Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36770 * 120.00199 * 2 1 4 4 H 1.07999 * 120.00570 * 156.09959 * 3 2 1 5 5 C 1.39095 * 119.99890 * 336.10824 * 3 2 1 6 6 N 1.31340 * 120.00023 * 356.25427 * 5 3 2 7 7 Si 1.86799 * 120.00025 * 176.25711 * 5 3 2 8 8 H 1.48502 * 109.47305 * 89.99868 * 7 5 3 9 9 H 1.48500 * 109.46998 * 209.99807 * 7 5 3 10 10 H 1.48501 * 109.47203 * 329.99537 * 7 5 3 11 11 C 1.34769 * 119.99982 * 180.02562 * 2 1 3 12 12 O 1.21685 * 119.99964 * 178.42497 * 11 2 1 13 13 C 1.47076 * 120.00259 * 358.70172 * 11 2 1 14 14 N 1.30254 * 125.54973 * 187.72939 * 13 11 2 15 15 C 1.31393 * 116.72760 * 179.76603 * 14 13 11 16 16 C 1.35637 * 114.34824 * 0.55768 * 15 14 13 17 17 S 1.70740 * 109.64474 * 359.66937 * 16 15 14 18 18 C 1.51222 * 124.26065 * 179.63082 * 16 15 14 19 19 N 1.47140 * 108.49373 * 343.93479 * 18 16 15 20 20 C 1.46896 * 111.00301 * 287.11076 * 19 18 16 21 21 C 1.46963 * 110.89672 * 50.99503 * 19 18 16 22 22 C 1.52423 * 124.05995 * 180.30804 * 15 14 13 23 23 H 1.08995 * 109.47570 * 216.49737 * 1 2 3 24 24 H 1.09002 * 109.47129 * 336.49596 * 1 2 3 25 25 H 1.08996 * 109.47691 * 96.49194 * 1 2 3 26 26 H 0.97003 * 120.00282 * 180.02562 * 6 5 3 27 27 H 1.08992 * 109.63824 * 103.64312 * 18 16 15 28 28 H 1.09000 * 109.63007 * 224.03764 * 18 16 15 29 29 H 1.09005 * 109.47233 * 63.95471 * 20 19 18 30 30 H 1.08998 * 109.47516 * 183.94945 * 20 19 18 31 31 H 1.08998 * 109.47421 * 303.95382 * 20 19 18 32 32 H 1.09003 * 109.45837 * 47.93022 * 21 19 18 33 33 H 1.09000 * 109.45489 * 167.89284 * 21 19 18 34 34 H 1.08995 * 109.71958 * 43.80965 * 22 15 14 35 35 H 1.08995 * 109.76083 * 283.16463 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1488 1.1844 0.0000 4 1 3.1594 1.2246 0.3789 5 6 1.5428 2.3374 -0.4879 6 7 0.3418 2.2749 -1.0160 7 14 2.4369 3.9747 -0.3920 8 1 3.2396 4.1733 -1.6255 9 1 1.4458 5.0732 -0.2643 10 1 3.3360 3.9793 0.7898 11 6 2.1388 -1.1671 -0.0005 12 8 3.3553 -1.1673 -0.0295 13 6 1.4037 -2.4407 0.0278 14 7 1.9374 -3.6201 0.1727 15 6 1.1146 -4.6445 0.1776 16 6 -0.1909 -4.3139 0.0162 17 16 -0.3395 -2.6198 -0.1362 18 6 -1.3242 -5.3145 -0.0206 19 7 -0.7573 -6.6538 -0.2440 20 6 -0.2918 -6.8041 -1.6292 21 6 0.3270 -6.9296 0.7089 22 6 1.5568 -6.0938 0.3425 23 1 -0.3634 -0.8261 0.6112 24 1 -0.3633 0.9424 0.4099 25 1 -0.3634 -0.1162 -1.0210 26 1 -0.0807 3.0789 -1.3566 27 1 -1.8593 -5.2970 0.9287 28 1 -2.0083 -5.0633 -0.8312 29 1 0.5255 -6.1073 -1.8155 30 1 0.0579 -7.8244 -1.7863 31 1 -1.1131 -6.5920 -2.3136 32 1 -0.0004 -6.6717 1.7161 33 1 0.5835 -7.9883 0.6705 34 1 2.2992 -6.1636 1.1375 35 1 1.9835 -6.4575 -0.5922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154219675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = 35.926979 kcal Electronic energy + Delta-G solvation = -19906.944452 eV Core-core repulsion = 16839.640497 eV Total energy + Delta-G solvation = -3067.303955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19649 -38.65073 -37.12621 -34.88041 -32.00202 -31.27828 -30.50878 -27.64124 -26.75685 -25.69926 -24.08917 -23.82160 -21.84298 -19.64016 -18.13403 -17.66588 -17.16612 -16.17872 -15.70965 -15.31964 -15.08491 -14.67836 -14.45994 -14.23863 -13.93462 -13.40196 -13.08818 -12.66675 -12.57807 -12.30890 -12.03709 -11.98694 -11.78734 -11.63123 -11.48015 -11.25049 -11.10021 -10.68288 -10.49146 -10.10275 -9.47431 -9.24050 -8.90945 -8.58699 -8.53357 -8.11870 -7.96479 -6.59383 -4.11963 0.80414 1.76617 2.23391 2.85269 3.10438 3.14375 3.18270 3.77435 3.89069 4.10599 4.25965 4.77504 4.92478 4.92531 5.01726 5.02976 5.11453 5.33938 5.42922 5.51398 5.55036 5.68397 5.72687 5.82713 5.92543 5.95789 6.07988 6.48757 6.54730 6.80560 6.85507 6.97037 7.29344 7.77008 8.11618 8.29170 8.89615 9.05507 9.67666 10.41066 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041627 B = 0.004539 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.484081 B = 6167.164656 C = 6613.397094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.419 5.419 3 C -0.292 4.292 4 H 0.108 0.892 5 C 0.032 3.968 6 N -0.872 5.872 7 Si 0.939 3.061 8 H -0.273 1.273 9 H -0.280 1.280 10 H -0.266 1.266 11 C 0.501 3.499 12 O -0.556 6.556 13 C 0.046 3.954 14 N -0.431 5.431 15 C 0.059 3.941 16 C -0.341 4.341 17 S 0.189 5.811 18 C 0.138 3.862 19 N -0.529 5.529 20 C 0.016 3.984 21 C 0.055 3.945 22 C -0.076 4.076 23 H 0.032 0.968 24 H 0.112 0.888 25 H 0.064 0.936 26 H 0.275 0.725 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 -11.765 1.236 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.138 5.138 3 C -0.421 4.421 4 H 0.125 0.875 5 C -0.173 4.173 6 N -0.511 5.511 7 Si 0.765 3.235 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.190 1.190 11 C 0.286 3.714 12 O -0.440 6.440 13 C -0.230 4.230 14 N -0.145 5.145 15 C -0.079 4.079 16 C -0.465 4.465 17 S 0.447 5.553 18 C 0.008 3.992 19 N -0.250 5.250 20 C -0.132 4.132 21 C -0.074 4.074 22 C -0.117 4.117 23 H 0.049 0.951 24 H 0.130 0.870 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.714 -11.326 1.119 13.749 hybrid contribution 1.135 0.494 -0.141 1.246 sum -6.579 -10.833 0.979 12.711 Atomic orbital electron populations 1.22021 0.81150 1.01058 1.01162 1.43442 1.05683 1.04497 1.60136 1.19841 1.00384 0.83378 1.38497 0.87454 1.25534 0.96297 1.00628 0.94868 1.69901 1.13839 1.30386 1.36944 0.85709 0.78908 0.79541 0.79377 1.19879 1.20512 1.19014 1.16586 0.86917 0.80869 0.86981 1.90689 1.12133 1.85190 1.55945 1.27774 0.91811 0.97033 1.06390 1.66120 1.36680 0.97364 1.14371 1.20751 0.87626 0.95529 1.03989 1.27134 1.00822 1.04232 1.14269 1.84551 1.10864 0.95391 1.64464 1.20756 0.92197 0.83535 1.02680 1.62615 1.32104 1.25892 1.04435 1.22459 1.00228 1.01481 0.89072 1.22223 0.89054 0.99472 0.96605 1.21005 0.99202 0.88344 1.03128 0.95122 0.86991 0.91753 0.91442 0.89212 0.89565 0.94417 0.91292 0.91450 0.90352 0.89690 0.89574 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.98 7.25 59.84 0.43 2.41 16 2 N -0.42 -10.70 3.01 -123.57 -0.37 -11.08 16 3 C -0.29 -7.81 9.27 -15.03 -0.14 -7.94 16 4 H 0.11 2.98 7.42 -52.49 -0.39 2.59 16 5 C 0.03 0.78 5.23 -17.44 -0.09 0.69 16 6 N -0.87 -21.42 10.34 55.50 0.57 -20.84 16 7 Si 0.94 19.49 29.56 -169.99 -5.02 14.47 16 8 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 9 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 C 0.50 13.18 7.61 -12.68 -0.10 13.09 16 12 O -0.56 -16.61 16.79 5.20 0.09 -16.52 16 13 C 0.05 1.04 7.24 -14.64 -0.11 0.94 16 14 N -0.43 -9.52 10.56 -6.83 -0.07 -9.59 16 15 C 0.06 1.05 6.11 -82.85 -0.51 0.54 16 16 C -0.34 -5.40 5.78 -34.98 -0.20 -5.61 16 17 S 0.19 3.26 18.02 -107.50 -1.94 1.33 16 18 C 0.14 1.70 6.11 -4.59 -0.03 1.67 16 19 N -0.53 -6.12 5.24 -243.70 -1.28 -7.39 16 20 C 0.02 0.17 8.83 60.06 0.53 0.70 16 21 C 0.06 0.61 5.95 -3.72 -0.02 0.58 16 22 C -0.08 -1.03 5.71 -26.95 -0.15 -1.19 16 23 H 0.03 0.60 4.47 -22.40 -0.10 0.50 16 24 H 0.11 2.50 6.30 -51.93 -0.33 2.17 16 25 H 0.06 1.39 7.69 -51.93 -0.40 0.99 16 26 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 29 H 0.04 0.49 5.61 -51.93 -0.29 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.05 6.91 -51.93 -0.36 0.70 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -30.81 293.27 -7.92 -38.74 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.94 Total: 0.58 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.38 Total: 5.89 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -1.15 Total: -48.90 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.94 Total: 1.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.81 -7.92 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154219675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.664 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds