Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99957 * 2 1 4 4 C 1.38758 * 120.04890 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.97353 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.06423 * 359.97438 * 5 4 3 7 7 C 1.38362 * 120.10273 * 359.78673 * 6 5 4 8 8 Cl 1.73594 * 119.99064 * 180.25387 * 7 6 5 9 9 C 1.38283 * 120.02475 * 0.46604 * 7 6 5 10 10 C 1.50702 * 120.03693 * 179.78736 * 9 7 6 11 11 N 1.46902 * 109.47215 * 269.72685 * 10 9 7 12 12 C 1.47961 * 111.00005 * 169.99576 * 11 10 9 13 13 C 1.53934 * 86.17939 * 137.58072 * 12 11 10 14 14 C 1.50703 * 113.73399 * 221.81705 * 13 12 11 15 15 H 1.07999 * 119.99920 * 358.09577 * 14 13 12 16 16 C 1.37877 * 119.99669 * 178.10223 * 14 13 12 17 17 N 1.31521 * 119.99589 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00327 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47056 * 90.00030 * 18 16 14 20 20 H 1.48501 * 109.47403 * 209.99911 * 18 16 14 21 21 H 1.48493 * 109.47309 * 330.00170 * 18 16 14 22 22 C 1.48296 * 111.00409 * 269.34877 * 11 10 9 23 23 H 1.09004 * 109.47102 * 300.00131 * 1 2 3 24 24 H 1.09001 * 109.46923 * 59.99963 * 1 2 3 25 25 H 1.09005 * 109.47255 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.01474 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.97123 * 180.02562 * 5 4 3 28 28 H 1.07999 * 119.95009 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47251 * 149.72260 * 10 9 7 30 30 H 1.09004 * 109.46551 * 29.72627 * 10 9 7 31 31 H 1.09007 * 113.75652 * 23.26342 * 12 11 10 32 32 H 1.08993 * 113.76177 * 251.90248 * 12 11 10 33 33 H 1.09002 * 113.73279 * 90.64057 * 13 12 11 34 34 H 0.96995 * 119.99785 * 179.97438 * 17 16 14 35 35 H 1.09001 * 113.86054 * 108.14174 * 22 11 10 36 36 H 1.09000 * 113.76062 * 336.68481 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9199 3.6052 0.0011 6 6 3.3007 3.6773 0.0016 7 6 4.0561 2.5181 0.0061 8 17 5.7895 2.6120 0.0134 9 6 3.4309 1.2847 0.0003 10 6 4.2534 0.0220 0.0003 11 7 4.5208 -0.3883 -1.3847 12 6 5.5184 -1.4801 -1.4312 13 6 4.6146 -2.1215 -2.4994 14 6 4.4529 -3.6115 -2.3420 15 1 4.9752 -4.1309 -1.5521 16 6 3.6382 -4.3116 -3.2064 17 7 3.4975 -5.6121 -3.0692 18 14 2.7344 -3.4133 -4.5721 19 1 3.5827 -3.3832 -5.7907 20 1 1.4626 -4.1188 -4.8717 21 1 2.4396 -2.0235 -4.1399 22 6 3.4658 -1.3048 -1.8808 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2126 2.3199 0.0014 27 1 1.3324 4.5114 0.0019 28 1 3.7903 4.6399 0.0024 29 1 3.7061 -0.7683 0.5141 30 1 5.1974 0.2034 0.5142 31 1 5.5831 -2.0554 -0.5075 32 1 6.4924 -1.1692 -1.8090 33 1 4.8631 -1.8265 -3.5189 34 1 2.9241 -6.1046 -3.6771 35 1 2.8009 -0.8541 -2.6176 36 1 2.9313 -1.8290 -1.0885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140725564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = 19.623256 kcal Electronic energy + Delta-G solvation = -20012.318309 eV Core-core repulsion = 16909.970914 eV Total energy + Delta-G solvation = -3102.347395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37392 -38.61081 -37.62078 -36.14444 -33.06755 -32.03920 -30.03124 -28.87114 -27.33065 -25.66082 -25.06676 -22.72345 -22.18817 -20.82456 -18.52167 -18.10286 -16.98888 -16.45526 -15.86106 -15.78112 -15.02837 -14.97734 -14.43272 -14.15961 -13.75929 -13.56441 -13.05853 -12.83251 -12.55519 -12.24672 -11.89158 -11.79568 -11.65273 -11.43626 -11.18703 -10.93981 -10.87659 -10.62816 -10.16337 -9.92854 -9.83368 -9.54159 -9.08115 -8.65054 -8.51132 -8.18613 -7.91403 -6.05722 -4.04770 1.11236 1.31972 2.15741 3.32299 3.35605 3.40213 3.46525 3.57671 4.46583 4.61850 4.79489 4.92013 4.97505 5.07774 5.12394 5.23866 5.27733 5.32639 5.48840 5.63181 5.66816 5.96639 6.10422 6.13208 6.24431 6.27035 6.33367 6.47041 6.53244 6.60233 6.60399 6.87656 7.15275 7.36017 7.46187 7.76502 7.95029 8.54383 8.97718 9.57953 11.07062 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.005901 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.829751 B = 4743.746668 C = 5660.481123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.148 3.852 4 C -0.209 4.209 5 C -0.076 4.076 6 C -0.154 4.154 7 C 0.015 3.985 8 Cl -0.058 7.058 9 C -0.087 4.087 10 C 0.062 3.938 11 N -0.480 5.480 12 C 0.015 3.985 13 C -0.005 4.005 14 C -0.509 4.509 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.902 5.902 18 Si 0.872 3.128 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.254 1.254 22 C 0.005 3.995 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.263 0.737 35 H 0.061 0.939 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 18.175 7.776 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.212 6.212 3 C 0.101 3.899 4 C -0.228 4.228 5 C -0.095 4.095 6 C -0.173 4.173 7 C -0.012 4.012 8 Cl -0.029 7.029 9 C -0.089 4.089 10 C -0.066 4.066 11 N -0.203 5.203 12 C -0.113 4.113 13 C -0.024 4.024 14 C -0.547 4.547 15 H 0.091 0.909 16 C -0.128 4.128 17 N -0.540 5.540 18 Si 0.699 3.301 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.178 1.178 22 C -0.124 4.124 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.121 0.879 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.677 18.431 7.387 20.399 hybrid contribution -0.939 -0.143 -0.247 0.981 sum -5.616 18.288 7.140 20.419 Atomic orbital electron populations 1.23095 0.78410 1.04370 1.00928 1.86213 1.21182 1.25910 1.87935 1.18674 0.91230 0.84691 0.95257 1.21271 1.00212 0.92247 1.09094 1.20769 0.93676 0.97162 0.97894 1.20875 0.93716 0.97137 1.05533 1.20453 0.84931 0.93557 1.02264 1.98361 1.09527 1.98377 1.96617 1.18999 0.90788 0.95008 1.04066 1.21466 0.98114 0.93088 0.93976 1.68587 1.07454 1.28705 1.15544 1.23837 0.96262 0.91261 0.99977 1.20770 0.91530 0.95574 0.94569 1.20986 1.28157 0.89802 1.15743 0.90884 1.24982 0.96152 0.94526 0.97186 1.69920 1.38925 1.06830 1.38285 0.86946 0.79338 0.81114 0.82682 1.20432 1.21663 1.17817 1.24495 0.95560 0.92936 0.99370 0.92851 0.92665 0.87878 0.85152 0.85209 0.85124 0.92406 0.90398 0.92053 0.91238 0.93182 0.92746 0.92043 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.59 8.45 -19.43 -0.16 -4.76 16 3 C 0.15 2.21 6.66 -39.22 -0.26 1.95 16 4 C -0.21 -2.50 9.04 -39.43 -0.36 -2.85 16 5 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 6 C -0.15 -1.83 9.83 -39.53 -0.39 -2.22 16 7 C 0.02 0.22 6.31 -39.52 -0.25 -0.03 16 8 Cl -0.06 -0.80 27.29 -51.86 -1.42 -2.22 16 9 C -0.09 -1.39 5.46 -104.44 -0.57 -1.96 16 10 C 0.06 1.09 4.32 -4.97 -0.02 1.07 16 11 N -0.48 -9.64 6.15 -239.48 -1.47 -11.11 16 12 C 0.02 0.31 7.50 -2.76 -0.02 0.29 16 13 C 0.00 -0.12 2.88 -90.84 -0.26 -0.38 16 14 C -0.51 -14.26 9.33 -34.44 -0.32 -14.58 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.87 21.52 27.08 -169.99 -4.60 16.92 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.25 -5.99 5.27 56.52 0.30 -5.69 16 22 C 0.01 0.11 5.92 -2.57 -0.02 0.10 16 23 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 25 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.06 1.07 6.77 -51.93 -0.35 0.72 16 30 H 0.08 1.30 6.83 -51.93 -0.35 0.94 16 31 H 0.06 1.28 7.88 -51.92 -0.41 0.87 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 1.23 7.20 -51.93 -0.37 0.85 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.06 1.39 6.82 -51.93 -0.35 1.04 16 36 H 0.07 1.61 7.06 -51.93 -0.37 1.24 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -31.12 307.92 -8.90 -40.02 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.69 Total: -0.21 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.97 Total: -16.55 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.70 Total: -37.83 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.16 Total: -4.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.60 Total: 16.92 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -8.90 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140725564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.643 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds