2 16 16 O 1.21371 * 119.99336 * 359.97438 * 15 13 12 17 17 N 1.34773 * 120.00353 * 179.97438 * 15 13 12 18 18 C 1.39330 * 119.99763 * 174.91399 * 17 15 13 19 19 C 1.39068 * 119.66920 * 185.06610 * 18 17 15 20 20 C 1.38347 * 119.12375 * 180.02562 * 19 18 17 21 21 C 1.39010 * 118.48032 * 0.02562 * 20 19 18 22 22 F 1.35102 * 120.37238 * 179.97438 * 21 20 19 23 23 C 1.38322 * 119.26385 * 359.97438 * 21 20 19 24 24 N 1.31925 * 120.81464 * 359.72417 * 23 21 20 25 25 H 1.08995 * 109.47625 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47089 * 300.00714 * 1 2 3 27 27 H 1.09007 * 109.46915 * 59.99986 * 1 2 3 28 28 H 0.96999 * 120.00538 * 180.02562 * 7 6 4 29 29 H 0.97003 * 119.99341 * 94.99647 * 12 2 1 30 30 H 0.96999 * 119.99741 * 354.91794 * 17 15 13 31 31 H 1.08004 * 120.43995 * 359.97438 * 19 18 17 32 32 H 1.08007 * 120.76180 * 180.02562 * 20 19 18 33 33 H 1.07996 * 119.58652 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.6298 -0.5460 -4.4122 10 1 2.4859 -2.5663 -3.7119 11 1 1.3432 -0.9493 -5.1120 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8589 1.1594 2.4115 15 6 2.6444 -0.7224 3.5769 16 8 2.9321 -1.9002 3.5226 17 7 2.7736 -0.0499 4.7377 18 6 3.1354 -0.7287 5.8994 19 6 3.1640 -0.0498 7.1128 20 6 3.5255 -0.7346 8.2592 21 6 3.8483 -2.0825 8.1521 22 9 4.2070 -2.7880 9.2470 23 6 3.7981 -2.6934 6.9121 24 7 3.4438 -2.0143 5.8381 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7083 1.1608 -3.4844 29 1 2.2489 -1.6318 1.1526 30 1 2.6146 0.9066 4.7643 31 1 2.9083 0.9985 7.1594 32 1 3.5562 -0.2336 9.2155 33 1 4.0474 -3.7404 6.8231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116807516.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -63.025661 kcal Electronic energy + Delta-G solvation = -20822.829135 eV Core-core repulsion = 17185.021096 eV Total energy + Delta-G solvation = -3637.808039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.14910 -41.09990 -39.66644 -37.97875 -35.48776 -34.68225 -32.81567 -32.44445 -30.05163 -29.15610 -25.47723 -25.24836 -24.33692 -22.88261 -20.96818 -19.76049 -18.97936 -18.00310 -17.73805 -17.08079 -16.18749 -16.11040 -15.85930 -15.54058 -15.10807 -14.78763 -14.29216 -14.14801 -14.02305 -13.80968 -13.32352 -13.10188 -12.86376 -12.51323 -11.83791 -11.36788 -11.14613 -11.04140 -10.88304 -10.84452 -10.38004 -10.30094 -10.29440 -9.85689 -9.17829 -9.00337 -8.64914 -8.46458 -8.17513 -6.19755 -4.29472 0.55155 0.80132 1.84378 2.38628 3.22940 3.29617 3.31925 3.33319 3.69313 3.73692 3.84810 4.22230 4.32022 4.40548 4.52118 4.80710 5.04435 5.13571 5.18677 5.40695 5.54042 5.95137 6.36332 6.68563 6.76875 6.81645 6.98989 7.15323 7.29668 7.55167 7.62393 7.77022 7.93838 8.02173 8.39230 8.56872 8.81507 9.37786 10.86312 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.042147 B = 0.003152 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.180046 B = 8881.907335 C = 9343.954404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.666 5.666 13 C 0.496 3.504 14 O -0.537 6.537 15 C 0.498 3.502 16 O -0.452 6.452 17 N -0.640 5.640 18 C 0.358 3.642 19 C -0.177 4.177 20 C -0.078 4.078 21 C 0.008 3.992 22 F -0.134 7.134 23 C 0.113 3.887 24 N -0.452 5.452 25 H 0.030 0.970 26 H 0.016 0.984 27 H 0.095 0.905 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.431 0.569 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -2.127 19.507 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.315 5.315 13 C 0.274 3.726 14 O -0.416 6.416 15 C 0.279 3.721 16 O -0.319 6.319 17 N -0.289 5.289 18 C 0.126 3.874 19 C -0.200 4.200 20 C -0.105 4.105 21 C -0.015 4.015 22 F -0.113 7.113 23 C -0.047 4.047 24 N -0.166 5.166 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.270 0.730 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.753 -2.457 18.381 18.920 hybrid contribution 0.408 -0.066 0.227 0.472 sum 4.161 -2.523 18.608 19.234 Atomic orbital electron populations 1.22103 0.97784 0.99623 1.01240 1.18994 0.91478 0.94136 0.79281 0.92740 1.21199 1.32839 1.13535 0.90012 0.91687 1.24872 0.94642 0.94933 0.99107 1.69884 1.35632 1.22437 1.24118 0.86387 0.78597 0.79961 0.81850 1.20469 1.19681 1.21006 1.46517 1.61139 1.14599 1.09251 1.19661 0.81200 0.87272 0.84470 1.90727 1.50997 1.15186 1.84651 1.21101 0.78857 0.87534 0.84562 1.90839 1.42482 1.14826 1.83720 1.43359 1.66356 1.13237 1.05914 1.18566 0.93546 0.89231 0.86029 1.21434 1.05926 1.02125 0.90542 1.21398 0.96751 0.92431 0.99927 1.18725 1.06599 0.91358 0.84819 1.91509 1.89685 1.78222 1.51839 1.22860 0.95313 1.00879 0.85613 1.67767 1.12470 1.06224 1.30185 0.95049 0.96449 0.88679 0.92421 0.76246 0.72963 0.83241 0.83120 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 2 C 0.26 6.49 2.56 -69.08 -0.18 6.31 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.67 -14.08 5.06 -55.39 -0.28 -14.36 16 13 C 0.50 9.69 7.85 -11.63 -0.09 9.60 16 14 O -0.54 -11.41 16.15 5.49 0.09 -11.32 16 15 C 0.50 8.43 7.84 -11.63 -0.09 8.34 16 16 O -0.45 -8.48 14.74 5.48 0.08 -8.40 16 17 N -0.64 -8.47 5.38 -11.85 -0.06 -8.54 16 18 C 0.36 4.43 7.42 -154.77 -1.15 3.29 16 19 C -0.18 -1.52 9.94 -39.23 -0.39 -1.91 16 20 C -0.08 -0.62 10.15 -39.26 -0.40 -1.02 16 21 C 0.01 0.08 7.34 -39.26 -0.29 -0.21 16 22 F -0.13 -1.29 17.28 2.25 0.04 -1.25 16 23 C 0.11 1.25 11.16 -17.48 -0.20 1.05 16 24 N -0.45 -6.37 7.88 -12.32 -0.10 -6.46 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 7.99 8.01 -40.82 -0.33 7.66 16 30 H 0.43 4.65 8.18 -40.82 -0.33 4.32 16 31 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 302.56 15.07 4.56 4.56 Total: -1.00 -30.88 302.56 -5.92 -36.80 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.02 Total: 7.63 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -2.83 Total: 9.55 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.19 Total: -52.96 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.88 -5.92 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116807516.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds